ISFn1
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X68876 [P] | ND | Fusobacterium necrophorum | Fusobacterium necrophorum Tal20 Fusobacterium necrophorum biotype AB FnS1 Fusobacterium necrophorum A47 Fusobacterium necrophorum Bol4 Fusobacterium necrophorum Hall3 Fusobacterium necrophorum HW3 |
DNA section
IS Length : 712 bp
Ends
oriIS : AAACAAATCTTTGATTATCAGTTTCAGAATACTCATAAAAAACGAAAAAGAAAAAAGAAAATTGGGAAATATTCCAAAAACTATTTTACAGAATCTGATA II struct. : No
terIS : TTTGGTTTTTATGGCGTAGAAAATCAGATACTTTAAAAATACATATGGCATTCTTACAAAAAAAGAAAAAGAAGAATCCTTTTTCCTTTTATGTCGACTC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|
DNA sequence
AAACAAATCTTTGATTATCAGTTTCAGAATACTCATAAAAAACGAAAAAGAAAAAAGAAAATTGGGAAATATTCCAAAAACTATTTTACAGAATCTGATA
TTGTACACTATGGACTCATAACTGTAATTCATACCTTTGGCAGAGACTTAAAATGGAATCCTCATGTGCATGCACTCATTTCTTTGGGAGGATTTAATAA
ACGTTTTGTATGGAAAAAATTAGACTATTTTCATGTAGATGTCATTGCGAATCAATGGAAATTTATCGTCTTACAACTCATTCAATCCGGAAATTATCAA
GATCCCATCTGGAAAGAAAAAGCAAAACAAGTAGCCAATAAACTCTACAAAGAAAATGCACGACTTTTTTTCTCGGTGGGAAGACAAGAAGTCAATTCTG
CGGAAGGACTCTTGAAATATCTAGGTAGATATCTTGCGCGTGCTCCGATCGCTGATTACAAAATCGTGAATGTTACAGAAAAAGAAGTAACTTTCTTTTT
TCATGATTTGGCAAATCACAAAAAAAAAACATATATCACCATGTCTCGAGAAAAATTTATTCAACAAGTATTGATTCATCTTCCCCCAAAACATTTTAAA
ATGATTTCTCGTTTTGGTTTTTATGGCGTAGAAAATCAGATACTTTAAAAATACATATGGCATTCTTACAAAAAAAGAAAAAGAAGAATCCTTTTTCCTT
TTATGTCGACTC
TTGTACACTATGGACTCATAACTGTAATTCATACCTTTGGCAGAGACTTAAAATGGAATCCTCATGTGCATGCACTCATTTCTTTGGGAGGATTTAATAA
ACGTTTTGTATGGAAAAAATTAGACTATTTTCATGTAGATGTCATTGCGAATCAATGGAAATTTATCGTCTTACAACTCATTCAATCCGGAAATTATCAA
GATCCCATCTGGAAAGAAAAAGCAAAACAAGTAGCCAATAAACTCTACAAAGAAAATGCACGACTTTTTTTCTCGGTGGGAAGACAAGAAGTCAATTCTG
CGGAAGGACTCTTGAAATATCTAGGTAGATATCTTGCGCGTGCTCCGATCGCTGATTACAAAATCGTGAATGTTACAGAAAAAGAAGTAACTTTCTTTTT
TCATGATTTGGCAAATCACAAAAAAAAAACATATATCACCATGTCTCGAGAAAAATTTATTCAACAAGTATTGATTCATCTTCCCCCAAAACATTTTAAA
ATGATTTCTCGTTTTGGTTTTTATGGCGTAGAAAATCAGATACTTTAAAAATACATATGGCATTCTTACAAAAAAAGAAAAAGAAGAATCCTTTTTCCTT
TTATGTCGACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
648 bp | 215 aa | 1 | 648 | + | No |
Chemistry : Y2
ORF sequence :
KQIFDYQFQNTHKKRKRKKKIGKYSKNYFTESDIVHYGLITVIHTFGRDLKWNPHVHALISLGGFNKRFVWKKLDYFHVDVIANQWKFIVLQLIQSGNYQ
DPIWKEKAKQVANKLYKENARLFFSVGRQEVNSAEGLLKYLGRYLARAPIADYKIVNVTEKEVTFFFHDLANHKKKTYITMSREKFIQQVLIHLPPKHFK
MISRFGFYGVENQIL
DPIWKEKAKQVANKLYKENARLFFSVGRQEVNSAEGLLKYLGRYLARAPIADYKIVNVTEKEVTFFFHDLANHKKKTYITMSREKFIQQVLIHLPPKHFK
MISRFGFYGVENQIL
Blast result :
Comments
ISFn1 is partial: the 5' (at least 450 bp) and the 3' (at least 320 bp) ends are missing.
References
1] Hogson, A.L.M., Nicholson, L.A., Doran, T.J., and Corner, L.A. (1993) FEMS Microbiol. Lett. 107, 205-210.