ISPa108

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa RW109
DNA section
IS Length : 2642 bp

Ends


IR Length : 39/49

IRL : TGCGGATTTCGGAGCATCGTGACCGGCCGTTTCGGTTGATCGTGACCGGT
IRR : TGCGGATTTCGGTGAACGTGACCGAGCGTTTCGCTAATACGTGACCGGCT

Insertion site


Left flankDirect repeatRight flankDR Length
CCCCGACTCGGCAATTCCCTTCTTGGGC8
TTGGTGTGGCTCCTGTTCGCCATATTTTCGTGTG6

DNA sequence

TGCGGATTTCGGAGCATCGTGACCGGCCGTTTCGGTTGATCGTGACCGGTCATTTCGCTAACGCGTGACCGCTCATTTCGGTAGCAACGTGACCGATTTT
CCGCCTGCTCCGAAACAGGCGGTCACGGCTTACCGAAATCGCCGGTCACGGCTTAGCGAAAGCCTTCCTCTTCGTTGCGCATGACCTGATGCACCGCCAC
CCTCGCCCGATTTCGGGAGACGAGGGATGGCGGCGCCGCGAGTAGCCATGCGAAACATCAAAGAATGTCTGCGCCTCAAGCTCGAGGCCGGTTTGTCCCA
CGAGAAGATCGCCCGCGCCTTGCAGTTGTCCAAGGGCGTGGTCAGCAAGTACGTTACGGCGGCCCGGGTGGCCGGGCTGGACTGGCCGATGTTGGCAGCT
ATGGATGAGGCCACGTTGGCAGCCGCCTTGTTTGCGCCGACGCCACCGGGCAAGCCGCGCGGTGAGCGGGTACTGCCCGATGTGCTGAGCATCCACCGCG
AGCTGCGGCGCAAGGGCGTGACCTTGCAGCTGCTGTGGGAGGAGTATCTCGCCGCGCATGCGGGGCAGCCGACCTACCGCTACACCCAGTTCGTCGAGCA
CTACCGGCGTTACGCCCAGACGCTCAAACGTTCGATGCGCCAGGTGCACCGGGCGGGCGAGAAGCTGTTTATCGACTATGCCGGCCCGACGCTGCCGGTG
GTCGATCCAGACACCGGCGAAGTGCGCCGGGCGCATATCTTCGTCGCCGCCCTGGGCGCCTCGAATTACACCTATGCCTGCGCGACGCCGGGCGAAACCC
AAGTGGACTGGCTGACTTCGCTGGGCCAGGCGTTGACCTACTTCGGCGGCGTGCCGGAGATGGTCGTGCCGGACAATCCGCGCGCCCTGGTCGCGCTGCC
GGATCGTTACGAACCGGGCCTGAACCGAGCGGCGCTGGAGTGCGCCCGCCATTACGACACCGTGATGCTGCCGGCGCGGCCACGCAAACCCCAGGACAAG
GCCAAGGCCGAGGTGGCGGTGCAGGTGGTCGAGCGTTGGATCATGGCGCGCCTGCGCCACCGGCAGTTCTTCAGCCTGCATGCGCTTAACCAGGCCATCG
CCGAGCTGCTGGAGGATCTGAATCGGCGCCCGTTCAAGCGGCTCGATGGCTGCCGGCGCGACTGGTTCGAGCGCCTGGATCGGCCGGCCTTGCGAGCGCT
GCCGGTGCATCCCTACGAGGTCGCCACCTTCAAGCGCTGCAAGGTCAGCATCGACTACCACATCGAGGTCAATGGCAGCTTCTACAGCGTGCCCTCCGCC
CTGGCCCGGCAGAGCGTCGAGGTGCGGCTGACGGCGCACACCCTGGAAGTGCTGCATGGCAACCGACGGGTGGCCAGCCATGTGCTGCTGGGCCGTCGCG
GCGCCTACAGCACGCAACGCGAGCACATGCCCGCGGCGCACCAGGCGCATCGCGAATGGACGCCGCAACGCCTGCTCGACTGGGGCGAGCGGATCGGCCC
CTACACGCGCCAACTGATCGATCACCAGCTGACCCACAAGCCGCACCCGGAGATGGGCTACCGCGCCTGCCTTGGCTTGCTCTCGCTGGCCCGCCGCTAC
GGCAATGCACGGCTGGAAGCCGCCGCCGAGCGGGCCGTCCAACTGCGTGCCTTCACCGGGCGCAGCGTGCGCAACCTGCTCCAGCAAGGCCTGGATCAGC
AGCCGCTGCCCCAGCGTGCGGCTGCAACGGCCTTACCCGAGCACCACGAAAACGTCCGTGGCGCCGACTACTACCAACCCCCGCAACAGGAGCTATTCGA
TGATGCCGCAACACACCCTGAATCAACTGCACCAGCTACGCCTGGACGGCATGGCTCGCGCACTGGAGGAACAATGGACGCTGCCGGGCAGCCACAGCCT
GAGCTTCGATGAACGCCTCGGGCTGCTGCTCGACCGCGAACTGGCCTGGCGTGACAACCAGCGCCTGGTGCGACTGCGCAAGAAGGCCAAGCTCAAGTAC
GCCAACGCCTGCCTGGAAGATCTCGACCGCCGACCCGGCCGCGCCCTGGACGAACGCCTGATCGCCAGCCTGGCCGGCGGCGACTGGATCCGCCAGCAGC
ACAACCTGCTGCTGACCGGGCCGACCGGCGCCGGCAAGACCTGGCTGGCCTGCGCGCTGGGTAACCAAGCCTGCCGCCAGGGCTACAGCACCCTGTATCT
GCGCACCCCGCGCCTGCTGGAGCAACTGCGTATCGCCCACGGCGACGGCAGCTTCGGGCGCACCCTGCAACAGCTGGCCAAGGTCGACGTCCTGGTGCTG
GACGACTGGGCGCTGGCCCCGTTGGAGGAAGGGGCTCGGCATGACCTGCTGGAAGTGATCGACGACCGCGCCGGCAACCGCTCCACCATCCTGACCAGCC
AACTGCCGCTCGAACACTGGCATGGCTGGATCAACGACCCGACCCTGGCCGACGCCATCCTCGACCGCCTGGTGCACAACGCTTACCGACTGACGATGAA
GGGCGAGTCACTGCGCCGGAAAAAAGCCGAGGAACAAACCGCATCGTGACCGATGCGATTACAATCCAAAACCCGCGCAACCGGGGTGGAAGAGCCGGTC
ACGTATTAGCGAAACGCTCGGTCACGTTCACCGAAATCCGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1686 bp561 aa2271912+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAAPRVAMRNIKECLRLKLEAGLSHEKIARALQLSKGVVSKYVTAARVAGLDWPMLAAMDEATLAAALFAPTPPGKPRGERVLPDVLSIHRELRRKGVTL
QLLWEEYLAAHAGQPTYRYTQFVEHYRRYAQTLKRSMRQVHRAGEKLFIDYAGPTLPVVDPDTGEVRRAHIFVAALGASNYTYACATPGETQVDWLTSLG
QALTYFGGVPEMVVPDNPRALVALPDRYEPGLNRAALECARHYDTVMLPARPRKPQDKAKAEVAVQVVERWIMARLRHRQFFSLHALNQAIAELLEDLNR
RPFKRLDGCRRDWFERLDRPALRALPVHPYEVATFKRCKVSIDYHIEVNGSFYSVPSALARQSVEVRLTAHTLEVLHGNRRVASHVLLGRRGAYSTQREH
MPAAHQAHREWTPQRLLDWGERIGPYTRQLIDHQLTHKPHPEMGYRACLGLLSLARRYGNARLEAAAERAVQLRAFTGRSVRNLLQQGLDQQPLPQRAAA
TALPEHHENVRGADYYQPPQQELFDDAATHPESTAPATPGRHGSRTGGTMDAAGQPQPELR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
699 bp232 aa18512549+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MARALEEQWTLPGSHSLSFDERLGLLLDRELAWRDNQRLVRLRKKAKLKYANACLEDLDRRPGRALDERLIASLAGGDWIRQQHNLLLTGPTGAGKTWLA
CALGNQACRQGYSTLYLRTPRLLEQLRIAHGDGSFGRTLQQLAKVDVLVLDDWALAPLEEGARHDLLEVIDDRAGNRSTILTSQLPLEHWHGWINDPTLA
DAILDRLVHNAYRLTMKGESLRRKKAEEQTAS

 

Blast result :
Comments
ISPa108 is 94% (transposase) aa similar to IS1474.
References
1] Xiaoyuan Jiang (2019) Direct submission.
2] Green,A. (2017) Direct GenBank submission.