ISFn1

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
X68876 [P] ND Fusobacterium necrophorum
Fusobacterium necrophorum Tal20
Fusobacterium necrophorum biotype AB FnS1
Fusobacterium necrophorum A47
Fusobacterium necrophorum Bol4
Fusobacterium necrophorum Hall3
Fusobacterium necrophorum HW3
DNA section
IS Length : 712 bp

Ends


oriIS : AAACAAATCTTTGATTATCAGTTTCAGAATACTCATAAAAAACGAAAAAGAAAAAAGAAAATTGGGAAATATTCCAAAAACTATTTTACAGAATCTGATA II struct. : No
terIS : TTTGGTTTTTATGGCGTAGAAAATCAGATACTTTAAAAATACATATGGCATTCTTACAAAAAAAGAAAAAGAAGAATCCTTTTTCCTTTTATGTCGACTC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site

DNA sequence

AAACAAATCTTTGATTATCAGTTTCAGAATACTCATAAAAAACGAAAAAGAAAAAAGAAAATTGGGAAATATTCCAAAAACTATTTTACAGAATCTGATA
TTGTACACTATGGACTCATAACTGTAATTCATACCTTTGGCAGAGACTTAAAATGGAATCCTCATGTGCATGCACTCATTTCTTTGGGAGGATTTAATAA
ACGTTTTGTATGGAAAAAATTAGACTATTTTCATGTAGATGTCATTGCGAATCAATGGAAATTTATCGTCTTACAACTCATTCAATCCGGAAATTATCAA
GATCCCATCTGGAAAGAAAAAGCAAAACAAGTAGCCAATAAACTCTACAAAGAAAATGCACGACTTTTTTTCTCGGTGGGAAGACAAGAAGTCAATTCTG
CGGAAGGACTCTTGAAATATCTAGGTAGATATCTTGCGCGTGCTCCGATCGCTGATTACAAAATCGTGAATGTTACAGAAAAAGAAGTAACTTTCTTTTT
TCATGATTTGGCAAATCACAAAAAAAAAACATATATCACCATGTCTCGAGAAAAATTTATTCAACAAGTATTGATTCATCTTCCCCCAAAACATTTTAAA
ATGATTTCTCGTTTTGGTTTTTATGGCGTAGAAAATCAGATACTTTAAAAATACATATGGCATTCTTACAAAAAAAGAAAAAGAAGAATCCTTTTTCCTT
TTATGTCGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
648 bp215 aa1648+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

KQIFDYQFQNTHKKRKRKKKIGKYSKNYFTESDIVHYGLITVIHTFGRDLKWNPHVHALISLGGFNKRFVWKKLDYFHVDVIANQWKFIVLQLIQSGNYQ
DPIWKEKAKQVANKLYKENARLFFSVGRQEVNSAEGLLKYLGRYLARAPIADYKIVNVTEKEVTFFFHDLANHKKKTYITMSREKFIQQVLIHLPPKHFK
MISRFGFYGVENQIL

 

Blast result :
Comments
ISFn1 is partial: the 5' (at least 450 bp) and the 3' (at least 320 bp) ends are missing.
References
1] Hogson, A.L.M., Nicholson, L.A., Doran, T.J., and Corner, L.A. (1993) FEMS Microbiol. Lett. 107, 205-210.