ISPpu31
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP009975 | ND | Pseudomonas putida | Pseudomonas putida plasmid pTTS12 Pseudomonas putida S12 |
DNA section
IS Length : 1377 bp
Ends
IR Length : 13
IRL : AATGAGATGGACTCCTCCCTCCTACGGCGTCATTGCGCCAGACTGAAGGT
IRR : TATATGGACTCCTCCCGTTTTGCCAGTGAAATAATCTGCCTCTGAACCTA
Comments : IRL:AATGAGATGGACTCCTCCC IRR:---TATATGGACTCCTCCC IRs are not at the termini of the sequence.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCCGCATGACTCGTAGCCC | CGGATGCAATCCGGGATGAG | 0 |
DNA sequence
AATGAGATGGACTCCTCCCTCCTACGGCGTCATTGCGCCAGACTGAAGGTTACGAAACAAACAATCCCGGAGGGGGAGCCCGCATGAAACTTAAACGCAT
AGGCGTGGATTTGGCAAAGCAGGTTTTTCAAGTTCATGGTGTCGACAGCCATGAGCAGGTCAAATGCCGCAAGCAACTCAAACGGCATCAGATGCTGGAT
TTTTTCCGCCAACTGGAGCCGTGTGTGGTGGCGATGGAGGCCTGTGGCAGCGCGCATTACTGGGCCCGTGAATTAGGCAAGCTGGGGCATGAGGTGCGTT
TAATTGCTCCGCAGTTCGTCAAGCCTTACGTGAAAGGCGGCAAGAACGACGCGAACGATGCGCAGGCAATTTGTGAAGCGGCCAGCAGGCCCACCATGCG
TTATGTCGAGGTCAAGACAGTAGAGCAACAGGCGAGCCAGTCGGTGCATCGGATCAGAGGTCGGCTGATCAAGGCTCGAACAGCATTAGTCAACGAAGTT
CGTGGGTTGCTGGCCGAGTTTGGTTTGATCGAATCACGCAAAGGCGTTGCGGCAACCCGCGAACTACTGTGTCGGGCGATCGATGATTCAGATAGCAGCA
TGCCTGGCTCGATGCGAGAGCTGCTGAGGGGGTTGAGCGAAGAGTTGCAAGGGTATGACGAGCGCTTGAAAAAGCTGGAACAACTGATCCAGCGCGAGGC
GCGCGAGGATGAGCGGGTCAGACGCTTAATGAAGATCGAGGGGCTCGGCCCGATCAGTGCCACGGCCATCGTCAGTGCTGTTGGCGATGCCAGACAGTTT
GCCAGTGGCAGGCAATTCGCGGCCTGGCTGGGACTGGTGCCCAGTCAATACTCCACAGGGGGCAAGGAGCGCCTTGGGGGTATCAGCAAGCGCGGAGACA
AATACTTGCGCACGTTGCTGATCCACGGATCGCGCTCAGTGCTCAAGCACTGCCAGAGCAAGACGGACAAGCGCAGTGATTGGCTGAGCCAGCTAATGTG
CCGACGCAACAAGAACATCGCCACGGTAGCCTTGGCGAACAAGAATGCCCGGATTATCTGGGCGATCCTCAGCAAGGGTGAACAGTATCAGCCTTGCTGA
ACAGCAAAGCGCAACACCTGGAGACGCAACGTAGTAGAGATCCACTCGATTGCACAGTGACATGAACTGATGACGAACCGGTCGCACCGACCTGTGTGTA
ACCTGCTGCATCCATCGGCCCTCTGCTTTGCAAGGCCGCTAGCCCGGTTAGGCGCACAGGAGCGAAATTCATCATGGCTCAAGGCTAACGCCTTATCAGA
AGTCGAATATACGGAAGCAGTCGTACCTAGGTTCAGAGGCAGATTATTTCACTGGCAAAACGGGAGGAGTCCATATA
AGGCGTGGATTTGGCAAAGCAGGTTTTTCAAGTTCATGGTGTCGACAGCCATGAGCAGGTCAAATGCCGCAAGCAACTCAAACGGCATCAGATGCTGGAT
TTTTTCCGCCAACTGGAGCCGTGTGTGGTGGCGATGGAGGCCTGTGGCAGCGCGCATTACTGGGCCCGTGAATTAGGCAAGCTGGGGCATGAGGTGCGTT
TAATTGCTCCGCAGTTCGTCAAGCCTTACGTGAAAGGCGGCAAGAACGACGCGAACGATGCGCAGGCAATTTGTGAAGCGGCCAGCAGGCCCACCATGCG
TTATGTCGAGGTCAAGACAGTAGAGCAACAGGCGAGCCAGTCGGTGCATCGGATCAGAGGTCGGCTGATCAAGGCTCGAACAGCATTAGTCAACGAAGTT
CGTGGGTTGCTGGCCGAGTTTGGTTTGATCGAATCACGCAAAGGCGTTGCGGCAACCCGCGAACTACTGTGTCGGGCGATCGATGATTCAGATAGCAGCA
TGCCTGGCTCGATGCGAGAGCTGCTGAGGGGGTTGAGCGAAGAGTTGCAAGGGTATGACGAGCGCTTGAAAAAGCTGGAACAACTGATCCAGCGCGAGGC
GCGCGAGGATGAGCGGGTCAGACGCTTAATGAAGATCGAGGGGCTCGGCCCGATCAGTGCCACGGCCATCGTCAGTGCTGTTGGCGATGCCAGACAGTTT
GCCAGTGGCAGGCAATTCGCGGCCTGGCTGGGACTGGTGCCCAGTCAATACTCCACAGGGGGCAAGGAGCGCCTTGGGGGTATCAGCAAGCGCGGAGACA
AATACTTGCGCACGTTGCTGATCCACGGATCGCGCTCAGTGCTCAAGCACTGCCAGAGCAAGACGGACAAGCGCAGTGATTGGCTGAGCCAGCTAATGTG
CCGACGCAACAAGAACATCGCCACGGTAGCCTTGGCGAACAAGAATGCCCGGATTATCTGGGCGATCCTCAGCAAGGGTGAACAGTATCAGCCTTGCTGA
ACAGCAAAGCGCAACACCTGGAGACGCAACGTAGTAGAGATCCACTCGATTGCACAGTGACATGAACTGATGACGAACCGGTCGCACCGACCTGTGTGTA
ACCTGCTGCATCCATCGGCCCTCTGCTTTGCAAGGCCGCTAGCCCGGTTAGGCGCACAGGAGCGAAATTCATCATGGCTCAAGGCTAACGCCTTATCAGA
AGTCGAATATACGGAAGCAGTCGTACCTAGGTTCAGAGGCAGATTATTTCACTGGCAAAACGGGAGGAGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 84 | 1100 | + | No |
Chemistry : DDE
ORF sequence :
MKLKRIGVDLAKQVFQVHGVDSHEQVKCRKQLKRHQMLDFFRQLEPCVVAMEACGSAHYWARELGKLGHEVRLIAPQFVKPYVKGGKNDANDAQAICEAA
SRPTMRYVEVKTVEQQASQSVHRIRGRLIKARTALVNEVRGLLAEFGLIESRKGVAATRELLCRAIDDSDSSMPGSMRELLRGLSEELQGYDERLKKLEQ
LIQREAREDERVRRLMKIEGLGPISATAIVSAVGDARQFASGRQFAAWLGLVPSQYSTGGKERLGGISKRGDKYLRTLLIHGSRSVLKHCQSKTDKRSDW
LSQLMCRRNKNIATVALANKNARIIWAILSKGEQYQPC
SRPTMRYVEVKTVEQQASQSVHRIRGRLIKARTALVNEVRGLLAEFGLIESRKGVAATRELLCRAIDDSDSSMPGSMRELLRGLSEELQGYDERLKKLEQ
LIQREAREDERVRRLMKIEGLGPISATAIVSAVGDARQFASGRQFAAWLGLVPSQYSTGGKERLGGISKRGDKYLRTLLIHGSRSVLKHCQSKTDKRSDW
LSQLMCRRNKNIATVALANKNARIIWAILSKGEQYQPC
Blast result :
Comments
ISPpu31 is 87% (transposase) aa similar to ISAzvi2.
References
1] Dongsheng Zhou (2019) Direct submission.
2] Kuepper,J., Ruijssenaars,H.J., Blank,L.M., de Winde,J.H. and Wierckx,N. (2014) Direct GenBank submission.
2] Kuepper,J., Ruijssenaars,H.J., Blank,L.M., de Winde,J.H. and Wierckx,N. (2014) Direct GenBank submission.