ISPa106
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LT969519 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa RW109 |
DNA section
IS Length : 1214 bp
Ends
IR Length : 18/25
IRL : GGAGCCGCTGCAGAAATAGCCAACTGTCCCAGCGCTTGGCACACTGAGCG
IRR : GGAGGCGCTGAATAAATTCCCTATTCCGTGCCTCGTCGCGTTTTCAGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACTACTCCGGCTTG | CTAG | ATAGAGCCATCCTTC | 4 |
DNA sequence
GGAGCCGCTGCAGAAATAGCCAACTGTCCCAGCGCTTGGCACACTGAGCGCCCTTCCGACGACCTGCCTTGACCCATCCGAATCGCCCCATGCAGAAGAC
CTTTTCCGAGCTGGAGTATGCCGGCAAGAAGAAACTGACCCGCCGGGATCGCTTCCTGGCGGATCTTGAACAGTTGGTGCCTTGGGCGCTGCTGGAAGCG
CAAATAGCGCCGTTTTACGCCGACTCTTCAGGCAAGCGGGGACGGCCGGCGATCGGCTTGTCGCGCATGCTGCGAATGTATGTCGTGCAGCAGTGTTTTG
GCTTCTCCGATGAGGGCACCGAGGATGCTGTCTATGACAGCCAGGCGATTCGCAGCTTTGTGGGCATCGATCTCAGCCGCGAGTCAGCGCCAGATGCCAC
CACCTTGCTGCGTTTTCGTCGACTGCTGGAAGCCCATCAACTGACCCGCGTGCTGTTTGAAACGATCAACCAGCATCTGGCCAGCCGTGGTCTGCTGCTC
AAGGAAGGCACCATCGTCGATGCCACGCTTATCGCCGCACCGCCCTCGACCAAGAACCGCGCGGGCAAGCGCGACCCGGAAATGCATCAGGCCAAGAAAG
GCAACCAGTGGCACTTCGGCATGAAGGCCCATATCGGCGTCGACGCGGCGACAGGCCTGGTACACAGCGTGGTTGGCACGGCGGCCAACGTGGCGGATGT
GACCCAGGTCGACAAGCTGCTGCATGGCGAGGAGTCGTATATCTCGGGCGACTCCGGCTACACCGGTGCCGCCAAACGGCCGGAGCATGCGGGTCGCGCA
GTTATCTGGTCAATTGCTGCGCGGCCCAGTAGTTACAAGCCGTACGGCAAAGGCAGCGTGCTGTACCGGGCCAAGCGCAAGATCGAATACGCCAAGGCGC
AATTACGTGCCAAGGTTGAGCATCCGTTTCAAGTGATCAAGGTGCGTTTCAAGCATCGCAAGGCTCGCTACCGCGGCCTGGAGAAGAATACCGCGCAGTT
GTTCAGCCTGTTCGGGCTGGCGAATCTGATGCTGGCCAAACGGTATTTGCAGCAAGCGGCAGGATAAGTCCGTCTGCAACACGGGCGCTGACCCGCCAAT
CAGCGAAATCGAGGCTGAAACCGGCCCCGAAATGACAGAGCACGCCCCCTGGGTTGTAAAAATCAGGCTGAAAACGCGACGAGGCACGGAATAGGGAATT
TATTCAGCGCCTCC
CTTTTCCGAGCTGGAGTATGCCGGCAAGAAGAAACTGACCCGCCGGGATCGCTTCCTGGCGGATCTTGAACAGTTGGTGCCTTGGGCGCTGCTGGAAGCG
CAAATAGCGCCGTTTTACGCCGACTCTTCAGGCAAGCGGGGACGGCCGGCGATCGGCTTGTCGCGCATGCTGCGAATGTATGTCGTGCAGCAGTGTTTTG
GCTTCTCCGATGAGGGCACCGAGGATGCTGTCTATGACAGCCAGGCGATTCGCAGCTTTGTGGGCATCGATCTCAGCCGCGAGTCAGCGCCAGATGCCAC
CACCTTGCTGCGTTTTCGTCGACTGCTGGAAGCCCATCAACTGACCCGCGTGCTGTTTGAAACGATCAACCAGCATCTGGCCAGCCGTGGTCTGCTGCTC
AAGGAAGGCACCATCGTCGATGCCACGCTTATCGCCGCACCGCCCTCGACCAAGAACCGCGCGGGCAAGCGCGACCCGGAAATGCATCAGGCCAAGAAAG
GCAACCAGTGGCACTTCGGCATGAAGGCCCATATCGGCGTCGACGCGGCGACAGGCCTGGTACACAGCGTGGTTGGCACGGCGGCCAACGTGGCGGATGT
GACCCAGGTCGACAAGCTGCTGCATGGCGAGGAGTCGTATATCTCGGGCGACTCCGGCTACACCGGTGCCGCCAAACGGCCGGAGCATGCGGGTCGCGCA
GTTATCTGGTCAATTGCTGCGCGGCCCAGTAGTTACAAGCCGTACGGCAAAGGCAGCGTGCTGTACCGGGCCAAGCGCAAGATCGAATACGCCAAGGCGC
AATTACGTGCCAAGGTTGAGCATCCGTTTCAAGTGATCAAGGTGCGTTTCAAGCATCGCAAGGCTCGCTACCGCGGCCTGGAGAAGAATACCGCGCAGTT
GTTCAGCCTGTTCGGGCTGGCGAATCTGATGCTGGCCAAACGGTATTTGCAGCAAGCGGCAGGATAAGTCCGTCTGCAACACGGGCGCTGACCCGCCAAT
CAGCGAAATCGAGGCTGAAACCGGCCCCGAAATGACAGAGCACGCCCCCTGGGTTGTAAAAATCAGGCTGAAAACGCGACGAGGCACGGAATAGGGAATT
TATTCAGCGCCTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 89 | 1066 | + | No |
Chemistry : DDE
ORF sequence :
MQKTFSELEYAGKKKLTRRDRFLADLEQLVPWALLEAQIAPFYADSSGKRGRPAIGLSRMLRMYVVQQCFGFSDEGTEDAVYDSQAIRSFVGIDLSRESA
PDATTLLRFRRLLEAHQLTRVLFETINQHLASRGLLLKEGTIVDATLIAAPPSTKNRAGKRDPEMHQAKKGNQWHFGMKAHIGVDAATGLVHSVVGTAAN
VADVTQVDKLLHGEESYISGDSGYTGAAKRPEHAGRAVIWSIAARPSSYKPYGKGSVLYRAKRKIEYAKAQLRAKVEHPFQVIKVRFKHRKARYRGLEKN
TAQLFSLFGLANLMLAKRYLQQAAG
PDATTLLRFRRLLEAHQLTRVLFETINQHLASRGLLLKEGTIVDATLIAAPPSTKNRAGKRDPEMHQAKKGNQWHFGMKAHIGVDAATGLVHSVVGTAAN
VADVTQVDKLLHGEESYISGDSGYTGAAKRPEHAGRAVIWSIAARPSSYKPYGKGSVLYRAKRKIEYAKAQLRAKVEHPFQVIKVRFKHRKARYRGLEKN
TAQLFSLFGLANLMLAKRYLQQAAG
Blast result :
Comments
ISPa106 is 95% aa similar to IS52.
References
1] Xiaoyuan Jiang (2019) Direct submission.
2] Green,A. (2017) Direct GenBank submission.
2] Green,A. (2017) Direct GenBank submission.