ISFop3

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP022377 ND Francisella opportunistica
Francisella sp. MA067296
Francisella opportunistica
Francisella opportunistica PA05-1188
Francisella sp. PA05-1188
DNA section
IS Length : 1187 bp

Ends


Left end : TGTAAGTTAAATTCTTAGTATAATGTGTTTACCAAGGAGTTAAATCAAGACTATTTTAATAGTTTTGATTATAACCCAAGCGACCGGTTCAGGATAGATT
Right end : CTTGTAGCTGTTATGAGAAAAATTATAGTCATTGCTAATGCTAAAATTAGAGATCTAAAAAGAGATTTGAAGATTTTATAAATAAATTAGCAACATAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TCAAGTTCAGgatGACGGTTGTG3

DNA sequence

TGTAAGTTAAATTCTTAGTATAATGTGTTTACCAAGGAGTTAAATCAAGACTATTTTAATAGTTTTGATTATAACCCAAGCGACCGGTTCAGGATAGATT
TAAACAATCGTTGTCATCAAGGTACTTGGGTTATCTCCTTAATACGTTTGTATAGTTGCTTGGTTTTAACGACCGCTTACAATCGCAAATATTTGTAAAC
ATACTAAGGAGATATTTAAAATGTATCATAATTTCATCGGTATTGATATATCAAAGAATGATTTTGTAGTAGCAATTCATGGTAAGAAAAAGACTTTTAA
ATACCTTAATAACTTAACTGGCTTTGATGAACTTTTATCAGATCATCCTATACTCAAGGATAAATCTTTTGTAGTTGTTGAAACTACCGGAGGCTATGAA
AAAGCTTTACTTGAATATTTAATAACTAAAAATATAGTTGTTCACAGAGCTAATACTAGAATAGTTAAACATTTTATTCGCTCTACAGGTCAATTAGGTA
AATCAGATAATATTGATGCTTTTGGACTAGCTAAGTATGGGTATGAAAGACACCGTGACCTAGAATTTTATCAACCTAATGATGATAAAATGCAAAAGCT
TATAAAATATATTCTTAGAAAACAAGATATTAAAAAACAGTTAACAGCTGAAAAAAATAGATATCAAGCACCAGACCAAAAATATACAAAAGATTCTCAC
CAAAGAATGATAGAGTTCTATAAACAAGAAATTATGATTATAGAAAGCCTTATAAATGAGTTAGTCGATGATTGCCAATACTTAGCAAAAGCTAGAGATC
TATTAGTTAAAGAGGTTACTGGTCTAGGAAATGCTACAGCCACATCTTTACTTGCTTTGATGCCTGAGTTAGGAAACTTAAACCGTAAACAAGTGGCTTC
TTTAGCAGGAGTAGCTCCATATCCGTATGAAAGTGGCAAGAAAGTTGGCTATAGAAAGACTTACGGCGGTAGAGCTGATTTAAAACCTATATTATTTATG
TCAGCATTAACTGCTGCTAGAAGTAAAGGTAAACTTGGAATATTTTATAGAGACCTTGTTGAAAAGGGTAAAAAGAAGATGGTAGCCCTTGTAGCTGTTA
TGAGAAAAATTATAGTCATTGCTAATGCTAAAATTAGAGATCTAAAAAGAGATTTGAAGATTTTATAAATAAATTAGCAACATAGTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa2211168+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MYHNFIGIDISKNDFVVAIHGKKKTFKYLNNLTGFDELLSDHPILKDKSFVVVETTGGYEKALLEYLITKNIVVHRANTRIVKHFIRSTGQLGKSDNIDA
FGLAKYGYERHRDLEFYQPNDDKMQKLIKYILRKQDIKKQLTAEKNRYQAPDQKYTKDSHQRMIEFYKQEIMIIESLINELVDDCQYLAKARDLLVKEVT
GLGNATATSLLALMPELGNLNRKQVASLAGVAPYPYESGKKVGYRKTYGGRADLKPILFMSALTAARSKGKLGIFYRDLVEKGKKKMVALVAVMRKIIVI
ANAKIRDLKRDLKIL

 

Blast result :
Comments
ISFop3 is 65% aa similar to ISWpi12.
There is an empty site in Francisella sp. MA067296 (CP016930).
References
1] Elizabeth Dietrich (2018) Direct submission.