ISBdi10

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens SEMIA 5080
Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens USDA 122
DNA section
IS Length : 1411 bp

Ends


IR Length : 11

IRL : AGATGCCGTAATGGGCCCTGCTTCGAGCAAGGGGTCATGATGGTGGCTGT
IRR : TCTGTAATGGGCCCGATGATGTCAAGCCTCCCGAGTGAACGTCTCGTCGC

Comments : IRs are not at the termini of the sequence.

Insertion site


Left flankDirect repeatRight flankDR Length
AAGTAGAACTAGGCCGTGAA0

DNA sequence

AGATGCCGTAATGGGCCCTGCTTCGAGCAAGGGGTCATGATGGTGGCTGTCCCCCGATAGATGATGAAACGGGGTCACGACTTGAGTCGGCCCCAAGCAT
CTAGAGACGGAGGACAGCCGTGGAGAACTATGCCGGAATCGACGTGTCATTGGAACTGTCGAGCGTGTGCGTTGTGGATGCCCAGGGTAAGATCCTGAAG
GAAGCGAAGGTCGCGAGCGAACCCGACGCCTTAGTCGAGTTTTTCGAGAGGCTTGGCTTTGCAGCAAAGCGAATTGGGCTGGAAGCGGGGCCGCTGTCGC
AATGGCTGCATGCAGGCTTGAAAGGAGCGGGGCTCGAGGCAGTCCTGCTCGAGACGCGACATGTTAAGGCCGCATTGTCTGCAATGACGGTGAAGACTGA
TCGCAAGGATGCCCGCGGGATCGCCCAGTTGATCCGGATGGGATGGTTCCAGCCGGTACACGCGAAGTCGGTCGGCGCCCAGGAGATCCGGGCACTCCTG
ATCGCACGCAAACAGCTTCTCGGGCGACTTATCGATGTGGAATTAAGTATCCGAGGGATTTTGCGCGGCTTCGGGCTGAAGGTTGGCCCGGTGACGCGGA
GGAGTTTCGAAGCGCGGATCCGAGAGTTGGTTGCGGGGCAAGCGACATTGGAGCGTATTGCCAGTGCGATGCTTTCGGCACGATCGGCCTTGAAGGCAGA
GTACGGAAGGCTGCACAAGGCTGTACTGGCAATTGTGCGTGACGATGCAGTCTGTCGCCGGCTGATGACAGTACCGGGCGTTGGCCCCCTGGTGGCTGTT
ACCTACAAATCGGCGATTGATGCCCCTCATCGCATCGTAAAATCGAAGGCGGCAGGCGCGCTGTTCGGGCTTACGCCAAAGAAATATCAATCGGGAGAAA
AGGACGTCACAGGCGGGATCACGTTGGCCGGCGACGAGACGGTGCGCACGGTGTTGTATGAAGCCGCCAATGTTCTGCTGTCGCGCATCACGCGGTTCTC
AAAACTCAAGCGCTGGGGGATGGACGTCGCCAAGCGGCGAGGCTCAAAGCGCGCAAAGGTCGCCCTGGCACGCAAGCTCGCAGTGATCCTGCATCGGATC
TGGATCGACGGCACAACTTACCGATGGACTGACGCCGGCCCGATCGCAGCATAGAAAACGTCTAGGAGATCAAGAACGCAACCGAGCTGAACTGAAGCTC
GGTGCCCGAAGTCCCGTCGCCGGGACGGTGGATCCGGTGAAGCCGTTACACGGCCAGTGGTCGTCATCTGACGAACCCCGCGCATCTAGATAGGCTCACC
GCTCCCTCTGACAGCATGATGTGGCGGCCAGGCGTTGACCACGGACAGAAGCATGAGCTCGGCGACGAGACGTTCACTCGGGAGGCTTGACATCATCGGG
CCCATTACAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1035 bp344 aa1201154-No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MENYAGIDVSLELSSVCVVDAQGKILKEAKVASEPDALVEFFERLGFAAKRIGLEAGPLSQWLHAGLKGAGLEAVLLETRHVKAALSAMTVKTDRKDARG
IAQLIRMGWFQPVHAKSVGAQEIRALLIARKQLLGRLIDVELSIRGILRGFGLKVGPVTRRSFEARIRELVAGQATLERIASAMLSARSALKAEYGRLHK
AVLAIVRDDAVCRRLMTVPGVGPLVAVTYKSAIDAPHRIVKSKAAGALFGLTPKKYQSGEKDVTGGITLAGDETVRTVLYEAANVLLSRITRFSKLKRWG
MDVAKRRGSKRAKVALARKLAVILHRIWIDGTTYRWTDAGPIAA

 

Blast result :
Comments
ISBdi10 is 79% aa similar to ISRhru3.
References
1] Gesiele Carvalho (2018) Direct submission.