ISPsy46
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LT963392 | ND | Pseudomonas syringae | Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid: P |
DNA section
IS Length : 1210 bp
Ends
IR Length : 16/21
IRL : GGAGACGCTGAACAATTAACCCGTTCGCACCGTCTTCATTTCCAAGCCGG
IRR : GGAGGCGCTGCAAAAATAGCCAACTGTCCCCACCCTTGGCACACTAAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTACTTCAGACCTTCCCTAA | CTAGGCGTAGCAGCTGAAAT | 0 | |
TGATCTTTCTAAAGATCTAA | CTAGTACCGCAGTCCTTCAC | 0 | |
AAGCCACCTCGTCGGT | CTAG | TGTTGGTTTAGTTAGC | 4 |
DNA sequence
GGAGACGCTGAACAATTAACCCGTTCGCACCGTCTTCATTTCCAAGCCGGTTTTTTTCAACCTGCCGGCCTTGTTTTGCGTTTCTCGGGCAGATTTCTGC
CCTCCTTTTGCTGATTGGCGGGCCAGTCCCGCCTTTCAGACGGATTTATCCTGCCGCCTGTTGCAAATACCGCTTGGCCAGCATCAGATTGGCCAACCCA
AACAAACTGAACAACTGCGCTGTATTCTTTTCCAGCCCACGGTAGCGAACCTTGCGATGATTGAAGCGCACCTTGATTACCTGGAAGGGGTGCTCGACCT
TGGCACGCAGTTGCGCCTTGGCATATTCAATTTTACGCTTGACCCGATACAGCACGCTGCCTTCGCCGTGCTGCTTGTAACTGCTTGGCCGTGCTGCAAT
CGACCAGATAACGTCCCGTTCAGCATGCTCCGGTCGCTTGGCCGCACCGGTGTATCCAGCGTCACCCGAAACATAGGTTTCGTCACCGTGCAGCAACTGG
CCAACCTGGGTGACATCCGCCACGTTAGCGGCCGTCCCTACTACGCTGTGCACCAGCCCCGACGTGGCGTCTACACCAATGTGGGCCTTCATCCCAAAGT
GCCATTGATTGCCTTTCCTGGCCTGATGCATCTCAGGATCACGCTTGCCTTCTCGGTTCTTGACCGAGGGCGGCGCGGCGATCAGGGTAGCGTCGACGAT
AGTGCCTTCCTTGAGCAGCAGCCCCCGGCTGGCCAGATGCTGGTTAATCGTTTCAAACAGCAGCCGCGTTAGCTGATTGGCTTCCAGCAAGCGGCGAAAA
CGCAGCAAGGTGGTGGCATCTGGTGCCGACTCGCGACCCAGGTCGATACCCATAAAACCGCGGATGGCCTGGCTGTCGTAGACGGCATCTTCGCAACCTT
CATCGGAGAAACCGAAACACTGCTGCACGACGTACATGCGCAACATGCGCGACACCCCTATCGCAGGGCGTCCGCGCTTGCCTGCGGTGTTGCTATAAAA
CGGCGCCACTTGCGCCTCCAGATGGGCCCAGGGCACCAACTGTTCAAGGTCAGCCAGGAAGCGATCTCGGCGAGTCTGCTTTTTCTTGCCGGTATATTCG
AGTTCGGAGAAGGTCTTCTGCACGCGCGTAACGCTCACGGAGAGGGAGGCTGGTTGAAGGAACTTAGTGTGCCAAGGGTGGGGACAGTTGGCTATTTTTG
CAGCGCCTCC
CCTCCTTTTGCTGATTGGCGGGCCAGTCCCGCCTTTCAGACGGATTTATCCTGCCGCCTGTTGCAAATACCGCTTGGCCAGCATCAGATTGGCCAACCCA
AACAAACTGAACAACTGCGCTGTATTCTTTTCCAGCCCACGGTAGCGAACCTTGCGATGATTGAAGCGCACCTTGATTACCTGGAAGGGGTGCTCGACCT
TGGCACGCAGTTGCGCCTTGGCATATTCAATTTTACGCTTGACCCGATACAGCACGCTGCCTTCGCCGTGCTGCTTGTAACTGCTTGGCCGTGCTGCAAT
CGACCAGATAACGTCCCGTTCAGCATGCTCCGGTCGCTTGGCCGCACCGGTGTATCCAGCGTCACCCGAAACATAGGTTTCGTCACCGTGCAGCAACTGG
CCAACCTGGGTGACATCCGCCACGTTAGCGGCCGTCCCTACTACGCTGTGCACCAGCCCCGACGTGGCGTCTACACCAATGTGGGCCTTCATCCCAAAGT
GCCATTGATTGCCTTTCCTGGCCTGATGCATCTCAGGATCACGCTTGCCTTCTCGGTTCTTGACCGAGGGCGGCGCGGCGATCAGGGTAGCGTCGACGAT
AGTGCCTTCCTTGAGCAGCAGCCCCCGGCTGGCCAGATGCTGGTTAATCGTTTCAAACAGCAGCCGCGTTAGCTGATTGGCTTCCAGCAAGCGGCGAAAA
CGCAGCAAGGTGGTGGCATCTGGTGCCGACTCGCGACCCAGGTCGATACCCATAAAACCGCGGATGGCCTGGCTGTCGTAGACGGCATCTTCGCAACCTT
CATCGGAGAAACCGAAACACTGCTGCACGACGTACATGCGCAACATGCGCGACACCCCTATCGCAGGGCGTCCGCGCTTGCCTGCGGTGTTGCTATAAAA
CGGCGCCACTTGCGCCTCCAGATGGGCCCAGGGCACCAACTGTTCAAGGTCAGCCAGGAAGCGATCTCGGCGAGTCTGCTTTTTCTTGCCGGTATATTCG
AGTTCGGAGAAGGTCTTCTGCACGCGCGTAACGCTCACGGAGAGGGAGGCTGGTTGAAGGAACTTAGTGTGCCAAGGGTGGGGACAGTTGGCTATTTTTG
CAGCGCCTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
992 bp | 330 aa | 72 | 1063 | + | No |
Chemistry : DDE
ORF sequence :
MSVTRVQKTFSELEYTGKKKQTRRDRFLADLEQLVPWAHLEAQVAPFYSNTAGKRGRPAIGVSRMLRMYVVQQCFGFSDEGCEDAVYDSQAIRGFMGIDL
GRESAPDATTLLRFRRLLEANQLTRLLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQARKGNQWHFGMKAHIGVDATSGLVHSVV
GTAANVADVTQVGQLLHGDETYVSGDAGYTGAAKRPEHAERDVIWSIAARPSSYKQHGEGSVLYRVKRKIEYAKAQLRAKVEHPFQVIKVRFNHRKVRYR
GLEKNTAQLFSLFGLANLMLAKRYLQQAAG
GRESAPDATTLLRFRRLLEANQLTRLLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQARKGNQWHFGMKAHIGVDATSGLVHSVV
GTAANVADVTQVGQLLHGDETYVSGDAGYTGAAKRPEHAERDVIWSIAARPSSYKQHGEGSVLYRVKRKIEYAKAQLRAKVEHPFQVIKVRFNHRKVRYR
GLEKNTAQLFSLFGLANLMLAKRYLQQAAG
Blast result :
Comments
ISPsy46 is 98% aa similar to IS52.
References
1] M. Chandler (2019) Direct submission.
2] Blom,J. (2017) Direct GenBank submission.
2] Blom,J. (2017) Direct GenBank submission.