ISShal1

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
QUWK01000018 ND Sphaerochaeta halotolerans
Sphaerochaeta halotolerans 4-11
DNA section
IS Length : 1802 bp

Ends


IR Length : 28/34

IRL : TTAAATAACAATTTCCCAGAATCCAACACTATATAAACCTGCAAATCAGG
IRR : TTAAGTAACGATTTCCCAACTTTCAACACTATATGCTACTAAGAAGTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GTGAGTAAGCAAGAACATCTT0

DNA sequence

TTAAATAACAATTTCCCAGAATCCAACACTATATAAACCTGCAAATCAGGTCGCCATGTAGGTGTAGCAGGCAAGAATTCCAATCTTCCGAATAAAAATC
ACTCTAAAACCCGTAGCTTTCGACCTTTCTTGGTATGAATTCTTCGTGTTATATGTTGTTCATCTTCTGATTTTTATTGAAATATAGTTCTTTTATGTGT
ATAATAAACACTATATTAGGATGGGTTTTGCATGGCTATTCCTGTAGAGATCAGAAGTGTAGAGAGACCAAAAAATACGATCGTTGTCAAACGTGGCAAC
GGGCCTCTCCAGTACGCGGTCGTAGAGCGTGTAGGATGTAAGCGGGTAGGGGAAAGCAACATTCCGGTCAACGGATATACTATCGGTCACATCATCGATG
GGGCCTTTGTCCCGGTCAGCGAACCGGTTGCCCAAAGAACCATAGAACTCAAAGATTATGCAGATGTGGTTCTTGTTGATTCCGTATCAAGATCTCTTCT
TGATGAATTGTATGCTGTGTACTCTACCAAAGATGCCATGAAGATCTACTCGATGGCTCTGCTGAGAGTCTGCTATCCAGGAGTCCCCTGTTCCAGACTC
AGCCATTATTATGAGATGAGCTGGGTGAGTATGCTCTTTCCTTCCCTTCCATTGAGCAGGAATACCGTATCGGCATTCCTGCAGGATCTGGGCAAATCCT
ATTCACTGATTGTTTCTTTCATGAGGAACCGGGTCAACTCCCTTACCTCAGGGCATCATATTGCCATAGATGGAACGCTGAAAGAAGATAACAGCAGGGT
GAATTCCCTTTCTCATTACTCACGAAAGGCTCGTGTTGAAGGCACGATGGACATCACGGTGGTATTCGCCTACGACATAGATGTCAGAGAACCTATTTGT
TCCAAGGTCTTTGCCGGCAATGTACTCGACAGTGTCAGTTACCAGAGATTTCTCACTGAGAATGGATTGAAACAGGGTATTGTCATGGCAGACAAAGGAT
TTCCGAAAAAAGCTGCCCAGGAAGCTTTCGAGGCTTCCCCTGCTCTCCATTGGCTGAATCCCATAAAAAGAAGCGACAAACGCATTGCATCTCATGACAT
GTACGCTTTTACGGGAATGCTTGATGACAGGAACAGAGACATCCTATTCAAGAAGGCTGATCTTGGAGATTATTATCTGTATGCATTCTATGATCGTAAA
CGTGCGGCAAAAGAAGAAGCCGATTACTTCAAACATCACAAGGGGAAACCTTTTGATGCTGACCATCTGAGCAAGAGCGATGAGCGTTTCGGGACCGTTG
TCTTTGAATCTGATGTCGATACCGATCCCGGTACCATCTACAAGATGTATGATGAGAGATGGCTCATAGAAGAATGTTTCCGGTATTACAAGAACGTCAC
TGACTTCGATGACACCAGGGTCCATTCAGATTACGCTGTGTATGGGAGTGAGTTTGTAAACTTCATTTCTTCGGTCATGACTTCACGCATCATCAGGAAA
TTCGAAGATGCAGGACTCTTTGCAGAGATGACGTATAAGGACATCATGAGTCGCCTTGCCTCAGCTAAAAAGGTTGAAACTCTTGGGGATGGTACCTGGG
AGTTTGTGAAGACGACGAAGTCTACTGAAAAGATCCTTGAGAGGCTTGGTATTGTTGAAAAGCCGGAAGATCCTCCTAAACGCAAACGGGGAAGACCAAA
GAAAGCCGTTGACGTGAATGCCCCTAAACGGAAGCGTGGGCGGCCACGCAAGACCACTTCTTAGTAGCATATAGTGTTGAAAGTTGGGAAATCGTTACTT
AA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1533 bp510 aa2321764+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAIPVEIRSVERPKNTIVVKRGNGPLQYAVVERVGCKRVGESNIPVNGYTIGHIIDGAFVPVSEPVAQRTIELKDYADVVLVDSVSRSLLDELYAVYSTK
DAMKIYSMALLRVCYPGVPCSRLSHYYEMSWVSMLFPSLPLSRNTVSAFLQDLGKSYSLIVSFMRNRVNSLTSGHHIAIDGTLKEDNSRVNSLSHYSRKA
RVEGTMDITVVFAYDIDVREPICSKVFAGNVLDSVSYQRFLTENGLKQGIVMADKGFPKKAAQEAFEASPALHWLNPIKRSDKRIASHDMYAFTGMLDDR
NRDILFKKADLGDYYLYAFYDRKRAAKEEADYFKHHKGKPFDADHLSKSDERFGTVVFESDVDTDPGTIYKMYDERWLIEECFRYYKNVTDFDDTRVHSD
YAVYGSEFVNFISSVMTSRIIRKFEDAGLFAEMTYKDIMSRLASAKKVETLGDGTWEFVKTTKSTEKILERLGIVEKPEDPPKRKRGRPKKAVDVNAPKR
KRGRPRKTTS

 

Blast result :
Comments
ISShal1 is 55% aa similar to ISMbov5.
References
1] ISfinder annotation (2019)
2] Nazina,T.N. and Sokolova,D.S. (2018) Direct GenBank submission.