ISPa106

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT969519 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa RW109
DNA section
IS Length : 1214 bp

Ends


IR Length : 18/25

IRL : GGAGCCGCTGCAGAAATAGCCAACTGTCCCAGCGCTTGGCACACTGAGCG
IRR : GGAGGCGCTGAATAAATTCCCTATTCCGTGCCTCGTCGCGTTTTCAGCCT

Insertion site


Left flankDirect repeatRight flankDR Length
CACTACTCCGGCTTGCTAGATAGAGCCATCCTTC4

DNA sequence

GGAGCCGCTGCAGAAATAGCCAACTGTCCCAGCGCTTGGCACACTGAGCGCCCTTCCGACGACCTGCCTTGACCCATCCGAATCGCCCCATGCAGAAGAC
CTTTTCCGAGCTGGAGTATGCCGGCAAGAAGAAACTGACCCGCCGGGATCGCTTCCTGGCGGATCTTGAACAGTTGGTGCCTTGGGCGCTGCTGGAAGCG
CAAATAGCGCCGTTTTACGCCGACTCTTCAGGCAAGCGGGGACGGCCGGCGATCGGCTTGTCGCGCATGCTGCGAATGTATGTCGTGCAGCAGTGTTTTG
GCTTCTCCGATGAGGGCACCGAGGATGCTGTCTATGACAGCCAGGCGATTCGCAGCTTTGTGGGCATCGATCTCAGCCGCGAGTCAGCGCCAGATGCCAC
CACCTTGCTGCGTTTTCGTCGACTGCTGGAAGCCCATCAACTGACCCGCGTGCTGTTTGAAACGATCAACCAGCATCTGGCCAGCCGTGGTCTGCTGCTC
AAGGAAGGCACCATCGTCGATGCCACGCTTATCGCCGCACCGCCCTCGACCAAGAACCGCGCGGGCAAGCGCGACCCGGAAATGCATCAGGCCAAGAAAG
GCAACCAGTGGCACTTCGGCATGAAGGCCCATATCGGCGTCGACGCGGCGACAGGCCTGGTACACAGCGTGGTTGGCACGGCGGCCAACGTGGCGGATGT
GACCCAGGTCGACAAGCTGCTGCATGGCGAGGAGTCGTATATCTCGGGCGACTCCGGCTACACCGGTGCCGCCAAACGGCCGGAGCATGCGGGTCGCGCA
GTTATCTGGTCAATTGCTGCGCGGCCCAGTAGTTACAAGCCGTACGGCAAAGGCAGCGTGCTGTACCGGGCCAAGCGCAAGATCGAATACGCCAAGGCGC
AATTACGTGCCAAGGTTGAGCATCCGTTTCAAGTGATCAAGGTGCGTTTCAAGCATCGCAAGGCTCGCTACCGCGGCCTGGAGAAGAATACCGCGCAGTT
GTTCAGCCTGTTCGGGCTGGCGAATCTGATGCTGGCCAAACGGTATTTGCAGCAAGCGGCAGGATAAGTCCGTCTGCAACACGGGCGCTGACCCGCCAAT
CAGCGAAATCGAGGCTGAAACCGGCCCCGAAATGACAGAGCACGCCCCCTGGGTTGTAAAAATCAGGCTGAAAACGCGACGAGGCACGGAATAGGGAATT
TATTCAGCGCCTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa891066+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQKTFSELEYAGKKKLTRRDRFLADLEQLVPWALLEAQIAPFYADSSGKRGRPAIGLSRMLRMYVVQQCFGFSDEGTEDAVYDSQAIRSFVGIDLSRESA
PDATTLLRFRRLLEAHQLTRVLFETINQHLASRGLLLKEGTIVDATLIAAPPSTKNRAGKRDPEMHQAKKGNQWHFGMKAHIGVDAATGLVHSVVGTAAN
VADVTQVDKLLHGEESYISGDSGYTGAAKRPEHAGRAVIWSIAARPSSYKPYGKGSVLYRAKRKIEYAKAQLRAKVEHPFQVIKVRFKHRKARYRGLEKN
TAQLFSLFGLANLMLAKRYLQQAAG

 

Blast result :
Comments
ISPa106 is 95% aa similar to IS52.
References
1] Xiaoyuan Jiang (2019) Direct submission.
2] Green,A. (2017) Direct GenBank submission.