ISH1-8
- Family IS200/IS605
- Group IS605
Isoform Synonym(s) ISH1.8
Accession number | Transposition | Origin | Host |
---|---|---|---|
MK002701 | ND | Halobacterium salinarum | Halobacterium salinarum PHH1 Halobacterium salinarum phage phi-H |
DNA section
IS Length : 1887 bp
Ends
Left end : CTTGATTCAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGTGTTCCGACGCTCAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTAAG II struct. : Yes
Right end : CAGATGACGCTCGGAGAGGTCGGGTCGGAACCCACTGCCGGTCGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCCCTCGCTCAAGTG | CTAT | TCCGAAGTGGCTCGGCGG | TCAC |
DNA sequence
CTTGATTCAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGTGTTCCGACGCTCAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTAAG
CTCTGTGCAACAAACCACTCGGTTTCTCCCTGCTGAATACCCCACGTCACAAGAGTTATCTGAATTGGGTGTCTCGTATCTGCTAAGGCCAAATGGAGTA
TCATCTGCAAACCGGGTCGCACACAGTGTACGCGCTTCAGTACCACTTCGTGACTGTCACGAAGTACCGGGCCGATATTCTCACGTATGAGCGGCTGGAG
CGTGTGGCTGAAATCGCCCACGATATTGCAGACGACTTCGAGGCCGACATCAAGAACGTGGACGGTGGTACCGACCACGTTCACATCCTGTTTCAGACCA
AACCAACCACAGACCTCACGAAGTTCATCAACTCACTCAAAGGTGTCACGTCCCGACGGATACGGTCGGAGTTTCCCGAAGTAACACAGACGCTCGAAGA
TGCGTTCTGGCAACCGGGATACTTCCTCGCCACGACCGGCCAAGTGAGCATTGACACGCTGATGGACTACGTGGACGACCAGTAGCATGACCGCGACAAC
CACAAAAACGCTGGAAGCTACACTCGCCCCGCCGACAGCCCACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGTGAGGGGCTACACGAAGCG
TTCGACGCGGGTGTGACACGATGACCGCCACAGGACGTGGTGACGCCCTACGACCTCCCGTATCAGGCGAAAGAGCTCTCTGCAACTACGTCCCACAACT
GCACGACACCTACAACGCACAGGAGTTAGACGACGACCACCCGGTTCGGCTTACCAACCAAGCCGCCGAGTTCGACCACTCGGCGGCGCGTGACTACGAG
TTCACATGGTGGGCACCGCAACCCGGTCGCGGGACGAATTTCTGGATACCGCTTCGTATCAACCCCGAACAAGACGGTCTGTGGCACGACCTCGTACACG
GTGAGGCGTCGGCAGGCCAACTCCGCCTGCAACGCCACCGCACGTCGTGGACGCTCCACGTCACTGTCGAGTTCCCGGTCGAACAACCGGACTATGAGCC
GACCGACGAGGATGTGACGCCAGTCGGCTTTGATATTGGCGAAGCACCTGCTCGCGGGCTGTGTGCAAGCAGGGCACTCCGA CTGACCCACTGCTCAT
CAACGGCGGCCGCGCTCGTCACCTCCGCAAAGAGATGTTCACAACGCTGAAGCGACTGCAAGAGCGTGACGCCGCCCAGTGGCGGATTGACGAGCGATTC
GACCACTACCAGAACGCACTCACAGACATCATCGAAAAGGCGTCTCGGCAAGCAATCGAGTACGCCTGCCGATTCGAGAAGCCTGTGGTCGTTCTGGAAG
ACCTCTCGTACATCCGCGAAGACCTCGACTACGGCGAATGGATGAACCGACGCCTCCACGCATGGGCGTTCGCTCGCTTGCAGGAGCGTATCGAGGACAA
AGCACGAGAGGCTGGCATCCCGGTCGAATACATTCGCCCGGAGTACACGAGGCAGACGTGCCACGAGTGCGGCCACATCGGGTATCGGGACGGCGATGAG
TTCCGGTGTCAGAACGACGAGTGTTGGGTATCGGAGTACCACGCAGACATCAACGCGGCGGTCAACATCGCTGACCGCCACGACCCGTGGGGTGAGAGCC
TGCCGCTGAAACCGGCGGGCGATGACATCTCACGGGATGGGAGCGCCTGTGACAGCGCCGCGACCCCCACCGAGCAGAGCCAACCACGGCAGATGACGCT
CGGAGAGGTCGGGTCGGAACCCACTGCCGGTCGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
CTCTGTGCAACAAACCACTCGGTTTCTCCCTGCTGAATACCCCACGTCACAAGAGTTATCTGAATTGGGTGTCTCGTATCTGCTAAGGCCAAATGGAGTA
TCATCTGCAAACCGGGTCGCACACAGTGTACGCGCTTCAGTACCACTTCGTGACTGTCACGAAGTACCGGGCCGATATTCTCACGTATGAGCGGCTGGAG
CGTGTGGCTGAAATCGCCCACGATATTGCAGACGACTTCGAGGCCGACATCAAGAACGTGGACGGTGGTACCGACCACGTTCACATCCTGTTTCAGACCA
AACCAACCACAGACCTCACGAAGTTCATCAACTCACTCAAAGGTGTCACGTCCCGACGGATACGGTCGGAGTTTCCCGAAGTAACACAGACGCTCGAAGA
TGCGTTCTGGCAACCGGGATACTTCCTCGCCACGACCGGCCAAGTGAGCATTGACACGCTGATGGACTACGTGGACGACCAGTAGCATGACCGCGACAAC
CACAAAAACGCTGGAAGCTACACTCGCCCCGCCGACAGCCCACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGTGAGGGGCTACACGAAGCG
TTCGACGCGGGTGTGACACGATGACCGCCACAGGACGTGGTGACGCCCTACGACCTCCCGTATCAGGCGAAAGAGCTCTCTGCAACTACGTCCCACAACT
GCACGACACCTACAACGCACAGGAGTTAGACGACGACCACCCGGTTCGGCTTACCAACCAAGCCGCCGAGTTCGACCACTCGGCGGCGCGTGACTACGAG
TTCACATGGTGGGCACCGCAACCCGGTCGCGGGACGAATTTCTGGATACCGCTTCGTATCAACCCCGAACAAGACGGTCTGTGGCACGACCTCGTACACG
GTGAGGCGTCGGCAGGCCAACTCCGCCTGCAACGCCACCGCACGTCGTGGACGCTCCACGTCACTGTCGAGTTCCCGGTCGAACAACCGGACTATGAGCC
GACCGACGAGGATGTGACGCCAGTCGGCTTTGATATTGGCGAAGCACCTGCTCGCGGGCTGTGTGCAAGCAGGGCACTCCGA CTGACCCACTGCTCAT
CAACGGCGGCCGCGCTCGTCACCTCCGCAAAGAGATGTTCACAACGCTGAAGCGACTGCAAGAGCGTGACGCCGCCCAGTGGCGGATTGACGAGCGATTC
GACCACTACCAGAACGCACTCACAGACATCATCGAAAAGGCGTCTCGGCAAGCAATCGAGTACGCCTGCCGATTCGAGAAGCCTGTGGTCGTTCTGGAAG
ACCTCTCGTACATCCGCGAAGACCTCGACTACGGCGAATGGATGAACCGACGCCTCCACGCATGGGCGTTCGCTCGCTTGCAGGAGCGTATCGAGGACAA
AGCACGAGAGGCTGGCATCCCGGTCGAATACATTCGCCCGGAGTACACGAGGCAGACGTGCCACGAGTGCGGCCACATCGGGTATCGGGACGGCGATGAG
TTCCGGTGTCAGAACGACGAGTGTTGGGTATCGGAGTACCACGCAGACATCAACGCGGCGGTCAACATCGCTGACCGCCACGACCCGTGGGGTGAGAGCC
TGCCGCTGAAACCGGCGGGCGATGACATCTCACGGGATGGGAGCGCCTGTGACAGCGCCGCGACCCCCACCGAGCAGAGCCAACCACGGCAGATGACGCT
CGGAGAGGTCGGGTCGGAACCCACTGCCGGTCGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
393 bp | 130 aa | 197 | 589 | + | No |
Chemistry : Y1
ORF sequence :
MEYHLQTGSHTVYALQYHFVTVTKYRADILTYERLERVAEIAHDIADDFEADIKNVDGGTDHVHILFQTKPTTDLTKFINSLKGVTSRRIRSEFPEVTQT
LEDAFWQPGYFLATTGQVSIDTLMDYVDDQ
LEDAFWQPGYFLATTGQVSIDTLMDYVDDQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
675 bp | 224 aa | 1165 | 1839 | + | No |
AG : TnpB
ORF sequence :
MCKQGTPTDPLLINGGRARHLRKEMFTTLKRLQERDAAQWRIDERFDHYQNALTDIIEKASRQAIEYACRFEKPVVVLEDLSYIREDLDYGEWMNRRLHA
WAFARLQERIEDKAREAGIPVEYIRPEYTRQTCHECGHIGYRDGDEFRCQNDECWVSEYHADINAAVNIADRHDPWGESLPLKPAGDDISRDGSACDSAA
TPTEQSQPRQMTLGEVGSEPTAGR
WAFARLQERIEDKAREAGIPVEYIRPEYTRQTCHECGHIGYRDGDEFRCQNDECWVSEYHADINAAVNIADRHDPWGESLPLKPAGDDISRDGSACDSAA
TPTEQSQPRQMTLGEVGSEPTAGR
Blast result :
Comments
References
1] Schnabel, H., Palm, P., Dick, K., and Grampp, P. (1984) EMBO J. 3, 1717-1722.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Dyall-Smith, M., Pfeifer, F., Witte, A., Oesterhelt, D., Pfeiffer, F. (2018) Genes 9, 493.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Dyall-Smith, M., Pfeifer, F., Witte, A., Oesterhelt, D., Pfeiffer, F. (2018) Genes 9, 493.