ISPa109

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa 1705-19119
DNA section
IS Length : 2051 bp

Ends


IR Length : 22/25

IRL : GTAAGCGCTCCACAAACCCCACCTTCATTTGAACTGTCCGCTTGCCGATG
IRR : GTAAGCGATCCACGAACCCCGTCTTTCAATAGCCGGAGCGGATGCTTACT

Insertion site


Left flankDirect repeatRight flankDR Length
GTTCGCCCAGCTTCTGTATGGAACGGGC8

DNA sequence

GTAAGCGCTCCACAAACCCCACCTTCATTTGAACTGTCCGCTTGCCGATGCTGGGCTCCCGTTTTCCCAGTGGAGCCCCGTCATGATGCGTCCGGACGCC
AAGGTCAAAGCCGTCTACCTCTATCCGAAGCCTGTCGATTTCCGTAAGTCCATTGATGGCCTGGCGGCGCTGGTGGAGTTGGATATCAAGGTGGCCGTGT
TCGACCCGGTGTTGTTCGTCTTCCTCAACAAAACCCGCAACCGGGTGAAGATCCTCTACTGGGAGCGCAACGGCTTCTGTCTGTGGCTCAAGCGCCTGCA
GGCCGAGCGCTTCAAGACCAAGCCCGATGCTGAAGAACCCATCGTGTTGACGGTGCGAGAGCTGAATCAACTGCTGGCAGGTTTCGACCTCTGGGGGAAC
CGGGCGCACAAGGTGCTGACCCCGCGCTTTGTGAGCTGAGCCGGTATAATCCGGCGCCATGAAATCTGGCGCAGACTCCCTTCCCGACGATCCGTTATTG
CTCAAGCAACTCTTGCTGGCGGCACGCGAGCAGATGTCTGCCAAAGATGCGCGGATAGGACAGCTTCAGGAACAGGTCGCCCTGCTGCGGCAAAAACTGT
TCTCGCCAAAGTCCGAGCGCAGCCCCGAGGATGCCGACTCCCCTCAACTGGCCATGTTCAACGAGGCTGAGGAGTTGCTCGAAGAGCCTGCCGGCGGATC
GAGTGAGGCCGAAGCCGAAGCAGTCGTCCCCCCAGTGAAGCGCCGTGGCAAGCGCAAGTCTCTTCCAGCCGAGCTGCCACGCGTGGAAATCGTCCACGAG
TTGCCTGAGCACGAGCGCATCTGTGCCTGCGGCGCCTGCAAACAGGTGATCGGCGAGGAAACCAGCGAACAGCTGGAGATCATCCCGATGCAGGTGCGGG
TCATCCGCCACATCCGCAAGACCTACGCCTGCAAGGCCTGCGAAACCGCTCCCGTCACCGCCGACAAGCCAGCCCAACTGATCGAGAAAAGCCTGGCCAG
TCCCAGCGTGCTGGCCATGCTGCTGACCACCAAGTACGCCGATGGCATCCCGCTGTACCGTTTCGAGAAGATGCTCAGCCGCCATGGTATCGACATCCCC
CGCCAGACCCTGGCGCGCTGGGTGATCCAGTCCGGCGAACAGTTGCAGCCCCTGCTCAACCTCCTGCGCGACCAGTTGCTGGGCTACCCGGTGCTGCACT
GCGATGAAACCCGGCTCCAGGTACTGCATGAACCCGGGCGAGATCCCAGCGCGCAGTCCTGGATGTGGGTGCAAAGCGGCGGCCCACCGGAGCAGCCTGT
CGTCCTGTTCGACTACAGCACCAGCCGTGCGCAGGAGGTACCGCTGCGCCTGCTCGCCGGCTATCGCGGCTATCTGATGACCGACGACTACGCCGGCTAC
AACGCCGTGGCCGCGCAAGATGGCATCGAGCGCCTGGCCTGCTGGGCTCACGCCCGGCGCAAATTCATCGAGGCGCAGAAAGTGCAGCCCAAGGGCAAGA
TCGGACGCGCCGACATGGCCTTGAACCTGATCAACAAGCTCTATGGCATCGAGCGCGATCACCAGGACAGCGGCGAACTGGAGCGCCATGCCGTACGACA
GCAGCGCAGCCTGCCGATCCTGGAACAACTCAAGGCCTGGCTGGACAAGACCCAGCCACAGGTCACCGCCCAGAACGCCCTGGGCAAGGCGGTGAACTAC
CTGGCCAGCAACTGGAGCCGGCTCGTGCGCTATGTCGAAGGCGGGCATCTGCCCATCGACAACAACCGCGCCGAGAACGCCATTCGCCCCTTCGTGATCG
GCCGCAAGAACTGGCTATTCAGCGACACACCCAAGGGCGCCACGGCCAGTGCACAGATTTACAGCCTGATCGAAACCGCCAAGGCCAATGGGCGAGAACC
CTATGCCTGGCTGCGTCATGTGCTGGAGCGCCTGCCGGCCGCCAACCACGTCGAGGATTACGAAGCGCTGTTGCCGTGGAACTGCACGCCAGCCTCGCCA
CAGTAAGCATCCGCTCCGGCTATTGAAAGACGGGGTTCGTGGATCGCTTAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
357 bp118 aa83439+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MMRPDAKVKAVYLYPKPVDFRKSIDGLAALVELDIKVAVFDPVLFVFLNKTRNRVKILYWERNGFCLWLKRLQAERFKTKPDAEEPIVLTVRELNQLLAG
FDLWGNRAHKVLTPRFVS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1546 bp515 aa4592004+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKSGADSLPDDPLLLKQLLLAAREQMSAKDARIGQLQEQVALLRQKLFSPKSERSPEDADSPQLAMFNEAEELLEEPAGGSSEAEAEAVVPPVKRRGKRK
SLPAELPRVEIVHELPEHERICACGACKQVIGEETSEQLEIIPMQVRVIRHIRKTYACKACETAPVTADKPAQLIEKSLASPSVLAMLLTTKYADGIPLY
RFEKMLSRHGIDIPRQTLARWVIQSGEQLQPLLNLLRDQLLGYPVLHCDETRLQVLHEPGRDPSAQSWMWVQSGGPPEQPVVLFDYSTSRAQEVPLRLLA
GYRGYLMTDDYAGYNAVAAQDGIERLACWAHARRKFIEAQKVQPKGKIGRADMALNLINKLYGIERDHQDSGELERHAVRQQRSLPILEQLKAWLDKTQP
QVTAQNALGKAVNYLASNWSRLVRYVEGGHLPIDNNRAENAIRPFVIGRKNWLFSDTPKGATASAQIYSLIETAKANGREPYAWLRHVLERLPAANHVED
YEALLPWNCTPASPQ

 

Blast result :
Comments
ISPa109 is 89% aa similar to ISPa82.
References
1] Xiaoyuan Jiang (2019) Direct submission.