ISBdi4

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens SEMIA 5080
Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens USDA 122
DNA section
IS Length : 1697 bp

Ends


IR Length : 16/17

IRL : CCAGGCTGTGTGAAAACCCTGTCGATGCTATGATTCCCTTGCTGAATCGG
IRR : CCAGGCTGTGTAAAAACGTTTTTTCGCCCCCCAAAACTGCACGCAACCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGCTAAGGGCGTCAAAAGCG0

DNA sequence

CCAGGCTGTGTGAAAACCCTGTCGATGCTATGATTCCCTTGCTGAATCGGCGGGGGGGAGTGATGCATGGTTTCGTTCAAGGGGCGGATCGCCAGCAGAC
GACGCTGTTTCCGGAATGCCTCGATGATTGGGTGGATGAGAGCAATTCCATTCGCGCGGTCGATGTGTTCGTGGATGCGTTGGAACTCCGCGACCTCGGG
TTCGATGGCGTTGATCCAGCAGCGACTGGCCGGCCGGCGTACCATCCTTCGCCGATGCTCAAGCTCTACATTTACGGCTATCTCAACCGGGTCCAATCGA
GCCGGCGGCTGGAGCGTGAGGCTGGCCGGAATCTTGAGGTGATGTGGCTGACCGGGCGACTTGCGCCGGATCACAAAACCATCGCCGACTTCCGCAAGGA
CAATGGCCCCGCGATCAAGAAGGTTTGCGCCCAATTCGTCGAGTTGTGCCGCAAGATGGGCCTGCTGACGAAGGCCAGCGTTGCCATCGACGGCAGCAAG
TTCAAGGCTGTGAACAGTCGCGACAACAACTTCACGCAAGGCAAGATCCAGCGCCGCCAGAAGCAGATCGAAGAGAGCGTGGCGCGCTACATGAGTCAAC
TGGACACCGCCGACCGCCAGACTGCCGCAGGAGAAGAGCCGTCGGAAACGGTACTGCTGACCAAGACGCGGCTGAAGGAAAAGCTGGCGAAGCTCGAAGA
AGAAGTGAAGCGGCTGGCGGCGATTGAAAAGGCATTGCTCGCCTCGCCCGACAGGCAGATATCGCTGACCGATCCCGATTGCCGTTCGATGGCAACGAGC
GGGCGCGGCTCCGGCATGGTCGCCTACAACGTACAAAGTGCGGTCGACACCACGAACCATCTGATTGTCGCGCACGAGGTCACCAACGTCGGCACCGATA
GATCGCAACTGGCGACGATGGCGCAGGCGGCGAAAGCCGCGCTACGCAGCGATCATTTGGACGTCGTTGCGGATCGGGGCTACTTTAAAGGTGAGGAACT
CCTGGCATGCGAGCAGGCCGGGGTCGCGGTCACGCTACCCAAGCCGCAAACCTCGGGAGCCAAGTCGGCAGGCCGCTTTGGGAAACCTGATTTTGTCTAT
TTGGCCAAGGACGACGTCTATCGCTGCCCGGCCGGCGAGAAGCTGGCGCACCACTTCACCGCTGATGAAGATGGCCAGAAAATGCGGATTTACTTGACGA
AGGCGTGCCGCACATGCCCGTTCAAGGATCAATGCACAACGTCCAACGAGCGCCGCATCAAACGCTGGGAACACGAACACGTCGTCGAGGCCGCGCAGAC
GCGGCTCGATCAGAACCCGCAAGCCATGCGTGTGCGCCGCGAAACCGTCGAGCATCCGTTCGCCACACTGAAGATGCGAATGGGCGCAACACACTTTCTA
ATGAAGCGGCTGCCCAATGTCGCGACCGAAATGGCGCTGAACGTACTCGCCTACAACCTTACGCGCGTAATGAACATCGTCGGCATCAAGCCGCTCCTGG
TGGCAATCCGGGCGTGAAGAGCTCGTGCTGTTATGCGCATCGTGTGACCGTTCAGGTCGGTCAGCGTGGCCAGAGCTTGCGCCCGGGTTGACTCCGGAAT
CGATAAGCAAAAATATGCTCAGACCGTCGTGTCGACGCGGATCGTCCCCGGTTGCGTGCAGTTTTGGGGGGCGAAAAAACGTTTTTACACAGCCTGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1455 bp484 aa631517+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHGFVQGADRQQTTLFPECLDDWVDESNSIRAVDVFVDALELRDLGFDGVDPAATGRPAYHPSPMLKLYIYGYLNRVQSSRRLEREAGRNLEVMWLTGRL
APDHKTIADFRKDNGPAIKKVCAQFVELCRKMGLLTKASVAIDGSKFKAVNSRDNNFTQGKIQRRQKQIEESVARYMSQLDTADRQTAAGEEPSETVLLT
KTRLKEKLAKLEEEVKRLAAIEKALLASPDRQISLTDPDCRSMATSGRGSGMVAYNVQSAVDTTNHLIVAHEVTNVGTDRSQLATMAQAAKAALRSDHLD
VVADRGYFKGEELLACEQAGVAVTLPKPQTSGAKSAGRFGKPDFVYLAKDDVYRCPAGEKLAHHFTADEDGQKMRIYLTKACRTCPFKDQCTTSNERRIK
RWEHEHVVEAAQTRLDQNPQAMRVRRETVEHPFATLKMRMGATHFLMKRLPNVATEMALNVLAYNLTRVMNIVGIKPLLVAIRA

 

Blast result :
Comments
ISBdi4 is 76% aa similar to ISPpu16
References
1] Gesiele Carvalho (2018) Direct submission.