ISfinder Mirror Site

ISHcl1

Family IS5
Group ISH1

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
FNPB01000020	ND	Halobellus clavatus	Halobellus clavatus CGMCC 1.10118

DNA section

IS Length : 937 bp

Ends

IR Length : 17/21

IRL : GGCTCTGGTGAATCGCTGGACAGCGTCGTCTTCGACCGTCAGAACTAGTG
IRR : GGCCGTGGTGAATCGCCAGACGTAGCGTGATTTCATGGTTTCATCGCTTG

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GGGCAGAGTTCG	AATACACC	TGCAGTGAGTGC	8

DNA sequence

GGCTCTGGTGAATCGCTGGACAGCGTCGTCTTCGACCGTCAGAACTAGTGGAATGAAGCGGGAAACCGCCGATGCCTATGTCGAAGATTTCCCGCTTCAC
GAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTCGGTGGCCGAGGCGAAGTCGCCGCCCCCGAGGGGGGTGGCGGCTTCGCCGATTACGCTGTTGTGTCG
CTCCATTGTCTTCGGGTTTACTTGGAGAAGTCCTACCGAGAGGCGTTGGATCTGCTGAGCGAAATGCCACATATTCTCGGGGAGATCGGCCTCGAACCGG
CCGATCTCCCGCATCACTCCACGCTAGTAAAGTGGTTTGACAGGATCAAGACAGCACTCTGGCGAGTGCTGCTGCGCCTCTCGGCGCAGCTGCACGACCC
GAGCGGTCACGCCGCTATCGACGCGACATTCTTTGACCGCGAAAACGCGAGCAAGCACTACTGCCGTCGGACGAATTACCGCGTCCAGACGCTCAAAACA
ACTGCTCTCGTGGACACAGAAAGCCACGCGATTCTGGACGTTCACTGTACGACCGAGAAACGTCACGACACACAACTCGGCTGGCAGGTCGCCCTCCGCA
ACGCGGGCGACCTCGCCAGCCTCGCTGCGGACAAAGGCTACGATTGGATGGATTTACGCGAGAAACTCCGCGAAGAGGGCGTGAGACCGCTGATCAAACA
TCGTGAGTACCGGTCCATCGATCACGCGCACAACGCGCGGATCGATGGGCCTCGATACCGCCAGAGAGCGATGTGTGAAACCGTCTTCTCGGCGATCAAG
CGCACGCTCGGCGACGCCGTGCGTGCGCGAACTTGGTACGGTGAGTTTCGTGAACTCGTCCTGATGTGTGCGGTTCACAACATCAAGCAAGCGATGAAAC
CATGAAATCACGCTACGTCTGGCGATTCACCACGGCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
828 bp	275 aa	78	905	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKISRFTKKAVQLAKNAVGGRGEVAAPEGGGGFADYAVVSLHCLRVYLEKSYREALDLLSEMPHILGEIGLEPADLPHHSTLVKWFDRIKTALWRVLLR
LSAQLHDPSGHAAIDATFFDRENASKHYCRRTNYRVQTLKTTALVDTESHAILDVHCTTEKRHDTQLGWQVALRNAGDLASLAADKGYDWMDLREKLREE
GVRPLIKHREYRSIDHAHNARIDGPRYRQRAMCETVFSAIKRTLGDAVRARTWYGEFRELVLMCAVHNIKQAMKP

Blast result :

Comments

ISHcl1 is 97% aa similar to ISHwa1.

References

1] Friedhelm Pfeiffer (2019) Direct submission.
2] Varghese,N. and Submissions,S. DOE - JOINT GENOME INSTITUTE(2016) Direct GenBank submission.