ISPssp5

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Psychrobacter sp.
Psychrobacter sp. DAB_AL32B
Psychrobacter sp. DAB_AL32B pP32BP2
DNA section
IS Length : 837 bp

Ends


IR Length : 16/17

IRL : GGGTGTGTCATCAATTAGCACAGTTATTTTAGAATAAGCTATACTAATTC
IRR : GGGCGTGTCATCAATTAAGCCAGACAACACAAGAAACCAGATGAATCGCA

Insertion site


Left flankDirect repeatRight flankDR Length
tggtgtataaatctttgactccagcTAagtaaaaccagccctcatcagtcca2

DNA sequence

GGGTGTGTCATCAATTAGCACAGTTATTTTAGAATAAGCTATACTAATTCTATGTTTATCAAACTGAGCTCAATCCTCATGACAAGACGACATGCTCTAC
GTGATGACCAATGGGAGAAGATTAAAGACATCCTACCAGGTCAACCAAGTGACGTTGGTGTTACCGCCAAAGATAACCGATTATTCGTAGAAGCCGTTCT
GTACCGCTATAAGACCGGCATACCTTGGCGCGACCTACCTGAACGCTTTGGCGACTTTAGAGTGGTGCATACCCGTTTTAGCCGTTGGTCAAAGAAAGGG
GTATGGGAGCAAGTATTTAACTTGCTATCTGAGGCGTCTGACAATGAATACGCCATGCTCGACGCCACCATTGTCAAAGCCCACCAGCATAGCGCTGGAA
AAAAAGGGATCAAGCCATTGGGCGCAGTAAAGGTGGGCTGACGACTAAAATACATACTCGAACAGATGCATTAGGCAATCCTACTGGTTTTTATCTAACA
GGTGGCGCGGCTCATGACCTATGTGGCTCAGATGAACTGCTCGATGTCAGTATTAGCCAAACTTGGCTTGCCGATAGAGCTTACGATGCTGATGCCCGTG
TTATTGAACGCATTAAAGCTGTACAAGGCAATGCAGTCATACCGTTCAAATGTCATCGACTGCAGCCAAGAGATTTCGATGAAGATCTTTATCAAGCACG
GCATCTGATCGAGAACTTCTTCGCCAAGATTAAGCAGTACCGTGCGATTGCCACTCGATATGACAGGTTAGCGAGCCATTTCCTCAGTGCGATTCATCTG
GTTTCTTGTGTTGTCTGGCTTAATTGATGACACGCCC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
363 bp120 aa79441+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MTRRHALRDDQWEKIKDILPGQPSDVGVTAKDNRLFVEAVLYRYKTGIPWRDLPERFGDFRVVHTRFSRWSKKGVWEQVFNLLSEASDNEYAMLDATIVK
AHQHSAGKKGIKPLGAVKVG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
435 bp144 aa393827+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

RWKKRDQAIGRSKGGLTTKIHTRTDALGNPTGFYLTGGAAHDLCGSDELLDVSISQTWLADRAYDADARVIERIKAVQGNAVIPFKCHRLQPRDFDEDLY
QARHLIENFFAKIKQYRAIATRYDRLASHFLSAIHLVSCVVWLN

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
749 bp249 aa79827+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTRRHALRDDQWEKIKDILPGQPSDVGVTAKDNRLFVEAVLYRYKTGIPWRDLPERFGDFRVVHTRFSRWSKKGVWEQVFNLLSEASDNEYAMLDATIVK
AHQHSAGKKRDQAIGRSKGGLTTKIHTRTDALGNPTGFYLTGGAAHDLCGSDELLDVSISQTWLADRAYDADARVIERIKAVQGNAVIPFKCHRLQPRDF
DEDLYQARHLIENFFAKIKQYRAIATRYDRLASHFLSAIHLVSCVVWLN

 

Blast result :
Comments
ISPssp5 is 74% aa similar to ISCaa13.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] Anna Ciok (2019) Direct submission.