ISMbov9

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP038861 ND Mycoplasma bovis
Mycoplasma bovis 16M
Mycoplasma bovis Ningxia-1
Mycoplasma bovis 08M
Mycoplasma bovis HB0801-P180
DNA section
IS Length : 1624 bp

Ends


IR Length : 30

IRL : TAAAAGTTTCCCGAAAAATTAACTATATAAAAATGCAAAAATAAGCGGTT
IRR : TAAAAGTTTCCCGAAAAATTAACTATATAAGATTTTTTCGATGAGTTCCA

Comments : Atypiqcal ends.

Insertion site


Left flankDirect repeatRight flankDR Length
TTAAATCAAGATCAATTTATAACTTA6

DNA sequence

TAAAAGTTTCCCGAAAAATTAACTATATAAAAATGCAAAAATAAGCGGTTTGCATTATAAATTGTTATTTTCATAAACTAAAACAAGAGTTTTAAAAAAC
AAAGGCTCTTGTTTTTTTATCTTACAATTGAAAAAATTAGCAAAAATATGTTTAAAAATTTGCTTGTTTTTTTAAAAAATAACTATATAATTAACTATAT
AAAGGAGTTAATTATATATGGCAGTACCAGCAGAAATTAGAGCAATAGAAAGACCTAAAAATACAGTTGTCAAAAAATCAGGTTCAATGTGAGCAGTTAT
TGAAAGAGTTGGATGTATTAGAAAAAATGGAAATAACCAACCAGTTGAAGGCAAAGTTATAGGACATATAATTGATGGGAAATTTGTGCCAAAAGAAAAA
CTGAAAATAACTGTTTCAATGAAAAATTTTGGAGACTACGAAATAGCAAAATCAGTTTCTAAGGATCTATTGACTGATTTAAGCAATGTGTATCCGCAGG
ATATGGCAAAACACATATATGCTGTTGCTTTACTTCGTTCTATAAATCCAAGAATGACAAATAACAAATTGGATGAAGTGTTTAATGAATCATTTATGTC
AGTTGAAAGTCCTGAACTTAAACTTGGAAAAAATAATGTCTCGTCATTAATAAAATGAATTGGAAAAGACTATTCTAAGGTACTTGAATTTATTCAAAAC
AGGGTTAGCAAAATTGATGAGAGCAACAAAATTGCAATAGATGGAATGTTAAAAAACAATAATAGCAAAGTAAATTCATTAAATGATTTTTCATACAAAT
CAAAATTAAAAAATAGCAAAAACATATCTATATTAATTGCTTTTAATGTGACGACTAGAGATGTAATTTGTTCACTTCCATACTCTGGAAATTGTGTGGA
TGTCACTAGTTTTCCTGACTTTTTGGAGAAAACAGGAATAAATAAGGGAATAATTATAGGTGACAAAGGCATAAATAGCAGTGCACTAATGTCCAATGTT
GGCTTTATACATCCGCTCAAAAGATCACTAAAACTTTTAGAAGAAATTGATGCATACAATATGAAAGATAAAATAAACAGCAAAGATGAACCAACCTGAT
GTAAAAAGATATTTCACAATGGACTTTATTACTATGCTTTCAGGAACTTAAAACGTGCATCAAAGGAAGAACAAGACTTTATGTCTAGTAAAAAATTTTC
AATTGAAAGATATGAAAAAATTAAGCACAAATTCGGAACAATTGTATATGTATCAGATCAAGATATCACATGTGAAGATGCATTAAACTTATACAAGCAA
AGATGAGAAATAGAACTTGTTAACGATTTTTATAAAAATACATTAGAGTTAGAAACTGTTAGACAGCATGATGATTACAGTGTTTATGGTGATGAGTTTT
TGAATATGCTTACCCTTATAATCGGAAACAGAATAAAGAATAAATTTGCTGACTCAAGAATTTTAGAGACTAAAACTTATCGCGATGTAATGAAAATATT
TAAGCAATATAAAAAAATACAAATGCCATATAAAAATGACATTTGGTATGAAACTGAGCTCCCCAAAAAAAGTATGGAACTCATCGAAAAAATCTTATAT
AGTTAATTTTTCGGGAAACTTTTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1389 bp462 aa2181606+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAVPAEIRAIERPKNTVVKKSGSMWAVIERVGCIRKNGNNQPVEGKVIGHIIDGKFVPKEKLKITVSMKNFGDYEIAKSVSKDLLTDLSNVYPQDMAKHI
YAVALLRSINPRMTNNKLDEVFNESFMSVESPELKLGKNNVSSLIKWIGKDYSKVLEFIQNRVSKIDESNKIAIDGMLKNNNSKVNSLNDFSYKSKLKNS
KNISILIAFNVTTRDVICSLPYSGNCVDVTSFPDFLEKTGINKGIIIGDKGINSSALMSNVGFIHPLKRSLKLLEEIDAYNMKDKINSKDEPTWCKKIFH
NGLYYYAFRNLKRASKEEQDFMSSKKFSIERYEKIKHKFGTIVYVSDQDITCEDALNLYKQRWEIELVNDFYKNTLELETVRQHDDYSVYGDEFLNMLTL
IIGNRIKNKFADSRILETKTYRDVMKIFKQYKKIQMPYKNDIWYETELPKKSMELIEKILYS

 

Blast result :
Comments
ISMbov9 is 53% aa similar to ISMbov5. The sequence is inserted in a copy of ISMbov1 (IS30 family).
References
1] Roshan Kumar, Joy Scaria (2019) Direct submission.
2] Zhang,L. (2019) Direct GenBank submission.