ISFop1
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP022377 | ND | Francisella opportunistica | Francisella opportunistica Francisella opportunistica PA05-1188 Francisella sp. PA05-1188 |
DNA section
IS Length : 1133 bp
Ends
IR Length : 12/15
IRL : CCAAACAAAAAACATTCTCATACTTATGTTATAATGTAATTAAGATAACT
IRR : CCAATCCAAATACATGATTAGGTAAACATCCATTTTCTAGAGCAGATAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGAGCGTTTAA | TA | TAAGGTTTCTAAT | 2 |
ACAGTTGAGTTA | ta | TTACATAAACAAA | 2 |
DNA sequence
CCAAACAAAAAACATTCTCATACTTATGTTATAATGTAATTAAGATAACTATTTAATAATACCCATGCCTAGACCTATTAAGTTACCAGTAGATTTTGAC
AAGTACGATTATGCTGGCCTATCAAAAAAAGAGTCAAACCATAAAAACAAGATAAGACTGTTAGCAATGTCAAATATAAAAGATGGAATGAGTTTGCAAG
ATACTGGTAAAGTTTTAAAAACACCCTGGAAAACTATACAAACATGGCTACAGAACTTTAGAAAATATGGCATATCTAGCTTATATGTGAAAACCACAAA
ATATAAACCACCTAAAATAACGGAGGAAGTTAAGGTTTGGATTTCTAATTTCATGAAAACCTTATATAGTAATCAGGTTGGAGGTAGTATTACAGGTAAA
CAATTATTATGTTTAGTAAAACAGCATTTTGCTATAGAATGTTGTTTGCAAACTATATACAACACCCTACATAGCTTAAATCTTAGCTGGATAAGCTGTA
GATCTAAGCATCCAAGATCAGACATAGAAGTTCAAGAATTATATAAAAAAACTTTGAAAGTTATGTCAGAAAATTAATCCCAGAGAATGTTGATATATCT
ACTGTAGATATATGGGTTCAAGATGAGTCAAGAGTTGGTCAGCAAGGTAGCTTAACAAGAATATGGGCTCCAACGGGAACAAGACCACGCAAGGTTAAGC
AGGGACAGTTTATCTCTACATATATCTATGGTGCAGCATGTGCAAAGTCTAGAGATAGTTTTGGATTGATACTTCCAACTGCAAATACAATTGCTATGCA
AACCTACTTAAATCAATTATCAAATCATATTGCTGCTGGTCGACATATAGCTTTGGTTGTAGATAATGCAGGCTGGCACACCTCAAAGCAATTAGATATA
CCAAAAAATATTACTTTGATACCATTACCTCCATACTCTCCTGAACTTAACCCTATGGAGCAGGTATGGGAATGGATGAAAAATAACTATCTATCAAATA
TTTGCTTTGACAGTTACAATGACATTCTTGAAAAATTAACTATTGCATGGAATCATTTTTCATCTAATGCTGAATTGGTGAAATCTATCTGCTCTAGAAA
ATGGATGTTTACCTAATCATGTATTTGGATTGG
AAGTACGATTATGCTGGCCTATCAAAAAAAGAGTCAAACCATAAAAACAAGATAAGACTGTTAGCAATGTCAAATATAAAAGATGGAATGAGTTTGCAAG
ATACTGGTAAAGTTTTAAAAACACCCTGGAAAACTATACAAACATGGCTACAGAACTTTAGAAAATATGGCATATCTAGCTTATATGTGAAAACCACAAA
ATATAAACCACCTAAAATAACGGAGGAAGTTAAGGTTTGGATTTCTAATTTCATGAAAACCTTATATAGTAATCAGGTTGGAGGTAGTATTACAGGTAAA
CAATTATTATGTTTAGTAAAACAGCATTTTGCTATAGAATGTTGTTTGCAAACTATATACAACACCCTACATAGCTTAAATCTTAGCTGGATAAGCTGTA
GATCTAAGCATCCAAGATCAGACATAGAAGTTCAAGAATTATATAAAAAAACTTTGAAAGTTATGTCAGAAAATTAATCCCAGAGAATGTTGATATATCT
ACTGTAGATATATGGGTTCAAGATGAGTCAAGAGTTGGTCAGCAAGGTAGCTTAACAAGAATATGGGCTCCAACGGGAACAAGACCACGCAAGGTTAAGC
AGGGACAGTTTATCTCTACATATATCTATGGTGCAGCATGTGCAAAGTCTAGAGATAGTTTTGGATTGATACTTCCAACTGCAAATACAATTGCTATGCA
AACCTACTTAAATCAATTATCAAATCATATTGCTGCTGGTCGACATATAGCTTTGGTTGTAGATAATGCAGGCTGGCACACCTCAAAGCAATTAGATATA
CCAAAAAATATTACTTTGATACCATTACCTCCATACTCTCCTGAACTTAACCCTATGGAGCAGGTATGGGAATGGATGAAAAATAACTATCTATCAAATA
TTTGCTTTGACAGTTACAATGACATTCTTGAAAAATTAACTATTGCATGGAATCATTTTTCATCTAATGCTGAATTGGTGAAATCTATCTGCTCTAGAAA
ATGGATGTTTACCTAATCATGTATTTGGATTGG
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
513 bp | 170 aa | 65 | 577 | + | No |
Description : First part of the transposase
ORF sequence :
MPRPIKLPVDFDKYDYAGLSKKESNHKNKIRLLAMSNIKDGMSLQDTGKVLKTPWKTIQTWLQNFRKYGISSLYVKTTKYKPPKITEEVKVWISNFMKTL
YSNQVGGSITGKQLLCLVKQHFAIECCLQTIYNTLHSLNLSWISCRSKHPRSDIEVQELYKKTLKVMSEN
YSNQVGGSITGKQLLCLVKQHFAIECCLQTIYNTLHSLNLSWISCRSKHPRSDIEVQELYKKTLKVMSEN
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
570 bp | 189 aa | 547 | 1116 | + | No |
Description : Second part of the transposase
ORF sequence :
KNFESYVRKLIPENVDISTVDIWVQDESRVGQQGSLTRIWAPTGTRPRKVKQGQFISTYIYGAACAKSRDSFGLILPTANTIAMQTYLNQLSNHIAAGRH
IALVVDNAGWHTSKQLDIPKNITLIPLPPYSPELNPMEQVWEWMKNNYLSNICFDSYNDILEKLTIAWNHFSSNAELVKSICSRKWMFT
IALVVDNAGWHTSKQLDIPKNITLIPLPPYSPELNPMEQVWEWMKNNYLSNICFDSYNDILEKLTIAWNHFSSNAELVKSICSRKWMFT
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1052 bp | 351 aa | 65 | 1116 | + | Yes |
Chemistry : DDE
ORF sequence :
MPRPIKLPVDFDKYDYAGLSKKESNHKNKIRLLAMSNIKDGMSLQDTGKVLKTPWKTIQTWLQNFRKYGISSLYVKTTKYKPPKITEEVKVWISNFMKTL
YSNQVGGSITGKQLLCLVKQHFAIECCLQTIYNTLHSLNLSWISCRSKHPRSDIEVQELYKKKNFESYVRKLIPENVDISTVDIWVQDESRVGQQGSLTR
IWAPTGTRPRKVKQGQFISTYIYGAACAKSRDSFGLILPTANTIAMQTYLNQLSNHIAAGRHIALVVDNAGWHTSKQLDIPKNITLIPLPPYSPELNPME
QVWEWMKNNYLSNICFDSYNDILEKLTIAWNHFSSNAELVKSICSRKWMFT
YSNQVGGSITGKQLLCLVKQHFAIECCLQTIYNTLHSLNLSWISCRSKHPRSDIEVQELYKKKNFESYVRKLIPENVDISTVDIWVQDESRVGQQGSLTR
IWAPTGTRPRKVKQGQFISTYIYGAACAKSRDSFGLILPTANTIAMQTYLNQLSNHIAAGRHIALVVDNAGWHTSKQLDIPKNITLIPLPPYSPELNPME
QVWEWMKNNYLSNICFDSYNDILEKLTIAWNHFSSNAELVKSICSRKWMFT
Blast result :
Comments
ISFop1 is 59% aa similar to ISEcret5.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References