ISPlge4
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014777 | ND | Pluralibacter gergoviae | Pluralibacter gergoviae Pluralibacter gergoviae FB2 |
DNA section
IS Length : 1342 bp
Ends
IR Length : 13
IRL : TAATGAGATGGTCACCCCCACCCTGTAGCGGTAAGCTGACAGGGTGTTTT
IRR : TCTATGGTCACCCCCATTTTTGCAAGACTGTTTTTTGACTAATGATGGCT
Comments : IRs are not at the termini of the sequence according to the rules of this group.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAACTACGGGGCT | TTCTGCTTTCTG | 0 |
DNA sequence
TAATGAGATGGTCACCCCCACCCTGTAGCGGTAAGCTGACAGGGTGTTTTGTTTTGGGAGAACCATCATGAATAACGTCTCTTTGATTGGTATTGATCTC
GGCAAAAATTCATTCCACGTCCATTGCCAGGACGCCACAGGCAAAGCTCTTAGCCGTAAAAAATTCACGCGAGCGAAATTATTCGAATTTCTTGCCAATT
GCCCTTCTGCAACTGTTGTTATGGAAGCCTGTGCAGGAGCTCACTATATAGCTCGTAAAATTTCTGACATGGGTCATAAACCAAAGCTGATTTCTCCTCA
ATTTGTCCGGCCATTCGTTAAAAGCAATAAGAATGATTTCGTTGATGCTGAAGCCATATGTGAAGCGGCATCAAGACCATCGATGCGATTTGTAGCACCA
AGAACTGAGTCCCAGCAGGAAATACTTGCTTTACATCGCATACGAGAATCTCTCGTCAGAGATAAAGTCAAAACAACCAACCAAATGCATGCTTTTTTAC
TCGAATTTGGGATCAGCATGCCAAAAGGTCTTGCAGTTATACGGAGACTATCCGTAGTCCTCACGGAAAATGAATTGCCTCCCTATTTGGCAAAATTGTT
AGTGAAGTTACAGAGCCATTATTTATATCTGGTTGAACAAATTCGCGATATAGAAAATGAACTAAAACTAGCAGCGAATCAAGATGATACAACCCAAAGG
CTTATGTCTATCCCTTCAGTTGGCCCGATTACAGCAAGCGTCCTGATGGCAAACCTCGGTAACGGTCAACAATATAAACAGAGCAGGGATTTTGCTGCGG
CAACTGGTCTTGTCCCCAGGCAATACAGCACTGGCGGCCGACCAACATTGTTAGGGATCAGTAAGCGGGGAAACAAAAATTTGCGAAGGTTATTAGTACA
ATGTGCAAGGGTGTACATCCTTCACCTCGAGCATCAGTCGGGTTATCTGGCAGAATGGGTGAGACACCAACTATCAAAAAAACACTCATGCGTTGTAGCT
TGCGGTCTGGCAAATAAACTCGCACGAATTGCCTGGGCGATTACGACAAAACAGAGCGTATATATGGCTTAGTTTTTTTATAGATTCACTAAAATTTGTT
GAAACAGCAGTTACCACCTGGTTTTGCGAAGACTGGAAATTGATGACATGAACGGCAAACCGGCCAGATGAAAAACCCTTTAAAGCAGATAGGCTCTATG
AAGCCGCGGGCTTTTTTATGGTTCATCTGGCGCAGACCTCATCGTGGCGCAGGTACATGTTACCTATAAACGACGCCGGATAGATTCAAGCAAGCCATCA
TTAGTCAAAAAACAGTCTTGCAAAAATGGGGGTGACCATAGA
GGCAAAAATTCATTCCACGTCCATTGCCAGGACGCCACAGGCAAAGCTCTTAGCCGTAAAAAATTCACGCGAGCGAAATTATTCGAATTTCTTGCCAATT
GCCCTTCTGCAACTGTTGTTATGGAAGCCTGTGCAGGAGCTCACTATATAGCTCGTAAAATTTCTGACATGGGTCATAAACCAAAGCTGATTTCTCCTCA
ATTTGTCCGGCCATTCGTTAAAAGCAATAAGAATGATTTCGTTGATGCTGAAGCCATATGTGAAGCGGCATCAAGACCATCGATGCGATTTGTAGCACCA
AGAACTGAGTCCCAGCAGGAAATACTTGCTTTACATCGCATACGAGAATCTCTCGTCAGAGATAAAGTCAAAACAACCAACCAAATGCATGCTTTTTTAC
TCGAATTTGGGATCAGCATGCCAAAAGGTCTTGCAGTTATACGGAGACTATCCGTAGTCCTCACGGAAAATGAATTGCCTCCCTATTTGGCAAAATTGTT
AGTGAAGTTACAGAGCCATTATTTATATCTGGTTGAACAAATTCGCGATATAGAAAATGAACTAAAACTAGCAGCGAATCAAGATGATACAACCCAAAGG
CTTATGTCTATCCCTTCAGTTGGCCCGATTACAGCAAGCGTCCTGATGGCAAACCTCGGTAACGGTCAACAATATAAACAGAGCAGGGATTTTGCTGCGG
CAACTGGTCTTGTCCCCAGGCAATACAGCACTGGCGGCCGACCAACATTGTTAGGGATCAGTAAGCGGGGAAACAAAAATTTGCGAAGGTTATTAGTACA
ATGTGCAAGGGTGTACATCCTTCACCTCGAGCATCAGTCGGGTTATCTGGCAGAATGGGTGAGACACCAACTATCAAAAAAACACTCATGCGTTGTAGCT
TGCGGTCTGGCAAATAAACTCGCACGAATTGCCTGGGCGATTACGACAAAACAGAGCGTATATATGGCTTAGTTTTTTTATAGATTCACTAAAATTTGTT
GAAACAGCAGTTACCACCTGGTTTTGCGAAGACTGGAAATTGATGACATGAACGGCAAACCGGCCAGATGAAAAACCCTTTAAAGCAGATAGGCTCTATG
AAGCCGCGGGCTTTTTTATGGTTCATCTGGCGCAGACCTCATCGTGGCGCAGGTACATGTTACCTATAAACGACGCCGGATAGATTCAAGCAAGCCATCA
TTAGTCAAAAAACAGTCTTGCAAAAATGGGGGTGACCATAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1005 bp | 334 aa | 68 | 1072 | + | No |
Chemistry : DEDD
ORF sequence :
MNNVSLIGIDLGKNSFHVHCQDATGKALSRKKFTRAKLFEFLANCPSATVVMEACAGAHYIARKISDMGHKPKLISPQFVRPFVKSNKNDFVDAEAICEA
ASRPSMRFVAPRTESQQEILALHRIRESLVRDKVKTTNQMHAFLLEFGISMPKGLAVIRRLSVVLTENELPPYLAKLLVKLQSHYLYLVEQIRDIENELK
LAANQDDTTQRLMSIPSVGPITASVLMANLGNGQQYKQSRDFAAATGLVPRQYSTGGRPTLLGISKRGNKNLRRLLVQCARVYILHLEHQSGYLAEWVRH
QLSKKHSCVVACGLANKLARIAWAITTKQSVYMA
ASRPSMRFVAPRTESQQEILALHRIRESLVRDKVKTTNQMHAFLLEFGISMPKGLAVIRRLSVVLTENELPPYLAKLLVKLQSHYLYLVEQIRDIENELK
LAANQDDTTQRLMSIPSVGPITASVLMANLGNGQQYKQSRDFAAATGLVPRQYSTGGRPTLLGISKRGNKNLRRLLVQCARVYILHLEHQSGYLAEWVRH
QLSKKHSCVVACGLANKLARIAWAITTKQSVYMA
Blast result :
Comments
ISPlge4 is 87% aa similar to ISplu13.
References
1] Zhe Zhan (2018) Direct submission.
2] Tan,J.-Y. and Chan,K.-G. (2016) Direct GenBank submission.
2] Tan,J.-Y. and Chan,K.-G. (2016) Direct GenBank submission.