ISPa109
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa 1705-19119 |
DNA section
IS Length : 2051 bp
Ends
IR Length : 22/25
IRL : GTAAGCGCTCCACAAACCCCACCTTCATTTGAACTGTCCGCTTGCCGATG
IRR : GTAAGCGATCCACGAACCCCGTCTTTCAATAGCCGGAGCGGATGCTTACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTCGCCCAG | CTTCTGTA | TGGAACGGGC | 8 |
DNA sequence
GTAAGCGCTCCACAAACCCCACCTTCATTTGAACTGTCCGCTTGCCGATGCTGGGCTCCCGTTTTCCCAGTGGAGCCCCGTCATGATGCGTCCGGACGCC
AAGGTCAAAGCCGTCTACCTCTATCCGAAGCCTGTCGATTTCCGTAAGTCCATTGATGGCCTGGCGGCGCTGGTGGAGTTGGATATCAAGGTGGCCGTGT
TCGACCCGGTGTTGTTCGTCTTCCTCAACAAAACCCGCAACCGGGTGAAGATCCTCTACTGGGAGCGCAACGGCTTCTGTCTGTGGCTCAAGCGCCTGCA
GGCCGAGCGCTTCAAGACCAAGCCCGATGCTGAAGAACCCATCGTGTTGACGGTGCGAGAGCTGAATCAACTGCTGGCAGGTTTCGACCTCTGGGGGAAC
CGGGCGCACAAGGTGCTGACCCCGCGCTTTGTGAGCTGAGCCGGTATAATCCGGCGCCATGAAATCTGGCGCAGACTCCCTTCCCGACGATCCGTTATTG
CTCAAGCAACTCTTGCTGGCGGCACGCGAGCAGATGTCTGCCAAAGATGCGCGGATAGGACAGCTTCAGGAACAGGTCGCCCTGCTGCGGCAAAAACTGT
TCTCGCCAAAGTCCGAGCGCAGCCCCGAGGATGCCGACTCCCCTCAACTGGCCATGTTCAACGAGGCTGAGGAGTTGCTCGAAGAGCCTGCCGGCGGATC
GAGTGAGGCCGAAGCCGAAGCAGTCGTCCCCCCAGTGAAGCGCCGTGGCAAGCGCAAGTCTCTTCCAGCCGAGCTGCCACGCGTGGAAATCGTCCACGAG
TTGCCTGAGCACGAGCGCATCTGTGCCTGCGGCGCCTGCAAACAGGTGATCGGCGAGGAAACCAGCGAACAGCTGGAGATCATCCCGATGCAGGTGCGGG
TCATCCGCCACATCCGCAAGACCTACGCCTGCAAGGCCTGCGAAACCGCTCCCGTCACCGCCGACAAGCCAGCCCAACTGATCGAGAAAAGCCTGGCCAG
TCCCAGCGTGCTGGCCATGCTGCTGACCACCAAGTACGCCGATGGCATCCCGCTGTACCGTTTCGAGAAGATGCTCAGCCGCCATGGTATCGACATCCCC
CGCCAGACCCTGGCGCGCTGGGTGATCCAGTCCGGCGAACAGTTGCAGCCCCTGCTCAACCTCCTGCGCGACCAGTTGCTGGGCTACCCGGTGCTGCACT
GCGATGAAACCCGGCTCCAGGTACTGCATGAACCCGGGCGAGATCCCAGCGCGCAGTCCTGGATGTGGGTGCAAAGCGGCGGCCCACCGGAGCAGCCTGT
CGTCCTGTTCGACTACAGCACCAGCCGTGCGCAGGAGGTACCGCTGCGCCTGCTCGCCGGCTATCGCGGCTATCTGATGACCGACGACTACGCCGGCTAC
AACGCCGTGGCCGCGCAAGATGGCATCGAGCGCCTGGCCTGCTGGGCTCACGCCCGGCGCAAATTCATCGAGGCGCAGAAAGTGCAGCCCAAGGGCAAGA
TCGGACGCGCCGACATGGCCTTGAACCTGATCAACAAGCTCTATGGCATCGAGCGCGATCACCAGGACAGCGGCGAACTGGAGCGCCATGCCGTACGACA
GCAGCGCAGCCTGCCGATCCTGGAACAACTCAAGGCCTGGCTGGACAAGACCCAGCCACAGGTCACCGCCCAGAACGCCCTGGGCAAGGCGGTGAACTAC
CTGGCCAGCAACTGGAGCCGGCTCGTGCGCTATGTCGAAGGCGGGCATCTGCCCATCGACAACAACCGCGCCGAGAACGCCATTCGCCCCTTCGTGATCG
GCCGCAAGAACTGGCTATTCAGCGACACACCCAAGGGCGCCACGGCCAGTGCACAGATTTACAGCCTGATCGAAACCGCCAAGGCCAATGGGCGAGAACC
CTATGCCTGGCTGCGTCATGTGCTGGAGCGCCTGCCGGCCGCCAACCACGTCGAGGATTACGAAGCGCTGTTGCCGTGGAACTGCACGCCAGCCTCGCCA
CAGTAAGCATCCGCTCCGGCTATTGAAAGACGGGGTTCGTGGATCGCTTAC
AAGGTCAAAGCCGTCTACCTCTATCCGAAGCCTGTCGATTTCCGTAAGTCCATTGATGGCCTGGCGGCGCTGGTGGAGTTGGATATCAAGGTGGCCGTGT
TCGACCCGGTGTTGTTCGTCTTCCTCAACAAAACCCGCAACCGGGTGAAGATCCTCTACTGGGAGCGCAACGGCTTCTGTCTGTGGCTCAAGCGCCTGCA
GGCCGAGCGCTTCAAGACCAAGCCCGATGCTGAAGAACCCATCGTGTTGACGGTGCGAGAGCTGAATCAACTGCTGGCAGGTTTCGACCTCTGGGGGAAC
CGGGCGCACAAGGTGCTGACCCCGCGCTTTGTGAGCTGAGCCGGTATAATCCGGCGCCATGAAATCTGGCGCAGACTCCCTTCCCGACGATCCGTTATTG
CTCAAGCAACTCTTGCTGGCGGCACGCGAGCAGATGTCTGCCAAAGATGCGCGGATAGGACAGCTTCAGGAACAGGTCGCCCTGCTGCGGCAAAAACTGT
TCTCGCCAAAGTCCGAGCGCAGCCCCGAGGATGCCGACTCCCCTCAACTGGCCATGTTCAACGAGGCTGAGGAGTTGCTCGAAGAGCCTGCCGGCGGATC
GAGTGAGGCCGAAGCCGAAGCAGTCGTCCCCCCAGTGAAGCGCCGTGGCAAGCGCAAGTCTCTTCCAGCCGAGCTGCCACGCGTGGAAATCGTCCACGAG
TTGCCTGAGCACGAGCGCATCTGTGCCTGCGGCGCCTGCAAACAGGTGATCGGCGAGGAAACCAGCGAACAGCTGGAGATCATCCCGATGCAGGTGCGGG
TCATCCGCCACATCCGCAAGACCTACGCCTGCAAGGCCTGCGAAACCGCTCCCGTCACCGCCGACAAGCCAGCCCAACTGATCGAGAAAAGCCTGGCCAG
TCCCAGCGTGCTGGCCATGCTGCTGACCACCAAGTACGCCGATGGCATCCCGCTGTACCGTTTCGAGAAGATGCTCAGCCGCCATGGTATCGACATCCCC
CGCCAGACCCTGGCGCGCTGGGTGATCCAGTCCGGCGAACAGTTGCAGCCCCTGCTCAACCTCCTGCGCGACCAGTTGCTGGGCTACCCGGTGCTGCACT
GCGATGAAACCCGGCTCCAGGTACTGCATGAACCCGGGCGAGATCCCAGCGCGCAGTCCTGGATGTGGGTGCAAAGCGGCGGCCCACCGGAGCAGCCTGT
CGTCCTGTTCGACTACAGCACCAGCCGTGCGCAGGAGGTACCGCTGCGCCTGCTCGCCGGCTATCGCGGCTATCTGATGACCGACGACTACGCCGGCTAC
AACGCCGTGGCCGCGCAAGATGGCATCGAGCGCCTGGCCTGCTGGGCTCACGCCCGGCGCAAATTCATCGAGGCGCAGAAAGTGCAGCCCAAGGGCAAGA
TCGGACGCGCCGACATGGCCTTGAACCTGATCAACAAGCTCTATGGCATCGAGCGCGATCACCAGGACAGCGGCGAACTGGAGCGCCATGCCGTACGACA
GCAGCGCAGCCTGCCGATCCTGGAACAACTCAAGGCCTGGCTGGACAAGACCCAGCCACAGGTCACCGCCCAGAACGCCCTGGGCAAGGCGGTGAACTAC
CTGGCCAGCAACTGGAGCCGGCTCGTGCGCTATGTCGAAGGCGGGCATCTGCCCATCGACAACAACCGCGCCGAGAACGCCATTCGCCCCTTCGTGATCG
GCCGCAAGAACTGGCTATTCAGCGACACACCCAAGGGCGCCACGGCCAGTGCACAGATTTACAGCCTGATCGAAACCGCCAAGGCCAATGGGCGAGAACC
CTATGCCTGGCTGCGTCATGTGCTGGAGCGCCTGCCGGCCGCCAACCACGTCGAGGATTACGAAGCGCTGTTGCCGTGGAACTGCACGCCAGCCTCGCCA
CAGTAAGCATCCGCTCCGGCTATTGAAAGACGGGGTTCGTGGATCGCTTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
357 bp | 118 aa | 83 | 439 | + | No |
AG : IS66 TnpA
ORF sequence :
MMRPDAKVKAVYLYPKPVDFRKSIDGLAALVELDIKVAVFDPVLFVFLNKTRNRVKILYWERNGFCLWLKRLQAERFKTKPDAEEPIVLTVRELNQLLAG
FDLWGNRAHKVLTPRFVS
FDLWGNRAHKVLTPRFVS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1546 bp | 515 aa | 459 | 2004 | + | No |
Chemistry : DDE
ORF sequence :
MKSGADSLPDDPLLLKQLLLAAREQMSAKDARIGQLQEQVALLRQKLFSPKSERSPEDADSPQLAMFNEAEELLEEPAGGSSEAEAEAVVPPVKRRGKRK
SLPAELPRVEIVHELPEHERICACGACKQVIGEETSEQLEIIPMQVRVIRHIRKTYACKACETAPVTADKPAQLIEKSLASPSVLAMLLTTKYADGIPLY
RFEKMLSRHGIDIPRQTLARWVIQSGEQLQPLLNLLRDQLLGYPVLHCDETRLQVLHEPGRDPSAQSWMWVQSGGPPEQPVVLFDYSTSRAQEVPLRLLA
GYRGYLMTDDYAGYNAVAAQDGIERLACWAHARRKFIEAQKVQPKGKIGRADMALNLINKLYGIERDHQDSGELERHAVRQQRSLPILEQLKAWLDKTQP
QVTAQNALGKAVNYLASNWSRLVRYVEGGHLPIDNNRAENAIRPFVIGRKNWLFSDTPKGATASAQIYSLIETAKANGREPYAWLRHVLERLPAANHVED
YEALLPWNCTPASPQ
SLPAELPRVEIVHELPEHERICACGACKQVIGEETSEQLEIIPMQVRVIRHIRKTYACKACETAPVTADKPAQLIEKSLASPSVLAMLLTTKYADGIPLY
RFEKMLSRHGIDIPRQTLARWVIQSGEQLQPLLNLLRDQLLGYPVLHCDETRLQVLHEPGRDPSAQSWMWVQSGGPPEQPVVLFDYSTSRAQEVPLRLLA
GYRGYLMTDDYAGYNAVAAQDGIERLACWAHARRKFIEAQKVQPKGKIGRADMALNLINKLYGIERDHQDSGELERHAVRQQRSLPILEQLKAWLDKTQP
QVTAQNALGKAVNYLASNWSRLVRYVEGGHLPIDNNRAENAIRPFVIGRKNWLFSDTPKGATASAQIYSLIETAKANGREPYAWLRHVLERLPAANHVED
YEALLPWNCTPASPQ
Blast result :
Comments
ISPa109 is 89% aa similar to ISPa82.
References
1] Xiaoyuan Jiang (2019) Direct submission.