ISFop3
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP022377 | ND | Francisella opportunistica | Francisella sp. MA067296 Francisella opportunistica Francisella opportunistica PA05-1188 Francisella sp. PA05-1188 |
DNA section
IS Length : 1187 bp
Ends
Left end : TGTAAGTTAAATTCTTAGTATAATGTGTTTACCAAGGAGTTAAATCAAGACTATTTTAATAGTTTTGATTATAACCCAAGCGACCGGTTCAGGATAGATT
Right end : CTTGTAGCTGTTATGAGAAAAATTATAGTCATTGCTAATGCTAAAATTAGAGATCTAAAAAGAGATTTGAAGATTTTATAAATAAATTAGCAACATAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAAGTTCAG | gat | GACGGTTGTG | 3 |
DNA sequence
TGTAAGTTAAATTCTTAGTATAATGTGTTTACCAAGGAGTTAAATCAAGACTATTTTAATAGTTTTGATTATAACCCAAGCGACCGGTTCAGGATAGATT
TAAACAATCGTTGTCATCAAGGTACTTGGGTTATCTCCTTAATACGTTTGTATAGTTGCTTGGTTTTAACGACCGCTTACAATCGCAAATATTTGTAAAC
ATACTAAGGAGATATTTAAAATGTATCATAATTTCATCGGTATTGATATATCAAAGAATGATTTTGTAGTAGCAATTCATGGTAAGAAAAAGACTTTTAA
ATACCTTAATAACTTAACTGGCTTTGATGAACTTTTATCAGATCATCCTATACTCAAGGATAAATCTTTTGTAGTTGTTGAAACTACCGGAGGCTATGAA
AAAGCTTTACTTGAATATTTAATAACTAAAAATATAGTTGTTCACAGAGCTAATACTAGAATAGTTAAACATTTTATTCGCTCTACAGGTCAATTAGGTA
AATCAGATAATATTGATGCTTTTGGACTAGCTAAGTATGGGTATGAAAGACACCGTGACCTAGAATTTTATCAACCTAATGATGATAAAATGCAAAAGCT
TATAAAATATATTCTTAGAAAACAAGATATTAAAAAACAGTTAACAGCTGAAAAAAATAGATATCAAGCACCAGACCAAAAATATACAAAAGATTCTCAC
CAAAGAATGATAGAGTTCTATAAACAAGAAATTATGATTATAGAAAGCCTTATAAATGAGTTAGTCGATGATTGCCAATACTTAGCAAAAGCTAGAGATC
TATTAGTTAAAGAGGTTACTGGTCTAGGAAATGCTACAGCCACATCTTTACTTGCTTTGATGCCTGAGTTAGGAAACTTAAACCGTAAACAAGTGGCTTC
TTTAGCAGGAGTAGCTCCATATCCGTATGAAAGTGGCAAGAAAGTTGGCTATAGAAAGACTTACGGCGGTAGAGCTGATTTAAAACCTATATTATTTATG
TCAGCATTAACTGCTGCTAGAAGTAAAGGTAAACTTGGAATATTTTATAGAGACCTTGTTGAAAAGGGTAAAAAGAAGATGGTAGCCCTTGTAGCTGTTA
TGAGAAAAATTATAGTCATTGCTAATGCTAAAATTAGAGATCTAAAAAGAGATTTGAAGATTTTATAAATAAATTAGCAACATAGTT
TAAACAATCGTTGTCATCAAGGTACTTGGGTTATCTCCTTAATACGTTTGTATAGTTGCTTGGTTTTAACGACCGCTTACAATCGCAAATATTTGTAAAC
ATACTAAGGAGATATTTAAAATGTATCATAATTTCATCGGTATTGATATATCAAAGAATGATTTTGTAGTAGCAATTCATGGTAAGAAAAAGACTTTTAA
ATACCTTAATAACTTAACTGGCTTTGATGAACTTTTATCAGATCATCCTATACTCAAGGATAAATCTTTTGTAGTTGTTGAAACTACCGGAGGCTATGAA
AAAGCTTTACTTGAATATTTAATAACTAAAAATATAGTTGTTCACAGAGCTAATACTAGAATAGTTAAACATTTTATTCGCTCTACAGGTCAATTAGGTA
AATCAGATAATATTGATGCTTTTGGACTAGCTAAGTATGGGTATGAAAGACACCGTGACCTAGAATTTTATCAACCTAATGATGATAAAATGCAAAAGCT
TATAAAATATATTCTTAGAAAACAAGATATTAAAAAACAGTTAACAGCTGAAAAAAATAGATATCAAGCACCAGACCAAAAATATACAAAAGATTCTCAC
CAAAGAATGATAGAGTTCTATAAACAAGAAATTATGATTATAGAAAGCCTTATAAATGAGTTAGTCGATGATTGCCAATACTTAGCAAAAGCTAGAGATC
TATTAGTTAAAGAGGTTACTGGTCTAGGAAATGCTACAGCCACATCTTTACTTGCTTTGATGCCTGAGTTAGGAAACTTAAACCGTAAACAAGTGGCTTC
TTTAGCAGGAGTAGCTCCATATCCGTATGAAAGTGGCAAGAAAGTTGGCTATAGAAAGACTTACGGCGGTAGAGCTGATTTAAAACCTATATTATTTATG
TCAGCATTAACTGCTGCTAGAAGTAAAGGTAAACTTGGAATATTTTATAGAGACCTTGTTGAAAAGGGTAAAAAGAAGATGGTAGCCCTTGTAGCTGTTA
TGAGAAAAATTATAGTCATTGCTAATGCTAAAATTAGAGATCTAAAAAGAGATTTGAAGATTTTATAAATAAATTAGCAACATAGTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 221 | 1168 | + | No |
Chemistry : DEDD
ORF sequence :
MYHNFIGIDISKNDFVVAIHGKKKTFKYLNNLTGFDELLSDHPILKDKSFVVVETTGGYEKALLEYLITKNIVVHRANTRIVKHFIRSTGQLGKSDNIDA
FGLAKYGYERHRDLEFYQPNDDKMQKLIKYILRKQDIKKQLTAEKNRYQAPDQKYTKDSHQRMIEFYKQEIMIIESLINELVDDCQYLAKARDLLVKEVT
GLGNATATSLLALMPELGNLNRKQVASLAGVAPYPYESGKKVGYRKTYGGRADLKPILFMSALTAARSKGKLGIFYRDLVEKGKKKMVALVAVMRKIIVI
ANAKIRDLKRDLKIL
FGLAKYGYERHRDLEFYQPNDDKMQKLIKYILRKQDIKKQLTAEKNRYQAPDQKYTKDSHQRMIEFYKQEIMIIESLINELVDDCQYLAKARDLLVKEVT
GLGNATATSLLALMPELGNLNRKQVASLAGVAPYPYESGKKVGYRKTYGGRADLKPILFMSALTAARSKGKLGIFYRDLVEKGKKKMVALVAVMRKIIVI
ANAKIRDLKRDLKIL
Blast result :
Comments
ISFop3 is 65% aa similar to ISWpi12.
There is an empty site in Francisella sp. MA067296 (CP016930).
There is an empty site in Francisella sp. MA067296 (CP016930).
References
1] Elizabeth Dietrich (2018) Direct submission.