ISBdi10
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 122 |
DNA section
IS Length : 1411 bp
Ends
IR Length : 11
IRL : AGATGCCGTAATGGGCCCTGCTTCGAGCAAGGGGTCATGATGGTGGCTGT
IRR : TCTGTAATGGGCCCGATGATGTCAAGCCTCCCGAGTGAACGTCTCGTCGC
Comments : IRs are not at the termini of the sequence.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGTAGAACT | AGGCCGTGAA | 0 |
DNA sequence
AGATGCCGTAATGGGCCCTGCTTCGAGCAAGGGGTCATGATGGTGGCTGTCCCCCGATAGATGATGAAACGGGGTCACGACTTGAGTCGGCCCCAAGCAT
CTAGAGACGGAGGACAGCCGTGGAGAACTATGCCGGAATCGACGTGTCATTGGAACTGTCGAGCGTGTGCGTTGTGGATGCCCAGGGTAAGATCCTGAAG
GAAGCGAAGGTCGCGAGCGAACCCGACGCCTTAGTCGAGTTTTTCGAGAGGCTTGGCTTTGCAGCAAAGCGAATTGGGCTGGAAGCGGGGCCGCTGTCGC
AATGGCTGCATGCAGGCTTGAAAGGAGCGGGGCTCGAGGCAGTCCTGCTCGAGACGCGACATGTTAAGGCCGCATTGTCTGCAATGACGGTGAAGACTGA
TCGCAAGGATGCCCGCGGGATCGCCCAGTTGATCCGGATGGGATGGTTCCAGCCGGTACACGCGAAGTCGGTCGGCGCCCAGGAGATCCGGGCACTCCTG
ATCGCACGCAAACAGCTTCTCGGGCGACTTATCGATGTGGAATTAAGTATCCGAGGGATTTTGCGCGGCTTCGGGCTGAAGGTTGGCCCGGTGACGCGGA
GGAGTTTCGAAGCGCGGATCCGAGAGTTGGTTGCGGGGCAAGCGACATTGGAGCGTATTGCCAGTGCGATGCTTTCGGCACGATCGGCCTTGAAGGCAGA
GTACGGAAGGCTGCACAAGGCTGTACTGGCAATTGTGCGTGACGATGCAGTCTGTCGCCGGCTGATGACAGTACCGGGCGTTGGCCCCCTGGTGGCTGTT
ACCTACAAATCGGCGATTGATGCCCCTCATCGCATCGTAAAATCGAAGGCGGCAGGCGCGCTGTTCGGGCTTACGCCAAAGAAATATCAATCGGGAGAAA
AGGACGTCACAGGCGGGATCACGTTGGCCGGCGACGAGACGGTGCGCACGGTGTTGTATGAAGCCGCCAATGTTCTGCTGTCGCGCATCACGCGGTTCTC
AAAACTCAAGCGCTGGGGGATGGACGTCGCCAAGCGGCGAGGCTCAAAGCGCGCAAAGGTCGCCCTGGCACGCAAGCTCGCAGTGATCCTGCATCGGATC
TGGATCGACGGCACAACTTACCGATGGACTGACGCCGGCCCGATCGCAGCATAGAAAACGTCTAGGAGATCAAGAACGCAACCGAGCTGAACTGAAGCTC
GGTGCCCGAAGTCCCGTCGCCGGGACGGTGGATCCGGTGAAGCCGTTACACGGCCAGTGGTCGTCATCTGACGAACCCCGCGCATCTAGATAGGCTCACC
GCTCCCTCTGACAGCATGATGTGGCGGCCAGGCGTTGACCACGGACAGAAGCATGAGCTCGGCGACGAGACGTTCACTCGGGAGGCTTGACATCATCGGG
CCCATTACAGA
CTAGAGACGGAGGACAGCCGTGGAGAACTATGCCGGAATCGACGTGTCATTGGAACTGTCGAGCGTGTGCGTTGTGGATGCCCAGGGTAAGATCCTGAAG
GAAGCGAAGGTCGCGAGCGAACCCGACGCCTTAGTCGAGTTTTTCGAGAGGCTTGGCTTTGCAGCAAAGCGAATTGGGCTGGAAGCGGGGCCGCTGTCGC
AATGGCTGCATGCAGGCTTGAAAGGAGCGGGGCTCGAGGCAGTCCTGCTCGAGACGCGACATGTTAAGGCCGCATTGTCTGCAATGACGGTGAAGACTGA
TCGCAAGGATGCCCGCGGGATCGCCCAGTTGATCCGGATGGGATGGTTCCAGCCGGTACACGCGAAGTCGGTCGGCGCCCAGGAGATCCGGGCACTCCTG
ATCGCACGCAAACAGCTTCTCGGGCGACTTATCGATGTGGAATTAAGTATCCGAGGGATTTTGCGCGGCTTCGGGCTGAAGGTTGGCCCGGTGACGCGGA
GGAGTTTCGAAGCGCGGATCCGAGAGTTGGTTGCGGGGCAAGCGACATTGGAGCGTATTGCCAGTGCGATGCTTTCGGCACGATCGGCCTTGAAGGCAGA
GTACGGAAGGCTGCACAAGGCTGTACTGGCAATTGTGCGTGACGATGCAGTCTGTCGCCGGCTGATGACAGTACCGGGCGTTGGCCCCCTGGTGGCTGTT
ACCTACAAATCGGCGATTGATGCCCCTCATCGCATCGTAAAATCGAAGGCGGCAGGCGCGCTGTTCGGGCTTACGCCAAAGAAATATCAATCGGGAGAAA
AGGACGTCACAGGCGGGATCACGTTGGCCGGCGACGAGACGGTGCGCACGGTGTTGTATGAAGCCGCCAATGTTCTGCTGTCGCGCATCACGCGGTTCTC
AAAACTCAAGCGCTGGGGGATGGACGTCGCCAAGCGGCGAGGCTCAAAGCGCGCAAAGGTCGCCCTGGCACGCAAGCTCGCAGTGATCCTGCATCGGATC
TGGATCGACGGCACAACTTACCGATGGACTGACGCCGGCCCGATCGCAGCATAGAAAACGTCTAGGAGATCAAGAACGCAACCGAGCTGAACTGAAGCTC
GGTGCCCGAAGTCCCGTCGCCGGGACGGTGGATCCGGTGAAGCCGTTACACGGCCAGTGGTCGTCATCTGACGAACCCCGCGCATCTAGATAGGCTCACC
GCTCCCTCTGACAGCATGATGTGGCGGCCAGGCGTTGACCACGGACAGAAGCATGAGCTCGGCGACGAGACGTTCACTCGGGAGGCTTGACATCATCGGG
CCCATTACAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1035 bp | 344 aa | 120 | 1154 | - | No |
Chemistry : DEDD
ORF sequence :
MENYAGIDVSLELSSVCVVDAQGKILKEAKVASEPDALVEFFERLGFAAKRIGLEAGPLSQWLHAGLKGAGLEAVLLETRHVKAALSAMTVKTDRKDARG
IAQLIRMGWFQPVHAKSVGAQEIRALLIARKQLLGRLIDVELSIRGILRGFGLKVGPVTRRSFEARIRELVAGQATLERIASAMLSARSALKAEYGRLHK
AVLAIVRDDAVCRRLMTVPGVGPLVAVTYKSAIDAPHRIVKSKAAGALFGLTPKKYQSGEKDVTGGITLAGDETVRTVLYEAANVLLSRITRFSKLKRWG
MDVAKRRGSKRAKVALARKLAVILHRIWIDGTTYRWTDAGPIAA
IAQLIRMGWFQPVHAKSVGAQEIRALLIARKQLLGRLIDVELSIRGILRGFGLKVGPVTRRSFEARIRELVAGQATLERIASAMLSARSALKAEYGRLHK
AVLAIVRDDAVCRRLMTVPGVGPLVAVTYKSAIDAPHRIVKSKAAGALFGLTPKKYQSGEKDVTGGITLAGDETVRTVLYEAANVLLSRITRFSKLKRWG
MDVAKRRGSKRAKVALARKLAVILHRIWIDGTTYRWTDAGPIAA
Blast result :
Comments
ISBdi10 is 79% aa similar to ISRhru3.
References
1] Gesiele Carvalho (2018) Direct submission.