ISH1-8

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s) ISH1.8
Accession numberTranspositionOriginHost
MK002701 ND Halobacterium salinarum
Halobacterium salinarum PHH1
Halobacterium salinarum phage phi-H
DNA section
IS Length : 1887 bp

Ends


Left end : CTTGATTCAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGTGTTCCGACGCTCAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTAAG II struct. : Yes
Right end : CAGATGACGCTCGGAGAGGTCGGGTCGGAACCCACTGCCGGTCGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCCCTCGCTCAAGTGCTATTCCGAAGTGGCTCGGCGGTCAC

DNA sequence

CTTGATTCAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGTGTTCCGACGCTCAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTAAG
CTCTGTGCAACAAACCACTCGGTTTCTCCCTGCTGAATACCCCACGTCACAAGAGTTATCTGAATTGGGTGTCTCGTATCTGCTAAGGCCAAATGGAGTA
TCATCTGCAAACCGGGTCGCACACAGTGTACGCGCTTCAGTACCACTTCGTGACTGTCACGAAGTACCGGGCCGATATTCTCACGTATGAGCGGCTGGAG
CGTGTGGCTGAAATCGCCCACGATATTGCAGACGACTTCGAGGCCGACATCAAGAACGTGGACGGTGGTACCGACCACGTTCACATCCTGTTTCAGACCA
AACCAACCACAGACCTCACGAAGTTCATCAACTCACTCAAAGGTGTCACGTCCCGACGGATACGGTCGGAGTTTCCCGAAGTAACACAGACGCTCGAAGA
TGCGTTCTGGCAACCGGGATACTTCCTCGCCACGACCGGCCAAGTGAGCATTGACACGCTGATGGACTACGTGGACGACCAGTAGCATGACCGCGACAAC
CACAAAAACGCTGGAAGCTACACTCGCCCCGCCGACAGCCCACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGTGAGGGGCTACACGAAGCG
TTCGACGCGGGTGTGACACGATGACCGCCACAGGACGTGGTGACGCCCTACGACCTCCCGTATCAGGCGAAAGAGCTCTCTGCAACTACGTCCCACAACT
GCACGACACCTACAACGCACAGGAGTTAGACGACGACCACCCGGTTCGGCTTACCAACCAAGCCGCCGAGTTCGACCACTCGGCGGCGCGTGACTACGAG
TTCACATGGTGGGCACCGCAACCCGGTCGCGGGACGAATTTCTGGATACCGCTTCGTATCAACCCCGAACAAGACGGTCTGTGGCACGACCTCGTACACG
GTGAGGCGTCGGCAGGCCAACTCCGCCTGCAACGCCACCGCACGTCGTGGACGCTCCACGTCACTGTCGAGTTCCCGGTCGAACAACCGGACTATGAGCC
GACCGACGAGGATGTGACGCCAGTCGGCTTTGATATTGGCGAAGCACCTGCTCGCGGGCTGTGTGCAAGCAGGGCACTCCGA CTGACCCACTGCTCAT
CAACGGCGGCCGCGCTCGTCACCTCCGCAAAGAGATGTTCACAACGCTGAAGCGACTGCAAGAGCGTGACGCCGCCCAGTGGCGGATTGACGAGCGATTC
GACCACTACCAGAACGCACTCACAGACATCATCGAAAAGGCGTCTCGGCAAGCAATCGAGTACGCCTGCCGATTCGAGAAGCCTGTGGTCGTTCTGGAAG
ACCTCTCGTACATCCGCGAAGACCTCGACTACGGCGAATGGATGAACCGACGCCTCCACGCATGGGCGTTCGCTCGCTTGCAGGAGCGTATCGAGGACAA
AGCACGAGAGGCTGGCATCCCGGTCGAATACATTCGCCCGGAGTACACGAGGCAGACGTGCCACGAGTGCGGCCACATCGGGTATCGGGACGGCGATGAG
TTCCGGTGTCAGAACGACGAGTGTTGGGTATCGGAGTACCACGCAGACATCAACGCGGCGGTCAACATCGCTGACCGCCACGACCCGTGGGGTGAGAGCC
TGCCGCTGAAACCGGCGGGCGATGACATCTCACGGGATGGGAGCGCCTGTGACAGCGCCGCGACCCCCACCGAGCAGAGCCAACCACGGCAGATGACGCT
CGGAGAGGTCGGGTCGGAACCCACTGCCGGTCGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
393 bp130 aa197589+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEYHLQTGSHTVYALQYHFVTVTKYRADILTYERLERVAEIAHDIADDFEADIKNVDGGTDHVHILFQTKPTTDLTKFINSLKGVTSRRIRSEFPEVTQT
LEDAFWQPGYFLATTGQVSIDTLMDYVDDQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
675 bp224 aa11651839+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MCKQGTPTDPLLINGGRARHLRKEMFTTLKRLQERDAAQWRIDERFDHYQNALTDIIEKASRQAIEYACRFEKPVVVLEDLSYIREDLDYGEWMNRRLHA
WAFARLQERIEDKAREAGIPVEYIRPEYTRQTCHECGHIGYRDGDEFRCQNDECWVSEYHADINAAVNIADRHDPWGESLPLKPAGDDISRDGSACDSAA
TPTEQSQPRQMTLGEVGSEPTAGR

 

Blast result :
Comments
References
1] Schnabel, H., Palm, P., Dick, K., and Grampp, P. (1984) EMBO J. 3, 1717-1722.
2] Pfeifer, F. (1986) System. Appl. Microbiol. 7, 36-40.
3] Dyall-Smith, M., Pfeifer, F., Witte, A., Oesterhelt, D., Pfeiffer, F. (2018) Genes 9, 493.