ISPsy46

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT963392 ND Pseudomonas syringae
Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid: P
DNA section
IS Length : 1210 bp

Ends


IR Length : 16/21

IRL : GGAGACGCTGAACAATTAACCCGTTCGCACCGTCTTCATTTCCAAGCCGG
IRR : GGAGGCGCTGCAAAAATAGCCAACTGTCCCCACCCTTGGCACACTAAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
CTACTTCAGACCTTCCCTAACTAGGCGTAGCAGCTGAAAT0
TGATCTTTCTAAAGATCTAACTAGTACCGCAGTCCTTCAC0
AAGCCACCTCGTCGGTCTAGTGTTGGTTTAGTTAGC4

DNA sequence

GGAGACGCTGAACAATTAACCCGTTCGCACCGTCTTCATTTCCAAGCCGGTTTTTTTCAACCTGCCGGCCTTGTTTTGCGTTTCTCGGGCAGATTTCTGC
CCTCCTTTTGCTGATTGGCGGGCCAGTCCCGCCTTTCAGACGGATTTATCCTGCCGCCTGTTGCAAATACCGCTTGGCCAGCATCAGATTGGCCAACCCA
AACAAACTGAACAACTGCGCTGTATTCTTTTCCAGCCCACGGTAGCGAACCTTGCGATGATTGAAGCGCACCTTGATTACCTGGAAGGGGTGCTCGACCT
TGGCACGCAGTTGCGCCTTGGCATATTCAATTTTACGCTTGACCCGATACAGCACGCTGCCTTCGCCGTGCTGCTTGTAACTGCTTGGCCGTGCTGCAAT
CGACCAGATAACGTCCCGTTCAGCATGCTCCGGTCGCTTGGCCGCACCGGTGTATCCAGCGTCACCCGAAACATAGGTTTCGTCACCGTGCAGCAACTGG
CCAACCTGGGTGACATCCGCCACGTTAGCGGCCGTCCCTACTACGCTGTGCACCAGCCCCGACGTGGCGTCTACACCAATGTGGGCCTTCATCCCAAAGT
GCCATTGATTGCCTTTCCTGGCCTGATGCATCTCAGGATCACGCTTGCCTTCTCGGTTCTTGACCGAGGGCGGCGCGGCGATCAGGGTAGCGTCGACGAT
AGTGCCTTCCTTGAGCAGCAGCCCCCGGCTGGCCAGATGCTGGTTAATCGTTTCAAACAGCAGCCGCGTTAGCTGATTGGCTTCCAGCAAGCGGCGAAAA
CGCAGCAAGGTGGTGGCATCTGGTGCCGACTCGCGACCCAGGTCGATACCCATAAAACCGCGGATGGCCTGGCTGTCGTAGACGGCATCTTCGCAACCTT
CATCGGAGAAACCGAAACACTGCTGCACGACGTACATGCGCAACATGCGCGACACCCCTATCGCAGGGCGTCCGCGCTTGCCTGCGGTGTTGCTATAAAA
CGGCGCCACTTGCGCCTCCAGATGGGCCCAGGGCACCAACTGTTCAAGGTCAGCCAGGAAGCGATCTCGGCGAGTCTGCTTTTTCTTGCCGGTATATTCG
AGTTCGGAGAAGGTCTTCTGCACGCGCGTAACGCTCACGGAGAGGGAGGCTGGTTGAAGGAACTTAGTGTGCCAAGGGTGGGGACAGTTGGCTATTTTTG
CAGCGCCTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
992 bp330 aa721063+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSVTRVQKTFSELEYTGKKKQTRRDRFLADLEQLVPWAHLEAQVAPFYSNTAGKRGRPAIGVSRMLRMYVVQQCFGFSDEGCEDAVYDSQAIRGFMGIDL
GRESAPDATTLLRFRRLLEANQLTRLLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQARKGNQWHFGMKAHIGVDATSGLVHSVV
GTAANVADVTQVGQLLHGDETYVSGDAGYTGAAKRPEHAERDVIWSIAARPSSYKQHGEGSVLYRVKRKIEYAKAQLRAKVEHPFQVIKVRFNHRKVRYR
GLEKNTAQLFSLFGLANLMLAKRYLQQAAG

 

Blast result :
Comments
ISPsy46 is 98% aa similar to IS52.
References
1] M. Chandler (2019) Direct submission.
2] Blom,J. (2017) Direct GenBank submission.