ISBdi14
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 122 |
DNA section
IS Length : 1044 bp
Ends
IR Length : 21/24
IRL : GAGCATGTTGTTTTTTACCGGAATCGGGATTCCCAGAGGGGGGAATTTCT
IRR : GAGCATGATGTTTTTATACGGAAACATAGCCTGAATTTTTGAGGTAGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCTCCTGCC | TA | GTCGGCAACT | 2 |
DNA sequence
GAGCATGTTGTTTTTTACCGGAATCGGGATTCCCAGAGGGGGGAATTTCTGATTCAAACTCCATGCTGGAGAACGGGGGCCAGCATGGATGACGCGACCC
TATTCGGAAGACCTTCGCGAACTCGCTCTGGCGAGGGCTGACGCAGGCGAGACGGTTCGTTCGATTGCAGAAGCGCTTCAGATCAGTCCTTCCTGTGTGA
CGAAGTGGAAGAATCTTCGGCGAGAGACCGGAGGCGTTTCTCCCGGCAAGATCGGCGGTCACAAGAAGCCGGTTCTGTCCGGCACCAACGCCGACTGGCT
GCGCAAACGCATTCGCTCCGGACCGTTCACTTTGCGGAAGCTGACGCAAGAACTGGCTGCGCGCGGAATCAAAACAGACGTGCGGGCGGTATGGACGTTC
GTTCACGCCGAGGGGCTGAGCTTCAAAAAAAACGCTCCGGCCGGCCGAACAAGATCGCCCCGATATCGCGCGTAAACGGACGCGCTGGAAGGCCCATCAG
GGCAGGATCGAGGCCTCACGCCTGGTCTTTATCGACGAGACCTGGATCAAAACCAACATGGCCCCACTGCGCGGCTGGGGACCGAGTGGGCAGCGTCTTG
AAGCATCTGCGCCTTTTGGCCACTGGAAGACCATGACCTTCATCGCCGCGCTGCGCCACGACCGGATCAGCGCGCCCTGGGTCATCGATGGCCCCATCAA
CGGTGAGCTCTTCACGCTCTACGTCGAGAAAGTTTTGGCGCCCACCTTGGCAAAAGGCGAGGTCGTCATTCTCGATAACCTGGGCAGTCATAAGGGCAAG
TCTGCCCGCAACGCCATCCGCGCCAGAGGGGCGCATCTCCTCTTCCTGCCGCCCTACAGCCCCGACCTCAATCCGATCGAGCAGGTCTTCGCCAAGCTCA
AACACCTGATGCGAGCCGCGCAGACACGTGATGTCGAAGCGACTTGGCGCAAGGTCGGCGAACTCCTCGATATCTTCTCCAAAGACGAATGCGCCAACTA
CCTCAAAAATTCAGGCTATGTTTCCGTATAAAAACATCATGCTC
TATTCGGAAGACCTTCGCGAACTCGCTCTGGCGAGGGCTGACGCAGGCGAGACGGTTCGTTCGATTGCAGAAGCGCTTCAGATCAGTCCTTCCTGTGTGA
CGAAGTGGAAGAATCTTCGGCGAGAGACCGGAGGCGTTTCTCCCGGCAAGATCGGCGGTCACAAGAAGCCGGTTCTGTCCGGCACCAACGCCGACTGGCT
GCGCAAACGCATTCGCTCCGGACCGTTCACTTTGCGGAAGCTGACGCAAGAACTGGCTGCGCGCGGAATCAAAACAGACGTGCGGGCGGTATGGACGTTC
GTTCACGCCGAGGGGCTGAGCTTCAAAAAAAACGCTCCGGCCGGCCGAACAAGATCGCCCCGATATCGCGCGTAAACGGACGCGCTGGAAGGCCCATCAG
GGCAGGATCGAGGCCTCACGCCTGGTCTTTATCGACGAGACCTGGATCAAAACCAACATGGCCCCACTGCGCGGCTGGGGACCGAGTGGGCAGCGTCTTG
AAGCATCTGCGCCTTTTGGCCACTGGAAGACCATGACCTTCATCGCCGCGCTGCGCCACGACCGGATCAGCGCGCCCTGGGTCATCGATGGCCCCATCAA
CGGTGAGCTCTTCACGCTCTACGTCGAGAAAGTTTTGGCGCCCACCTTGGCAAAAGGCGAGGTCGTCATTCTCGATAACCTGGGCAGTCATAAGGGCAAG
TCTGCCCGCAACGCCATCCGCGCCAGAGGGGCGCATCTCCTCTTCCTGCCGCCCTACAGCCCCGACCTCAATCCGATCGAGCAGGTCTTCGCCAAGCTCA
AACACCTGATGCGAGCCGCGCAGACACGTGATGTCGAAGCGACTTGGCGCAAGGTCGGCGAACTCCTCGATATCTTCTCCAAAGACGAATGCGCCAACTA
CCTCAAAAATTCAGGCTATGTTTCCGTATAAAAACATCATGCTC
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
387 bp | 128 aa | 89 | 475 | + | No |
Description : First part of the transposase
ORF sequence :
MTRPYSEDLRELALARADAGETVRSIAEALQISPSCVTKWKNLRRETGGVSPGKIGGHKKPVLSGTNADWLRKRIRSGPFTLRKLTQELAARGIKTDVRA
VWTFVHAEGLSFKKNAPAGRTRSPRYRA
VWTFVHAEGLSFKKNAPAGRTRSPRYRA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
612 bp | 203 aa | 420 | 1031 | + | No |
Description : Second part of the transposase
ORF sequence :
ASKKTLRPAEQDRPDIARKRTRWKAHQGRIEASRLVFIDETWIKTNMAPLRGWGPSGQRLEASAPFGHWKTMTFIAALRHDRISAPWVIDGPINGELFTL
YVEKVLAPTLAKGEVVILDNLGSHKGKSARNAIRARGAHLLFLPPYSPDLNPIEQVFAKLKHLMRAAQTRDVEATWRKVGELLDIFSKDECANYLKNSGY
VSV
YVEKVLAPTLAKGEVVILDNLGSHKGKSARNAIRARGAHLLFLPPYSPDLNPIEQVFAKLKHLMRAAQTRDVEATWRKVGELLDIFSKDECANYLKNSGY
VSV
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
943 bp | 313 aa | 89 | 1031 | + | Yes |
Chemistry : DDE
ORF sequence :
MTRPYSEDLRELALARADAGETVRSIAEALQISPSCVTKWKNLRRETGGVSPGKIGGHKKPVLSGTNADWLRKRIRSGPFTLRKLTQELAARGIKTDVRA
VWTFVHAEGLSFKKTLRPAEQDRPDIARKRTRWKAHQGRIEASRLVFIDETWIKTNMAPLRGWGPSGQRLEASAPFGHWKTMTFIAALRHDRISAPWVID
GPINGELFTLYVEKVLAPTLAKGEVVILDNLGSHKGKSARNAIRARGAHLLFLPPYSPDLNPIEQVFAKLKHLMRAAQTRDVEATWRKVGELLDIFSKDE
CANYLKNSGYVSV
VWTFVHAEGLSFKKTLRPAEQDRPDIARKRTRWKAHQGRIEASRLVFIDETWIKTNMAPLRGWGPSGQRLEASAPFGHWKTMTFIAALRHDRISAPWVID
GPINGELFTLYVEKVLAPTLAKGEVVILDNLGSHKGKSARNAIRARGAHLLFLPPYSPDLNPIEQVFAKLKHLMRAAQTRDVEATWRKVGELLDIFSKDE
CANYLKNSGYVSV
Blast result :
Comments
ISBdi14 is 72% aa similar to ISGdi6.
The third ORf is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORf is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Gesiele Carvalho (2018) Direct submission.