ISPssp5
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Psychrobacter sp. | Psychrobacter sp. DAB_AL32B Psychrobacter sp. DAB_AL32B pP32BP2 |
DNA section
IS Length : 837 bp
Ends
IR Length : 16/17
IRL : GGGTGTGTCATCAATTAGCACAGTTATTTTAGAATAAGCTATACTAATTC
IRR : GGGCGTGTCATCAATTAAGCCAGACAACACAAGAAACCAGATGAATCGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tggtgtataaatctttgactccagc | TA | agtaaaaccagccctcatcagtcca | 2 |
DNA sequence
GGGTGTGTCATCAATTAGCACAGTTATTTTAGAATAAGCTATACTAATTCTATGTTTATCAAACTGAGCTCAATCCTCATGACAAGACGACATGCTCTAC
GTGATGACCAATGGGAGAAGATTAAAGACATCCTACCAGGTCAACCAAGTGACGTTGGTGTTACCGCCAAAGATAACCGATTATTCGTAGAAGCCGTTCT
GTACCGCTATAAGACCGGCATACCTTGGCGCGACCTACCTGAACGCTTTGGCGACTTTAGAGTGGTGCATACCCGTTTTAGCCGTTGGTCAAAGAAAGGG
GTATGGGAGCAAGTATTTAACTTGCTATCTGAGGCGTCTGACAATGAATACGCCATGCTCGACGCCACCATTGTCAAAGCCCACCAGCATAGCGCTGGAA
AAAAAGGGATCAAGCCATTGGGCGCAGTAAAGGTGGGCTGACGACTAAAATACATACTCGAACAGATGCATTAGGCAATCCTACTGGTTTTTATCTAACA
GGTGGCGCGGCTCATGACCTATGTGGCTCAGATGAACTGCTCGATGTCAGTATTAGCCAAACTTGGCTTGCCGATAGAGCTTACGATGCTGATGCCCGTG
TTATTGAACGCATTAAAGCTGTACAAGGCAATGCAGTCATACCGTTCAAATGTCATCGACTGCAGCCAAGAGATTTCGATGAAGATCTTTATCAAGCACG
GCATCTGATCGAGAACTTCTTCGCCAAGATTAAGCAGTACCGTGCGATTGCCACTCGATATGACAGGTTAGCGAGCCATTTCCTCAGTGCGATTCATCTG
GTTTCTTGTGTTGTCTGGCTTAATTGATGACACGCCC
GTGATGACCAATGGGAGAAGATTAAAGACATCCTACCAGGTCAACCAAGTGACGTTGGTGTTACCGCCAAAGATAACCGATTATTCGTAGAAGCCGTTCT
GTACCGCTATAAGACCGGCATACCTTGGCGCGACCTACCTGAACGCTTTGGCGACTTTAGAGTGGTGCATACCCGTTTTAGCCGTTGGTCAAAGAAAGGG
GTATGGGAGCAAGTATTTAACTTGCTATCTGAGGCGTCTGACAATGAATACGCCATGCTCGACGCCACCATTGTCAAAGCCCACCAGCATAGCGCTGGAA
AAAAAGGGATCAAGCCATTGGGCGCAGTAAAGGTGGGCTGACGACTAAAATACATACTCGAACAGATGCATTAGGCAATCCTACTGGTTTTTATCTAACA
GGTGGCGCGGCTCATGACCTATGTGGCTCAGATGAACTGCTCGATGTCAGTATTAGCCAAACTTGGCTTGCCGATAGAGCTTACGATGCTGATGCCCGTG
TTATTGAACGCATTAAAGCTGTACAAGGCAATGCAGTCATACCGTTCAAATGTCATCGACTGCAGCCAAGAGATTTCGATGAAGATCTTTATCAAGCACG
GCATCTGATCGAGAACTTCTTCGCCAAGATTAAGCAGTACCGTGCGATTGCCACTCGATATGACAGGTTAGCGAGCCATTTCCTCAGTGCGATTCATCTG
GTTTCTTGTGTTGTCTGGCTTAATTGATGACACGCCC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
363 bp | 120 aa | 79 | 441 | + | No |
Description : First part of the transposase
ORF sequence :
MTRRHALRDDQWEKIKDILPGQPSDVGVTAKDNRLFVEAVLYRYKTGIPWRDLPERFGDFRVVHTRFSRWSKKGVWEQVFNLLSEASDNEYAMLDATIVK
AHQHSAGKKGIKPLGAVKVG
AHQHSAGKKGIKPLGAVKVG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
435 bp | 144 aa | 393 | 827 | + | No |
Description : Second part of the transposase
ORF sequence :
RWKKRDQAIGRSKGGLTTKIHTRTDALGNPTGFYLTGGAAHDLCGSDELLDVSISQTWLADRAYDADARVIERIKAVQGNAVIPFKCHRLQPRDFDEDLY
QARHLIENFFAKIKQYRAIATRYDRLASHFLSAIHLVSCVVWLN
QARHLIENFFAKIKQYRAIATRYDRLASHFLSAIHLVSCVVWLN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
749 bp | 249 aa | 79 | 827 | + | Yes |
Chemistry : DDE
ORF sequence :
MTRRHALRDDQWEKIKDILPGQPSDVGVTAKDNRLFVEAVLYRYKTGIPWRDLPERFGDFRVVHTRFSRWSKKGVWEQVFNLLSEASDNEYAMLDATIVK
AHQHSAGKKRDQAIGRSKGGLTTKIHTRTDALGNPTGFYLTGGAAHDLCGSDELLDVSISQTWLADRAYDADARVIERIKAVQGNAVIPFKCHRLQPRDF
DEDLYQARHLIENFFAKIKQYRAIATRYDRLASHFLSAIHLVSCVVWLN
AHQHSAGKKRDQAIGRSKGGLTTKIHTRTDALGNPTGFYLTGGAAHDLCGSDELLDVSISQTWLADRAYDADARVIERIKAVQGNAVIPFKCHRLQPRDF
DEDLYQARHLIENFFAKIKQYRAIATRYDRLASHFLSAIHLVSCVVWLN
Blast result :
Comments
ISPssp5 is 74% aa similar to ISCaa13.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] Anna Ciok (2019) Direct submission.