ISBdi12
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 Bradyrhizobium diazoefficiens |
DNA section
IS Length : 1463 bp
Ends
IR Length : 8/10
IRL : ATGACGTAATTGCGGTCGGCGCCCGCGGCTCAAAAAGGTCCGCTATCTTC
IRR : ---CTGTCATTCGGCCCTTTAATTGCGGATTGTTGTCAATCACCTTTTAA
Comments : IR are not at the termini of the sequence according to the ruiles for this group.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTGCAGACG | TCTTCGCGCC | 0 |
DNA sequence
ATGACGTAATTGCGGTCGGCGCCCGCGGCTCAAAAAGGTCCGCTATCTTCAAGCCTTCCCGCAATCTCACGAATCGGAGGGGGCCATGAAGCAATATGTT
GGGCTGGATGTCTCGCAAAAAGAAACGTCGGTATGTGTGGTCGACGAAGTGGGTCAGATCTTGTTCGAAGGAAAGGCAAAGTCCGCCCCCGGGGCGCTCG
CGGCATTGCTTCGCAAGCGGGCGCCACAAGCGGAGCGCATCGGATTTGAGACCGGGGCGATGGCGAGCTGGCTATGGCATGAACTTCGTAGGGTCGATCT
CCCAGTGGTTTGCATCGACGCGCGGCATGCCCACGCGGCTTTGTCCGTACGCATGAACAAGAGCGATCAGAATGATGCTCGAGGTCTGGCCGAACTGGTG
CGGGTTGATTGGTATCGAGAAGTCAAGGTCAAGAGCGAGGAAAGTCAGAAGATCCGCGCGATACTCGTCGCGAGATCCCGGCTCGTGTCCATGCGCCGAG
ACATCGAGAACCAGGTCCGGAGCTTGATCAAAGAATACGGCTTGCTGTTCCCGCGCGCAATCGGCCAGCAGTTCCGCAACCTGGTCAGCGAGCTATTGGG
CGATAATCATCCACTCCTTAGCGTGATCTCGCCGCTCCTGTTGATCCATGAGCATATCTGTCAGCAGCAGAACAAGTTCGACGACGAAGTTCGCCAGTTG
GCGAAGGCGGACGAGACGACGCGCCGCCTAATGACCGTTCCCGGTGTCGGCGTGGTGACCGCCTTGACTTTCCGCCATACGATCGATGACCCATTGTCGG
CGTTGACAGTCGGCGCCTACCTCGGCCTTACACCTCGGCGCAACCAATCTGGCGAAACTGACATCAACGGCAAGATATCTCGATGGGGCGACCGGCTTCT
CCGAACCTACTTGTTTGAGGCCGCCACCGTACTTCTCTATCGGACAAAGAAGTGGTCTTCCCTCAAGGCCTGGGGCATGAAGCTCGCCAAGCGGATCGGT
ATGAGGAAGGCAAAGGTCGCTGTCGCCCGAAAGATCGCAGTCATCCTTCACTGCATCTGGGTCGATGGCACATCCTTCGACTGGGGGCAGCCGCAGCCAG
TCTGATATTTGCTCGCAAGTTCCTGGTCCGGTCTGCCGGACTGGCGATGTCCCGCTGGGACGGTGTTGAGGCGACCTCGTTCATTCGGCTGGTGGCGGCT
CGACCGTACTCCGCTGCAAACGTTGAGGCGTCCGACCCGGACATCATCATGAGGCGCTGCGCGACCTCGGAAAGGACCGTGACCCCAGTGAAGACATAAC
CAGCCCGGGCGATCCAATGCCTGGCCGGCAAAGTACGCATCAGCCGCGCTCGCGCCGTCTCCGCAACCCTGACCAGCTCCGACAGCGCGAGCGCTACCGT
CGTGCCGTCGGAAAGTTTAAAAGGTGATTGACAACAATCCGCAATTAAAGGGCCGAATGACAG
GGGCTGGATGTCTCGCAAAAAGAAACGTCGGTATGTGTGGTCGACGAAGTGGGTCAGATCTTGTTCGAAGGAAAGGCAAAGTCCGCCCCCGGGGCGCTCG
CGGCATTGCTTCGCAAGCGGGCGCCACAAGCGGAGCGCATCGGATTTGAGACCGGGGCGATGGCGAGCTGGCTATGGCATGAACTTCGTAGGGTCGATCT
CCCAGTGGTTTGCATCGACGCGCGGCATGCCCACGCGGCTTTGTCCGTACGCATGAACAAGAGCGATCAGAATGATGCTCGAGGTCTGGCCGAACTGGTG
CGGGTTGATTGGTATCGAGAAGTCAAGGTCAAGAGCGAGGAAAGTCAGAAGATCCGCGCGATACTCGTCGCGAGATCCCGGCTCGTGTCCATGCGCCGAG
ACATCGAGAACCAGGTCCGGAGCTTGATCAAAGAATACGGCTTGCTGTTCCCGCGCGCAATCGGCCAGCAGTTCCGCAACCTGGTCAGCGAGCTATTGGG
CGATAATCATCCACTCCTTAGCGTGATCTCGCCGCTCCTGTTGATCCATGAGCATATCTGTCAGCAGCAGAACAAGTTCGACGACGAAGTTCGCCAGTTG
GCGAAGGCGGACGAGACGACGCGCCGCCTAATGACCGTTCCCGGTGTCGGCGTGGTGACCGCCTTGACTTTCCGCCATACGATCGATGACCCATTGTCGG
CGTTGACAGTCGGCGCCTACCTCGGCCTTACACCTCGGCGCAACCAATCTGGCGAAACTGACATCAACGGCAAGATATCTCGATGGGGCGACCGGCTTCT
CCGAACCTACTTGTTTGAGGCCGCCACCGTACTTCTCTATCGGACAAAGAAGTGGTCTTCCCTCAAGGCCTGGGGCATGAAGCTCGCCAAGCGGATCGGT
ATGAGGAAGGCAAAGGTCGCTGTCGCCCGAAAGATCGCAGTCATCCTTCACTGCATCTGGGTCGATGGCACATCCTTCGACTGGGGGCAGCCGCAGCCAG
TCTGATATTTGCTCGCAAGTTCCTGGTCCGGTCTGCCGGACTGGCGATGTCCCGCTGGGACGGTGTTGAGGCGACCTCGTTCATTCGGCTGGTGGCGGCT
CGACCGTACTCCGCTGCAAACGTTGAGGCGTCCGACCCGGACATCATCATGAGGCGCTGCGCGACCTCGGAAAGGACCGTGACCCCAGTGAAGACATAAC
CAGCCCGGGCGATCCAATGCCTGGCCGGCAAAGTACGCATCAGCCGCGCTCGCGCCGTCTCCGCAACCCTGACCAGCTCCGACAGCGCGAGCGCTACCGT
CGTGCCGTCGGAAAGTTTAAAAGGTGATTGACAACAATCCGCAATTAAAGGGCCGAATGACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1020 bp | 339 aa | 86 | 1105 | - | No |
Chemistry : DEDD
ORF sequence :
MKQYVGLDVSQKETSVCVVDEVGQILFEGKAKSAPGALAALLRKRAPQAERIGFETGAMASWLWHELRRVDLPVVCIDARHAHAALSVRMNKSDQNDARG
LAELVRVDWYREVKVKSEESQKIRAILVARSRLVSMRRDIENQVRSLIKEYGLLFPRAIGQQFRNLVSELLGDNHPLLSVISPLLLIHEHICQQQNKFDD
EVRQLAKADETTRRLMTVPGVGVVTALTFRHTIDDPLSALTVGAYLGLTPRRNQSGETDINGKISRWGDRLLRTYLFEAATVLLYRTKKWSSLKAWGMKL
AKRIGMRKAKVAVARKIAVILHCIWVDGTSFDWGQPQPV
LAELVRVDWYREVKVKSEESQKIRAILVARSRLVSMRRDIENQVRSLIKEYGLLFPRAIGQQFRNLVSELLGDNHPLLSVISPLLLIHEHICQQQNKFDD
EVRQLAKADETTRRLMTVPGVGVVTALTFRHTIDDPLSALTVGAYLGLTPRRNQSGETDINGKISRWGDRLLRTYLFEAATVLLYRTKKWSSLKAWGMKL
AKRIGMRKAKVAVARKIAVILHCIWVDGTSFDWGQPQPV
Blast result :
Comments
ISBdi12 is 64% aa similar to ISAzs32.
References
1] Gesiele Carvalho (2018) Direct submission.