ISPpu31

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP009975 ND Pseudomonas putida
Pseudomonas putida plasmid pTTS12
Pseudomonas putida S12
DNA section
IS Length : 1377 bp

Ends


IR Length : 13

IRL : AATGAGATGGACTCCTCCCTCCTACGGCGTCATTGCGCCAGACTGAAGGT
IRR : TATATGGACTCCTCCCGTTTTGCCAGTGAAATAATCTGCCTCTGAACCTA

Comments : IRL:AATGAGATGGACTCCTCCC IRR:---TATATGGACTCCTCCC IRs are not at the termini of the sequence.

Insertion site


Left flankDirect repeatRight flankDR Length
CCCCGCATGACTCGTAGCCCCGGATGCAATCCGGGATGAG0

DNA sequence

AATGAGATGGACTCCTCCCTCCTACGGCGTCATTGCGCCAGACTGAAGGTTACGAAACAAACAATCCCGGAGGGGGAGCCCGCATGAAACTTAAACGCAT
AGGCGTGGATTTGGCAAAGCAGGTTTTTCAAGTTCATGGTGTCGACAGCCATGAGCAGGTCAAATGCCGCAAGCAACTCAAACGGCATCAGATGCTGGAT
TTTTTCCGCCAACTGGAGCCGTGTGTGGTGGCGATGGAGGCCTGTGGCAGCGCGCATTACTGGGCCCGTGAATTAGGCAAGCTGGGGCATGAGGTGCGTT
TAATTGCTCCGCAGTTCGTCAAGCCTTACGTGAAAGGCGGCAAGAACGACGCGAACGATGCGCAGGCAATTTGTGAAGCGGCCAGCAGGCCCACCATGCG
TTATGTCGAGGTCAAGACAGTAGAGCAACAGGCGAGCCAGTCGGTGCATCGGATCAGAGGTCGGCTGATCAAGGCTCGAACAGCATTAGTCAACGAAGTT
CGTGGGTTGCTGGCCGAGTTTGGTTTGATCGAATCACGCAAAGGCGTTGCGGCAACCCGCGAACTACTGTGTCGGGCGATCGATGATTCAGATAGCAGCA
TGCCTGGCTCGATGCGAGAGCTGCTGAGGGGGTTGAGCGAAGAGTTGCAAGGGTATGACGAGCGCTTGAAAAAGCTGGAACAACTGATCCAGCGCGAGGC
GCGCGAGGATGAGCGGGTCAGACGCTTAATGAAGATCGAGGGGCTCGGCCCGATCAGTGCCACGGCCATCGTCAGTGCTGTTGGCGATGCCAGACAGTTT
GCCAGTGGCAGGCAATTCGCGGCCTGGCTGGGACTGGTGCCCAGTCAATACTCCACAGGGGGCAAGGAGCGCCTTGGGGGTATCAGCAAGCGCGGAGACA
AATACTTGCGCACGTTGCTGATCCACGGATCGCGCTCAGTGCTCAAGCACTGCCAGAGCAAGACGGACAAGCGCAGTGATTGGCTGAGCCAGCTAATGTG
CCGACGCAACAAGAACATCGCCACGGTAGCCTTGGCGAACAAGAATGCCCGGATTATCTGGGCGATCCTCAGCAAGGGTGAACAGTATCAGCCTTGCTGA
ACAGCAAAGCGCAACACCTGGAGACGCAACGTAGTAGAGATCCACTCGATTGCACAGTGACATGAACTGATGACGAACCGGTCGCACCGACCTGTGTGTA
ACCTGCTGCATCCATCGGCCCTCTGCTTTGCAAGGCCGCTAGCCCGGTTAGGCGCACAGGAGCGAAATTCATCATGGCTCAAGGCTAACGCCTTATCAGA
AGTCGAATATACGGAAGCAGTCGTACCTAGGTTCAGAGGCAGATTATTTCACTGGCAAAACGGGAGGAGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa841100+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKLKRIGVDLAKQVFQVHGVDSHEQVKCRKQLKRHQMLDFFRQLEPCVVAMEACGSAHYWARELGKLGHEVRLIAPQFVKPYVKGGKNDANDAQAICEAA
SRPTMRYVEVKTVEQQASQSVHRIRGRLIKARTALVNEVRGLLAEFGLIESRKGVAATRELLCRAIDDSDSSMPGSMRELLRGLSEELQGYDERLKKLEQ
LIQREAREDERVRRLMKIEGLGPISATAIVSAVGDARQFASGRQFAAWLGLVPSQYSTGGKERLGGISKRGDKYLRTLLIHGSRSVLKHCQSKTDKRSDW
LSQLMCRRNKNIATVALANKNARIIWAILSKGEQYQPC

 

Blast result :
Comments
ISPpu31 is 87% (transposase) aa similar to ISAzvi2.
References
1] Dongsheng Zhou (2019) Direct submission.
2] Kuepper,J., Ruijssenaars,H.J., Blank,L.M., de Winde,J.H. and Wierckx,N. (2014) Direct GenBank submission.