ISPlge2

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014777 ND Pluralibacter gergoviae
Pluralibacter gergoviae
Pluralibacter gergoviae strain FB2
DNA section
IS Length : 2409 bp

Ends


IR Length : 34/46

IRL : TATTAGGCGACAATTACCCCGTCCGCTTCGCGACAATTACTCTGGCCTGT
IRR : TATTAGACGTCAACTACCTTGGCCGGTACGCGTCAACTACTCTGGCCGCC

Insertion site


Left flankDirect repeatRight flankDR Length
CTTCAGCACGAAACCTGCCCAAGCAGCACCAAT7

DNA sequence

TATTAGGCGACAATTACCCCGTCCGCTTCGCGACAATTACTCTGGCCTGTTTGTAATCTGAGCGTCCTGTTTCTTCTTTCCAGGGAGAGGTTGTGACGCT
GAATACCAGACAGGTCAGTTTTTACATGGCTCAACGTAATAAAGGTCTTACGCAGGAAGCCGCTGCGGCCACCACCGGCATCTCTGTTCGCTCCGGACGA
CGTATTGAAAAAGGGCAGTGGCAATCATCAGGTGAGCGACACTGGCGGACACGTCAGGATCCTCTGGAAGCGGTCTGGCTCAGTGATGTGCTTCCTTTAC
TCGCTTCCCGTCCGCAGATCTCGCCGACAACGGTTCTCGAATATCTGCAGGATAAATATCCGGGCCAGTATCCCGATAAGGTGCGCCGGACGCTGCAGCG
CCGTATCCGTACCTGGAAAGCCTGCCACGGTGAGGAACGGGAGATCATGTTCCGCCAGGAGCATCAACCGGGAATGCGGGCGCTGTCAGATTTTACCCAG
CTGAAAGGCACGGTTATCACCATTAACGGCTGCCCGCTGGAACACAAGCTCTTCCACTTCCGCCTTGAATGGAGTCGCTGGAGCTGGATGCGGGTTGTCA
CCGGCGGCGAGAGCTTCACCGCTCTGGCCGAAGGACTACAGGAGGCGCTGGGTCAGCTGGGTGGTGTACCAGCGGAGCACCGTACAGATAGTCTGGCCGC
AGCATGGAAAAACCTGAGCGAGGAAGACCACCGGGATCAGACAGCGCGCTATGCCGGGTTGTGTGAACACTACGGCATGACCCCTTCCCGCAATAACAGC
GGACGGGGCCATGAGAATGGTTCAGTGGAGTCGGCTCACGGACACCTCAAGGAGCGTATACGGCAGGCCCTGCTGCTGCGCGGAAATAACGACTTCGGTT
CCCTGAATGAATATCGTCAGTTCGTTACACAGCAGGTGCTGCGTCATAACCAGCGCAATCAGGATCTGGTCCGTCAGGAACTGGCACTTCTGAAGCCCCT
TCCTCAGCGACGGTGTGCTGACTACGAAGAGTTGTCTGTCCGGGTCAGCAGCAGTAGTACCATCAACGTCCGGCACGTTGTGTACAGCGTGCCATCCAGA
CTTATCGGACAGATGCTGAAGGTTCGTCTGTGGGATGACAGACTGAGTTGTTACGTTGGAAGCGATGAAGTAATGAGCTGTCAGCGGATCCGGGCACCGA
AAGGTAAACGGCGGGCCCGCAGTATCAACTTCCGACACGTGATCGGTAGTCTTGTCATGAAACCCGGGGCGTTCTATCACGCCACACTGCGTAACGACAT
CCTGCCGGATGATGAATGGCGGCAGCTGTGGCAGCGGATGTGTTCACGTCTTGCCCCTCAGCTGGCCAGTCGCCTGATGGTTAATGCCCTGAAGCTGGCG
GCAGAGCGGGAAGACATCTCAGCGGTCGCGAAGGGGCTGAACCACCTGCTGCTGGAGCCGGGAGAGCCGGATCTGCAGAAGCTGCTCAACTGGCTGGGCG
TGAAGGATAAACGCCCGCTGCCGGACGGGAAACTGGTTCAGCACAGCCTGCAGGGTTATGACAACCTGATGCGTAAAGGAGGCCTGCAGTGACCGATATC
CATACGCTTGAAAGGTTGCTCAGAAGGTTACGTCTGACGCGCATAGCCACCGAGTGGCACAGCCAGGAGAAACGCGCGCTGGCCGAAGGGTGGACCCCTT
CGCGTTATCTGCTGTCACTCTGCAGTGAAGAGGCGACGCACAGGGAAAGCGAACGGCTGCGGCGGTATATAAAGGATGCGCGGTTGCCAGTGGGGAAAAC
GCTGGCCGAATATGACTTCGGCCAGGTCCCGGAGCTGAATGCCGCACAGGTGCGTCAGCTGTGTGAAACGACGGACTGGGTGGACAGCGGGGAGAATGTC
CTGCTGTTCGGTGCCAGCGGTCTGGGCAAAAGCCACCTTGCCGCAGCGATCGCGGACGGCGTAGTGAGCCAGGGCTATCGGGTCCGGTTCTACAGCGCCG
GCGAGTTGTTGCAGGAGCTGCGTAAAGCCCGGTCGTTGCTGAGGCTGAACGAGATGCTTCTGAAGCTGGATCGCTACCGGGTGATAGTGATAGACGACCT
GGGCTATGTCAAACGGGATAACGCGGAAACGGGCGTGCTGTTCGAACTTATCGCGCACCGGTACGAAAGAGGAAGTCTGATCATCACAAGTAACCATCCG
TTCAGCACATGGGGCAGTATCTTCGTGGACGAAACAATGGCGGTGGCAGCGGCGGACAGGCTGATCCACCACGGGTACATCTTCGAAGTTACAGGAGAAA
GTTACAGAAAGAAAACATCAAAAGCAGTCACCCAGCAGTCAGCTAAGAAATAACTCAAAGGCGGCCAGAGTAGTTGACGCGTACCGGCCAAGGTAGTTGA
CGTCTAATA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1500 bp499 aa931592+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTLNTRQVSFYMAQRNKGLTQEAAAATTGISVRSGRRIEKGQWQSSGERHWRTRQDPLEAVWLSDVLPLLASRPQISPTTVLEYLQDKYPGQYPDKVRRT
LQRRIRTWKACHGEEREIMFRQEHQPGMRALSDFTQLKGTVITINGCPLEHKLFHFRLEWSRWSWMRVVTGGESFTALAEGLQEALGQLGGVPAEHRTDS
LAAAWKNLSEEDHRDQTARYAGLCEHYGMTPSRNNSGRGHENGSVESAHGHLKERIRQALLLRGNNDFGSLNEYRQFVTQQVLRHNQRNQDLVRQELALL
KPLPQRRCADYEELSVRVSSSSTINVRHVVYSVPSRLIGQMLKVRLWDDRLSCYVGSDEVMSCQRIRAPKGKRRARSINFRHVIGSLVMKPGAFYHATLR
NDILPDDEWRQLWQRMCSRLAPQLASRLMVNALKLAAEREDISAVAKGLNHLLLEPGEPDLQKLLNWLGVKDKRPLPDGKLVQHSLQGYDNLMRKGGLQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
765 bp254 aa15892353+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MTDIHTLERLLRRLRLTRIATEWHSQEKRALAEGWTPSRYLLSLCSEEATHRESERLRRYIKDARLPVGKTLAEYDFGQVPELNAAQVRQLCETTDWVDS
GENVLLFGASGLGKSHLAAAIADGVVSQGYRVRFYSAGELLQELRKARSLLRLNEMLLKLDRYRVIVIDDLGYVKRDNAETGVLFELIAHRYERGSLIIT
SNHPFSTWGSIFVDETMAVAAADRLIHHGYIFEVTGESYRKKTSKAVTQQSAKK

 

Blast result :
Comments
ISPlge2 is 81% aa (transposase) similar to ISEc10.
References
1] Zhe Zhan (2018) Direct submission.
2] Tan,J.-Y. and Chan,K.-G. (2016) Direct GenBank submission.