ISBdi12

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens SEMIA 5080
Bradyrhizobium diazoefficiens
DNA section
IS Length : 1463 bp

Ends


IR Length : 8/10

IRL : ATGACGTAATTGCGGTCGGCGCCCGCGGCTCAAAAAGGTCCGCTATCTTC
IRR : ---CTGTCATTCGGCCCTTTAATTGCGGATTGTTGTCAATCACCTTTTAA

Comments : IR are not at the termini of the sequence according to the ruiles for this group.

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGCAGACGTCTTCGCGCC0

DNA sequence

ATGACGTAATTGCGGTCGGCGCCCGCGGCTCAAAAAGGTCCGCTATCTTCAAGCCTTCCCGCAATCTCACGAATCGGAGGGGGCCATGAAGCAATATGTT
GGGCTGGATGTCTCGCAAAAAGAAACGTCGGTATGTGTGGTCGACGAAGTGGGTCAGATCTTGTTCGAAGGAAAGGCAAAGTCCGCCCCCGGGGCGCTCG
CGGCATTGCTTCGCAAGCGGGCGCCACAAGCGGAGCGCATCGGATTTGAGACCGGGGCGATGGCGAGCTGGCTATGGCATGAACTTCGTAGGGTCGATCT
CCCAGTGGTTTGCATCGACGCGCGGCATGCCCACGCGGCTTTGTCCGTACGCATGAACAAGAGCGATCAGAATGATGCTCGAGGTCTGGCCGAACTGGTG
CGGGTTGATTGGTATCGAGAAGTCAAGGTCAAGAGCGAGGAAAGTCAGAAGATCCGCGCGATACTCGTCGCGAGATCCCGGCTCGTGTCCATGCGCCGAG
ACATCGAGAACCAGGTCCGGAGCTTGATCAAAGAATACGGCTTGCTGTTCCCGCGCGCAATCGGCCAGCAGTTCCGCAACCTGGTCAGCGAGCTATTGGG
CGATAATCATCCACTCCTTAGCGTGATCTCGCCGCTCCTGTTGATCCATGAGCATATCTGTCAGCAGCAGAACAAGTTCGACGACGAAGTTCGCCAGTTG
GCGAAGGCGGACGAGACGACGCGCCGCCTAATGACCGTTCCCGGTGTCGGCGTGGTGACCGCCTTGACTTTCCGCCATACGATCGATGACCCATTGTCGG
CGTTGACAGTCGGCGCCTACCTCGGCCTTACACCTCGGCGCAACCAATCTGGCGAAACTGACATCAACGGCAAGATATCTCGATGGGGCGACCGGCTTCT
CCGAACCTACTTGTTTGAGGCCGCCACCGTACTTCTCTATCGGACAAAGAAGTGGTCTTCCCTCAAGGCCTGGGGCATGAAGCTCGCCAAGCGGATCGGT
ATGAGGAAGGCAAAGGTCGCTGTCGCCCGAAAGATCGCAGTCATCCTTCACTGCATCTGGGTCGATGGCACATCCTTCGACTGGGGGCAGCCGCAGCCAG
TCTGATATTTGCTCGCAAGTTCCTGGTCCGGTCTGCCGGACTGGCGATGTCCCGCTGGGACGGTGTTGAGGCGACCTCGTTCATTCGGCTGGTGGCGGCT
CGACCGTACTCCGCTGCAAACGTTGAGGCGTCCGACCCGGACATCATCATGAGGCGCTGCGCGACCTCGGAAAGGACCGTGACCCCAGTGAAGACATAAC
CAGCCCGGGCGATCCAATGCCTGGCCGGCAAAGTACGCATCAGCCGCGCTCGCGCCGTCTCCGCAACCCTGACCAGCTCCGACAGCGCGAGCGCTACCGT
CGTGCCGTCGGAAAGTTTAAAAGGTGATTGACAACAATCCGCAATTAAAGGGCCGAATGACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp339 aa861105-No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKQYVGLDVSQKETSVCVVDEVGQILFEGKAKSAPGALAALLRKRAPQAERIGFETGAMASWLWHELRRVDLPVVCIDARHAHAALSVRMNKSDQNDARG
LAELVRVDWYREVKVKSEESQKIRAILVARSRLVSMRRDIENQVRSLIKEYGLLFPRAIGQQFRNLVSELLGDNHPLLSVISPLLLIHEHICQQQNKFDD
EVRQLAKADETTRRLMTVPGVGVVTALTFRHTIDDPLSALTVGAYLGLTPRRNQSGETDINGKISRWGDRLLRTYLFEAATVLLYRTKKWSSLKAWGMKL
AKRIGMRKAKVAVARKIAVILHCIWVDGTSFDWGQPQPV

 

Blast result :
Comments
ISBdi12 is 64% aa similar to ISAzs32.
References
1] Gesiele Carvalho (2018) Direct submission.