ISShal1
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
QUWK01000018 | ND | Sphaerochaeta halotolerans | Sphaerochaeta halotolerans 4-11 |
DNA section
IS Length : 1802 bp
Ends
IR Length : 28/34
IRL : TTAAATAACAATTTCCCAGAATCCAACACTATATAAACCTGCAAATCAGG
IRR : TTAAGTAACGATTTCCCAACTTTCAACACTATATGCTACTAAGAAGTGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGAGTAAGC | AAGAACATCTT | 0 |
DNA sequence
TTAAATAACAATTTCCCAGAATCCAACACTATATAAACCTGCAAATCAGGTCGCCATGTAGGTGTAGCAGGCAAGAATTCCAATCTTCCGAATAAAAATC
ACTCTAAAACCCGTAGCTTTCGACCTTTCTTGGTATGAATTCTTCGTGTTATATGTTGTTCATCTTCTGATTTTTATTGAAATATAGTTCTTTTATGTGT
ATAATAAACACTATATTAGGATGGGTTTTGCATGGCTATTCCTGTAGAGATCAGAAGTGTAGAGAGACCAAAAAATACGATCGTTGTCAAACGTGGCAAC
GGGCCTCTCCAGTACGCGGTCGTAGAGCGTGTAGGATGTAAGCGGGTAGGGGAAAGCAACATTCCGGTCAACGGATATACTATCGGTCACATCATCGATG
GGGCCTTTGTCCCGGTCAGCGAACCGGTTGCCCAAAGAACCATAGAACTCAAAGATTATGCAGATGTGGTTCTTGTTGATTCCGTATCAAGATCTCTTCT
TGATGAATTGTATGCTGTGTACTCTACCAAAGATGCCATGAAGATCTACTCGATGGCTCTGCTGAGAGTCTGCTATCCAGGAGTCCCCTGTTCCAGACTC
AGCCATTATTATGAGATGAGCTGGGTGAGTATGCTCTTTCCTTCCCTTCCATTGAGCAGGAATACCGTATCGGCATTCCTGCAGGATCTGGGCAAATCCT
ATTCACTGATTGTTTCTTTCATGAGGAACCGGGTCAACTCCCTTACCTCAGGGCATCATATTGCCATAGATGGAACGCTGAAAGAAGATAACAGCAGGGT
GAATTCCCTTTCTCATTACTCACGAAAGGCTCGTGTTGAAGGCACGATGGACATCACGGTGGTATTCGCCTACGACATAGATGTCAGAGAACCTATTTGT
TCCAAGGTCTTTGCCGGCAATGTACTCGACAGTGTCAGTTACCAGAGATTTCTCACTGAGAATGGATTGAAACAGGGTATTGTCATGGCAGACAAAGGAT
TTCCGAAAAAAGCTGCCCAGGAAGCTTTCGAGGCTTCCCCTGCTCTCCATTGGCTGAATCCCATAAAAAGAAGCGACAAACGCATTGCATCTCATGACAT
GTACGCTTTTACGGGAATGCTTGATGACAGGAACAGAGACATCCTATTCAAGAAGGCTGATCTTGGAGATTATTATCTGTATGCATTCTATGATCGTAAA
CGTGCGGCAAAAGAAGAAGCCGATTACTTCAAACATCACAAGGGGAAACCTTTTGATGCTGACCATCTGAGCAAGAGCGATGAGCGTTTCGGGACCGTTG
TCTTTGAATCTGATGTCGATACCGATCCCGGTACCATCTACAAGATGTATGATGAGAGATGGCTCATAGAAGAATGTTTCCGGTATTACAAGAACGTCAC
TGACTTCGATGACACCAGGGTCCATTCAGATTACGCTGTGTATGGGAGTGAGTTTGTAAACTTCATTTCTTCGGTCATGACTTCACGCATCATCAGGAAA
TTCGAAGATGCAGGACTCTTTGCAGAGATGACGTATAAGGACATCATGAGTCGCCTTGCCTCAGCTAAAAAGGTTGAAACTCTTGGGGATGGTACCTGGG
AGTTTGTGAAGACGACGAAGTCTACTGAAAAGATCCTTGAGAGGCTTGGTATTGTTGAAAAGCCGGAAGATCCTCCTAAACGCAAACGGGGAAGACCAAA
GAAAGCCGTTGACGTGAATGCCCCTAAACGGAAGCGTGGGCGGCCACGCAAGACCACTTCTTAGTAGCATATAGTGTTGAAAGTTGGGAAATCGTTACTT
AA
ACTCTAAAACCCGTAGCTTTCGACCTTTCTTGGTATGAATTCTTCGTGTTATATGTTGTTCATCTTCTGATTTTTATTGAAATATAGTTCTTTTATGTGT
ATAATAAACACTATATTAGGATGGGTTTTGCATGGCTATTCCTGTAGAGATCAGAAGTGTAGAGAGACCAAAAAATACGATCGTTGTCAAACGTGGCAAC
GGGCCTCTCCAGTACGCGGTCGTAGAGCGTGTAGGATGTAAGCGGGTAGGGGAAAGCAACATTCCGGTCAACGGATATACTATCGGTCACATCATCGATG
GGGCCTTTGTCCCGGTCAGCGAACCGGTTGCCCAAAGAACCATAGAACTCAAAGATTATGCAGATGTGGTTCTTGTTGATTCCGTATCAAGATCTCTTCT
TGATGAATTGTATGCTGTGTACTCTACCAAAGATGCCATGAAGATCTACTCGATGGCTCTGCTGAGAGTCTGCTATCCAGGAGTCCCCTGTTCCAGACTC
AGCCATTATTATGAGATGAGCTGGGTGAGTATGCTCTTTCCTTCCCTTCCATTGAGCAGGAATACCGTATCGGCATTCCTGCAGGATCTGGGCAAATCCT
ATTCACTGATTGTTTCTTTCATGAGGAACCGGGTCAACTCCCTTACCTCAGGGCATCATATTGCCATAGATGGAACGCTGAAAGAAGATAACAGCAGGGT
GAATTCCCTTTCTCATTACTCACGAAAGGCTCGTGTTGAAGGCACGATGGACATCACGGTGGTATTCGCCTACGACATAGATGTCAGAGAACCTATTTGT
TCCAAGGTCTTTGCCGGCAATGTACTCGACAGTGTCAGTTACCAGAGATTTCTCACTGAGAATGGATTGAAACAGGGTATTGTCATGGCAGACAAAGGAT
TTCCGAAAAAAGCTGCCCAGGAAGCTTTCGAGGCTTCCCCTGCTCTCCATTGGCTGAATCCCATAAAAAGAAGCGACAAACGCATTGCATCTCATGACAT
GTACGCTTTTACGGGAATGCTTGATGACAGGAACAGAGACATCCTATTCAAGAAGGCTGATCTTGGAGATTATTATCTGTATGCATTCTATGATCGTAAA
CGTGCGGCAAAAGAAGAAGCCGATTACTTCAAACATCACAAGGGGAAACCTTTTGATGCTGACCATCTGAGCAAGAGCGATGAGCGTTTCGGGACCGTTG
TCTTTGAATCTGATGTCGATACCGATCCCGGTACCATCTACAAGATGTATGATGAGAGATGGCTCATAGAAGAATGTTTCCGGTATTACAAGAACGTCAC
TGACTTCGATGACACCAGGGTCCATTCAGATTACGCTGTGTATGGGAGTGAGTTTGTAAACTTCATTTCTTCGGTCATGACTTCACGCATCATCAGGAAA
TTCGAAGATGCAGGACTCTTTGCAGAGATGACGTATAAGGACATCATGAGTCGCCTTGCCTCAGCTAAAAAGGTTGAAACTCTTGGGGATGGTACCTGGG
AGTTTGTGAAGACGACGAAGTCTACTGAAAAGATCCTTGAGAGGCTTGGTATTGTTGAAAAGCCGGAAGATCCTCCTAAACGCAAACGGGGAAGACCAAA
GAAAGCCGTTGACGTGAATGCCCCTAAACGGAAGCGTGGGCGGCCACGCAAGACCACTTCTTAGTAGCATATAGTGTTGAAAGTTGGGAAATCGTTACTT
AA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 232 | 1764 | + | No |
Chemistry : DDE
ORF sequence :
MAIPVEIRSVERPKNTIVVKRGNGPLQYAVVERVGCKRVGESNIPVNGYTIGHIIDGAFVPVSEPVAQRTIELKDYADVVLVDSVSRSLLDELYAVYSTK
DAMKIYSMALLRVCYPGVPCSRLSHYYEMSWVSMLFPSLPLSRNTVSAFLQDLGKSYSLIVSFMRNRVNSLTSGHHIAIDGTLKEDNSRVNSLSHYSRKA
RVEGTMDITVVFAYDIDVREPICSKVFAGNVLDSVSYQRFLTENGLKQGIVMADKGFPKKAAQEAFEASPALHWLNPIKRSDKRIASHDMYAFTGMLDDR
NRDILFKKADLGDYYLYAFYDRKRAAKEEADYFKHHKGKPFDADHLSKSDERFGTVVFESDVDTDPGTIYKMYDERWLIEECFRYYKNVTDFDDTRVHSD
YAVYGSEFVNFISSVMTSRIIRKFEDAGLFAEMTYKDIMSRLASAKKVETLGDGTWEFVKTTKSTEKILERLGIVEKPEDPPKRKRGRPKKAVDVNAPKR
KRGRPRKTTS
DAMKIYSMALLRVCYPGVPCSRLSHYYEMSWVSMLFPSLPLSRNTVSAFLQDLGKSYSLIVSFMRNRVNSLTSGHHIAIDGTLKEDNSRVNSLSHYSRKA
RVEGTMDITVVFAYDIDVREPICSKVFAGNVLDSVSYQRFLTENGLKQGIVMADKGFPKKAAQEAFEASPALHWLNPIKRSDKRIASHDMYAFTGMLDDR
NRDILFKKADLGDYYLYAFYDRKRAAKEEADYFKHHKGKPFDADHLSKSDERFGTVVFESDVDTDPGTIYKMYDERWLIEECFRYYKNVTDFDDTRVHSD
YAVYGSEFVNFISSVMTSRIIRKFEDAGLFAEMTYKDIMSRLASAKKVETLGDGTWEFVKTTKSTEKILERLGIVEKPEDPPKRKRGRPKKAVDVNAPKR
KRGRPRKTTS
Blast result :
Comments
ISShal1 is 55% aa similar to ISMbov5.
References
1] ISfinder annotation (2019)
2] Nazina,T.N. and Sokolova,D.S. (2018) Direct GenBank submission.
2] Nazina,T.N. and Sokolova,D.S. (2018) Direct GenBank submission.