ISBdi4
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 122 |
DNA section
IS Length : 1697 bp
Ends
IR Length : 16/17
IRL : CCAGGCTGTGTGAAAACCCTGTCGATGCTATGATTCCCTTGCTGAATCGG
IRR : CCAGGCTGTGTAAAAACGTTTTTTCGCCCCCCAAAACTGCACGCAACCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCTAAGGGC | GTCAAAAGCG | 0 |
DNA sequence
CCAGGCTGTGTGAAAACCCTGTCGATGCTATGATTCCCTTGCTGAATCGGCGGGGGGGAGTGATGCATGGTTTCGTTCAAGGGGCGGATCGCCAGCAGAC
GACGCTGTTTCCGGAATGCCTCGATGATTGGGTGGATGAGAGCAATTCCATTCGCGCGGTCGATGTGTTCGTGGATGCGTTGGAACTCCGCGACCTCGGG
TTCGATGGCGTTGATCCAGCAGCGACTGGCCGGCCGGCGTACCATCCTTCGCCGATGCTCAAGCTCTACATTTACGGCTATCTCAACCGGGTCCAATCGA
GCCGGCGGCTGGAGCGTGAGGCTGGCCGGAATCTTGAGGTGATGTGGCTGACCGGGCGACTTGCGCCGGATCACAAAACCATCGCCGACTTCCGCAAGGA
CAATGGCCCCGCGATCAAGAAGGTTTGCGCCCAATTCGTCGAGTTGTGCCGCAAGATGGGCCTGCTGACGAAGGCCAGCGTTGCCATCGACGGCAGCAAG
TTCAAGGCTGTGAACAGTCGCGACAACAACTTCACGCAAGGCAAGATCCAGCGCCGCCAGAAGCAGATCGAAGAGAGCGTGGCGCGCTACATGAGTCAAC
TGGACACCGCCGACCGCCAGACTGCCGCAGGAGAAGAGCCGTCGGAAACGGTACTGCTGACCAAGACGCGGCTGAAGGAAAAGCTGGCGAAGCTCGAAGA
AGAAGTGAAGCGGCTGGCGGCGATTGAAAAGGCATTGCTCGCCTCGCCCGACAGGCAGATATCGCTGACCGATCCCGATTGCCGTTCGATGGCAACGAGC
GGGCGCGGCTCCGGCATGGTCGCCTACAACGTACAAAGTGCGGTCGACACCACGAACCATCTGATTGTCGCGCACGAGGTCACCAACGTCGGCACCGATA
GATCGCAACTGGCGACGATGGCGCAGGCGGCGAAAGCCGCGCTACGCAGCGATCATTTGGACGTCGTTGCGGATCGGGGCTACTTTAAAGGTGAGGAACT
CCTGGCATGCGAGCAGGCCGGGGTCGCGGTCACGCTACCCAAGCCGCAAACCTCGGGAGCCAAGTCGGCAGGCCGCTTTGGGAAACCTGATTTTGTCTAT
TTGGCCAAGGACGACGTCTATCGCTGCCCGGCCGGCGAGAAGCTGGCGCACCACTTCACCGCTGATGAAGATGGCCAGAAAATGCGGATTTACTTGACGA
AGGCGTGCCGCACATGCCCGTTCAAGGATCAATGCACAACGTCCAACGAGCGCCGCATCAAACGCTGGGAACACGAACACGTCGTCGAGGCCGCGCAGAC
GCGGCTCGATCAGAACCCGCAAGCCATGCGTGTGCGCCGCGAAACCGTCGAGCATCCGTTCGCCACACTGAAGATGCGAATGGGCGCAACACACTTTCTA
ATGAAGCGGCTGCCCAATGTCGCGACCGAAATGGCGCTGAACGTACTCGCCTACAACCTTACGCGCGTAATGAACATCGTCGGCATCAAGCCGCTCCTGG
TGGCAATCCGGGCGTGAAGAGCTCGTGCTGTTATGCGCATCGTGTGACCGTTCAGGTCGGTCAGCGTGGCCAGAGCTTGCGCCCGGGTTGACTCCGGAAT
CGATAAGCAAAAATATGCTCAGACCGTCGTGTCGACGCGGATCGTCCCCGGTTGCGTGCAGTTTTGGGGGGCGAAAAAACGTTTTTACACAGCCTGG
GACGCTGTTTCCGGAATGCCTCGATGATTGGGTGGATGAGAGCAATTCCATTCGCGCGGTCGATGTGTTCGTGGATGCGTTGGAACTCCGCGACCTCGGG
TTCGATGGCGTTGATCCAGCAGCGACTGGCCGGCCGGCGTACCATCCTTCGCCGATGCTCAAGCTCTACATTTACGGCTATCTCAACCGGGTCCAATCGA
GCCGGCGGCTGGAGCGTGAGGCTGGCCGGAATCTTGAGGTGATGTGGCTGACCGGGCGACTTGCGCCGGATCACAAAACCATCGCCGACTTCCGCAAGGA
CAATGGCCCCGCGATCAAGAAGGTTTGCGCCCAATTCGTCGAGTTGTGCCGCAAGATGGGCCTGCTGACGAAGGCCAGCGTTGCCATCGACGGCAGCAAG
TTCAAGGCTGTGAACAGTCGCGACAACAACTTCACGCAAGGCAAGATCCAGCGCCGCCAGAAGCAGATCGAAGAGAGCGTGGCGCGCTACATGAGTCAAC
TGGACACCGCCGACCGCCAGACTGCCGCAGGAGAAGAGCCGTCGGAAACGGTACTGCTGACCAAGACGCGGCTGAAGGAAAAGCTGGCGAAGCTCGAAGA
AGAAGTGAAGCGGCTGGCGGCGATTGAAAAGGCATTGCTCGCCTCGCCCGACAGGCAGATATCGCTGACCGATCCCGATTGCCGTTCGATGGCAACGAGC
GGGCGCGGCTCCGGCATGGTCGCCTACAACGTACAAAGTGCGGTCGACACCACGAACCATCTGATTGTCGCGCACGAGGTCACCAACGTCGGCACCGATA
GATCGCAACTGGCGACGATGGCGCAGGCGGCGAAAGCCGCGCTACGCAGCGATCATTTGGACGTCGTTGCGGATCGGGGCTACTTTAAAGGTGAGGAACT
CCTGGCATGCGAGCAGGCCGGGGTCGCGGTCACGCTACCCAAGCCGCAAACCTCGGGAGCCAAGTCGGCAGGCCGCTTTGGGAAACCTGATTTTGTCTAT
TTGGCCAAGGACGACGTCTATCGCTGCCCGGCCGGCGAGAAGCTGGCGCACCACTTCACCGCTGATGAAGATGGCCAGAAAATGCGGATTTACTTGACGA
AGGCGTGCCGCACATGCCCGTTCAAGGATCAATGCACAACGTCCAACGAGCGCCGCATCAAACGCTGGGAACACGAACACGTCGTCGAGGCCGCGCAGAC
GCGGCTCGATCAGAACCCGCAAGCCATGCGTGTGCGCCGCGAAACCGTCGAGCATCCGTTCGCCACACTGAAGATGCGAATGGGCGCAACACACTTTCTA
ATGAAGCGGCTGCCCAATGTCGCGACCGAAATGGCGCTGAACGTACTCGCCTACAACCTTACGCGCGTAATGAACATCGTCGGCATCAAGCCGCTCCTGG
TGGCAATCCGGGCGTGAAGAGCTCGTGCTGTTATGCGCATCGTGTGACCGTTCAGGTCGGTCAGCGTGGCCAGAGCTTGCGCCCGGGTTGACTCCGGAAT
CGATAAGCAAAAATATGCTCAGACCGTCGTGTCGACGCGGATCGTCCCCGGTTGCGTGCAGTTTTGGGGGGCGAAAAAACGTTTTTACACAGCCTGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1455 bp | 484 aa | 63 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MHGFVQGADRQQTTLFPECLDDWVDESNSIRAVDVFVDALELRDLGFDGVDPAATGRPAYHPSPMLKLYIYGYLNRVQSSRRLEREAGRNLEVMWLTGRL
APDHKTIADFRKDNGPAIKKVCAQFVELCRKMGLLTKASVAIDGSKFKAVNSRDNNFTQGKIQRRQKQIEESVARYMSQLDTADRQTAAGEEPSETVLLT
KTRLKEKLAKLEEEVKRLAAIEKALLASPDRQISLTDPDCRSMATSGRGSGMVAYNVQSAVDTTNHLIVAHEVTNVGTDRSQLATMAQAAKAALRSDHLD
VVADRGYFKGEELLACEQAGVAVTLPKPQTSGAKSAGRFGKPDFVYLAKDDVYRCPAGEKLAHHFTADEDGQKMRIYLTKACRTCPFKDQCTTSNERRIK
RWEHEHVVEAAQTRLDQNPQAMRVRRETVEHPFATLKMRMGATHFLMKRLPNVATEMALNVLAYNLTRVMNIVGIKPLLVAIRA
APDHKTIADFRKDNGPAIKKVCAQFVELCRKMGLLTKASVAIDGSKFKAVNSRDNNFTQGKIQRRQKQIEESVARYMSQLDTADRQTAAGEEPSETVLLT
KTRLKEKLAKLEEEVKRLAAIEKALLASPDRQISLTDPDCRSMATSGRGSGMVAYNVQSAVDTTNHLIVAHEVTNVGTDRSQLATMAQAAKAALRSDHLD
VVADRGYFKGEELLACEQAGVAVTLPKPQTSGAKSAGRFGKPDFVYLAKDDVYRCPAGEKLAHHFTADEDGQKMRIYLTKACRTCPFKDQCTTSNERRIK
RWEHEHVVEAAQTRLDQNPQAMRVRRETVEHPFATLKMRMGATHFLMKRLPNVATEMALNVLAYNLTRVMNIVGIKPLLVAIRA
Blast result :
Comments
ISBdi4 is 76% aa similar to ISPpu16
References
1] Gesiele Carvalho (2018) Direct submission.