ISH10

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002607 ND Halobacterium sp.
Halobacterium salinarum R1 plasmid PHS3
Halobacterium sp. NRC-1
Halobacterium sp. NRC-1 pNRC200
Halobacterium sp. NRC-1 pNRC100
DNA section
IS Length : 1584 bp

Ends


IR Length : 16/18

IRL : GTACGTGTTTAGCCCCAGTGAATTTCGGCACTGTCTCGTAGCAGGCGACC
IRR : GTACGTGTTTACCCCGAGGTCTCGACAGCCGGCACAGCGTGAGCCCGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTCCGTTGTGATACTATAAGTATCCG8
TTAGACGTTCCGCCGGGGTCTTCGAGC8
AGTTGTTTTACCGATCTATAACGTAGAA8
AGTTGTTTTACCGATCTATAACGTAGAA8
AGTTGTTTTACCGATCTATAACGTAGAA8
TAACTGGTTAATACAGTTTACATGTGAC8
TACCGATCTAGACTTACGTT0

DNA sequence

GTACGTGTTTAGCCCCAGTGAATTTCGGCACTGTCTCGTAGCAGGCGACCAATCGGGGAGATATGCACCCTCAGCAAGGGCTAATTGAACTTCTTCAGGG
ATGGTCTCCGCTCGGAAACCATCCCGGTGACCCTGCTGAGGTAACGCTGAGGTGGTCATAGTGGATAGGGATGACCTCAGCAAAGACGAACTTCTCTCAC
GGTTTCTCCAAATGGAAGAGCGAATCGACGAGTTGGAGGAGAAACTCGAGCAGAAGGACGAACGAATCGAAGAACTCGAAACACGTCTTCGCAAATACGA
GAATCCACATACACCGCCTAGTAAGCGACGGTCGGGGACTGACGAGTCCCCGACCTCTCAAGACGACGAAGACGACGATGTCCGAACTGACGGCGGCACC
CCCGGACGAAAAGACGGTCACGACCCGGAGTGGCGTTCTACAACTGATCCCGACGAAGAAATCGAAGTCACCTGTGACTGTTGTCCTGAGTGTGGCGACC
ACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGATCCCTGATCCGCAGCCCCCAGAAATCACCCGGTACAACCGCCACTACTACCAGTG
CGATTCCTGTGGAACAGAGACAGTTGCGGCTCACCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAACGTCATCGCTCAATCAGCTCTGTCACGGTAC
GATCACCGCCTTCCCTACCGGAAAATCGCTGACCGCTTCGAGCAACTGCATGAACTCGAACTCTCGGGTGCATCCGCGTGGCACGCGACCGAGCGCGCTG
CGCGCGCCGGTCGCTGTGAGTACGAGCAGATCCGTCGAGAGATCCAAGATGCCGACGTGGTCCACATCGACGAAACAGGCATCAAACGTGACGGTGAGCA
GGCGTGGATTTGGACGTTCAAGACCGCTCAGCATACGTTATACGCGGTGAGAGAGAGTCGCGGGAGTGATGTTCCCGCGGAAGTCCTCGGCGAGGACTTC
GCGGGAACGGTCATCTGTGACGGGTGGACGGCGTACCCAGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTCTTCGAGAGGCTGAAGACGCCG
CCGAAAAGCAGGCAGAAGGTGAACCGATCTACCACGCTCTCAGACAGGTGTACGTCGCTCTCCAGGCCCGGCTGGAGAGCGACCCAAGTCCTCGTGAGAG
AGCAGACCTCCAGCGTGTGGCGCGAAGAGAGCTTGAATCGCTGATTGAACGGTCAGTACCCGACGGACCAGTGGCAACACTGCTCGGGAAGATCGAAGGA
GGTCTTGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCTCCGACAAACAATGCCGCAGAGAACGCGCTTCGTGAGCCAGTAGTTCTCCGGAAAA
TCATCGGAACGCTCCGCAATGACCGAGGAATGTTCGTTCACGAGACGGTCTTGTCCCTGCTGGCGACGTGGCGCCAGCAGGGACGCAATCCATACGAAGA
GCTTCGTCGAGTCGTCAGCAGCAATGAGATGCTCTCACGGGCTCACGCTGTGCCGGCTGTCGAGACCTCGGGGTAAACACGTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1425 bp475 aa1521576+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVIVDRDDLSKDELLSRFLQMEERIDELEEKLEQKDERIEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDDDVRTDGGTPGRKDGHDPEWRSTTDP
DEEIEVTCDCCPECGDHFDESVGVSPRLVEEIPDPQPPEITRYNRHYYQCDSCGTETVAAHPDCPDEGQFGVNVIAQSALSRYDHRLPYRKIADRFEQLH
ELELSGASAWHATERAARAGRCEYEQIRREIQDADVVHIDETGIKRDGEQAWIWTFKTAQHTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSS
NLQRCWAHILREAEDAAEKQAEGEPIYHALRQVYVALQARLESDPSPRERADLQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFVGEPAVSPT
NNAAENALREPVVLRKIIGTLRNDRGMFVHETVLSLLATWRQQGRNPYEELRRVVSSNEMLSRAHAVPAVETSG

 

Blast result :
Comments
ISH10 is 88% aa similar to ISH10B and 60% aa similar to ISArch15.
References
1] Ng,W.V., Kennedy,S.P., Mahairas,G.G., Berquist,B., Pan,M., Shukla,H.D., Lasky,S.R., Baliga,N., Thorsson,V., Sbrogna,J., Swartzell,S., Weir,D., Hall,J., Dahl,T.A., Welti,R., Goo,Y.A., Leithauser,B., Keller,K., Cruz,R., Danson,M.J., Hough,D.W., Maddocks,D.G., Jablonski,P.E., Krebs,M.P., Angevine,C.M., Dale,H., Isenbarger,T.A., Peck,R.F., Pohlschrod,M., Spudich,J.L., Jung,K.-H., Alam,M., Freitas,T., Hou,S., Daniels,C.J., Dennis,P.P., Omer,A.D., Ebhardt,H., Lowe,T.M., Liang,P., Riley,M., Hood,L. and DasSarma,S.(2000) Proc. Natl. Acad. Sci. USA 24 (97), 12176-12181.