ISBdi3

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens SEMIA 5080
Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens USDA 122
DNA section
IS Length : 1654 bp

Ends


IR Length : 20/24

IRL : GGCTCTGATTCACTTTTGATGCAGTTTGGGGGATGCGTGGCGCTTTGATT
IRR : GGCTCTGACGCAGTTTTGGTGCAGCTGGGTTTATTCTGCGCCGATTAGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGCCTGTAAATTTTGCAGACGAT5

DNA sequence

GGCTCTGATTCACTTTTGATGCAGTTTGGGGGATGCGTGGCGCTTTGATTGGAGGAGAATCAACGCCATGCAGCAAGCACTCCACCGCTCCAGTCTGGTG
CCGCGTGGGTTTGTTGTAGAGAGTGCGTACTACGAAGGTGATAAGGCCGTGATTGAGATCCGGGCGTCCGGAAGCGTCGGTCTGTGTCCCTTGTGCGGAA
CAGTTTCTCGGCGTGTCCATAGCCGGTATCGGCGACGCGTGACTGACCTCCCGCTTTCGGGGCGGATCGTACAGCTCCTGGTGGTCGCCCGCCGCTTCCG
CTGCGACGCCGTCCTGTGCGGGCGCCAAATCTTTACTGAGCGCTTCGACGAAGGGGTGCCGGCTCCATCAGCGCGACGCACGGCGAGGCTGGACTCCATT
GTCCATCACCTCGGTCTGGCTCTTGGCGGACGACCGGCGGCAGGCTTCGCAAAACGGCTGATGCTGCCGGTGAGCAAGGATACGCTCCTTCGCGTGGTTC
GACGCCGTAGCCGTCCGCCGGCTGACCCGCTCAGGATTATCGGCATTGATGATTGGGCCTGGCGGCGCAATCACCGATACGCCAGCATCATCTGCAACCT
GGAAAGGCGCCGGGTGGTCACCCTGCTGCCGGACCGTGAGCCCTCGACCGCCCAAGCCTGGCTCGCCGCCCATCCCACGATCGCGATCGTCGCCCGCGAC
CGCGGCGGAGGATATGGCGAAGCCGCAGCAAAGGCCCTGCCGCACGCGGTACAGGTCGCAGATCGTTGGCATTTGATGGAGAACGCCAGCCGGGCCTACC
TCGATGCCGTCCGAAAATCGATGCGCCAGATCCGCAGCGCAATCGGAGCAACTACGATCAATCCCGAGCTGCTAACAGCTGCGGAGCGTCTCCAATATGA
GGGCTATCTCCGGCGCGAGGAGGCTAACGCGACCATCTTGAGCCTGTCGAAAGGTGGGACGCCGATCAAGCAGATAGTGCGCCAGACGGGCCACAGCAGG
GGGCTGGTGCGACAGGTGATCCGCGGCGAACGCCATGATGTCTTCCGGACCCGGGAGAGCTCTCTCGATCAGCACCTGCCATGGCTCGACGACCAATGGG
CAGCCGGTTGCCGAAACGGCGCTGAACTTTGGCGCCGCTTACGGGCGCGCGGTTTCCGAGGCTCCCTTCGTGTTGTCGGCGAGTGGACGACTCGTAGACG
GCGGGCCGAAAAGACTGATGTCGAAACCCTTCATCGGATTCCATCGGCCAGAACGATCGCTCGTCTCATGACCGTCGGACGGGATACGCTATCGAAGGCA
GAGACGGTGACCGTCGCTGCGGTAGAAGCTGGCGTGCCACCCCTGGTCGAGGCACGCGAGATCATCGCCGAATTCCACCTGATGATCCGACGCAAGACCG
AGGCGGGCCTCGTCCCATGGATCGAGCGCGCTCGCGCCAGTCTTGTTGCATCGTTCGCCCGCGGCGTAACGAACGATGAAGCGGCGGTTCGGGCGGCGAT
CACCTCGCCCTGGTCCAACGGACAGACTGAGGGGCAGATCACGCGCCTCAAGCTCGTCAGACGCCAAATGTACGGCCGTGGCAAAATCGATCTGCTTCAA
GCCAGACTAATCGGCGCAGAATAAACCCAGCTGCACCAAAACTGCGTCAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1557 bp518 aa681624+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MQQALHRSSLVPRGFVVESAYYEGDKAVIEIRASGSVGLCPLCGTVSRRVHSRYRRRVTDLPLSGRIVQLLVVARRFRCDAVLCGRQIFTERFDEGVPAP
SARRTARLDSIVHHLGLALGGRPAAGFAKRLMLPVSKDTLLRVVRRRSRPPADPLRIIGIDDWAWRRNHRYASIICNLERRRVVTLLPDREPSTAQAWLA
AHPTIAIVARDRGGGYGEAAAKALPHAVQVADRWHLMENASRAYLDAVRKSMRQIRSAIGATTINPELLTAAERLQYEGYLRREEANATILSLSKGGTPI
KQIVRQTGHSRGLVRQVIRGERHDVFRTRESSLDQHLPWLDDQWAAGCRNGAELWRRLRARGFRGSLRVVGEWTTRRRRAEKTDVETLHRIPSARTIARL
MTVGRDTLSKAETVTVAAVEAGVPPLVEAREIIAEFHLMIRRKTEAGLVPWIERARASLVASFARGVTNDEAAVRAAITSPWSNGQTEGQITRLKLVRRQ
MYGRGKIDLLQARLIGAE

 

Blast result :
Comments
ISBdi3 is 78% aa similar to ISMex24.
References
1] Gesiele Carvalho (2018) Direct submission.