ISBdi3
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 122 |
DNA section
IS Length : 1654 bp
Ends
IR Length : 20/24
IRL : GGCTCTGATTCACTTTTGATGCAGTTTGGGGGATGCGTGGCGCTTTGATT
IRR : GGCTCTGACGCAGTTTTGGTGCAGCTGGGTTTATTCTGCGCCGATTAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGGCCTGTA | AATTT | TGCAGACGAT | 5 |
DNA sequence
GGCTCTGATTCACTTTTGATGCAGTTTGGGGGATGCGTGGCGCTTTGATTGGAGGAGAATCAACGCCATGCAGCAAGCACTCCACCGCTCCAGTCTGGTG
CCGCGTGGGTTTGTTGTAGAGAGTGCGTACTACGAAGGTGATAAGGCCGTGATTGAGATCCGGGCGTCCGGAAGCGTCGGTCTGTGTCCCTTGTGCGGAA
CAGTTTCTCGGCGTGTCCATAGCCGGTATCGGCGACGCGTGACTGACCTCCCGCTTTCGGGGCGGATCGTACAGCTCCTGGTGGTCGCCCGCCGCTTCCG
CTGCGACGCCGTCCTGTGCGGGCGCCAAATCTTTACTGAGCGCTTCGACGAAGGGGTGCCGGCTCCATCAGCGCGACGCACGGCGAGGCTGGACTCCATT
GTCCATCACCTCGGTCTGGCTCTTGGCGGACGACCGGCGGCAGGCTTCGCAAAACGGCTGATGCTGCCGGTGAGCAAGGATACGCTCCTTCGCGTGGTTC
GACGCCGTAGCCGTCCGCCGGCTGACCCGCTCAGGATTATCGGCATTGATGATTGGGCCTGGCGGCGCAATCACCGATACGCCAGCATCATCTGCAACCT
GGAAAGGCGCCGGGTGGTCACCCTGCTGCCGGACCGTGAGCCCTCGACCGCCCAAGCCTGGCTCGCCGCCCATCCCACGATCGCGATCGTCGCCCGCGAC
CGCGGCGGAGGATATGGCGAAGCCGCAGCAAAGGCCCTGCCGCACGCGGTACAGGTCGCAGATCGTTGGCATTTGATGGAGAACGCCAGCCGGGCCTACC
TCGATGCCGTCCGAAAATCGATGCGCCAGATCCGCAGCGCAATCGGAGCAACTACGATCAATCCCGAGCTGCTAACAGCTGCGGAGCGTCTCCAATATGA
GGGCTATCTCCGGCGCGAGGAGGCTAACGCGACCATCTTGAGCCTGTCGAAAGGTGGGACGCCGATCAAGCAGATAGTGCGCCAGACGGGCCACAGCAGG
GGGCTGGTGCGACAGGTGATCCGCGGCGAACGCCATGATGTCTTCCGGACCCGGGAGAGCTCTCTCGATCAGCACCTGCCATGGCTCGACGACCAATGGG
CAGCCGGTTGCCGAAACGGCGCTGAACTTTGGCGCCGCTTACGGGCGCGCGGTTTCCGAGGCTCCCTTCGTGTTGTCGGCGAGTGGACGACTCGTAGACG
GCGGGCCGAAAAGACTGATGTCGAAACCCTTCATCGGATTCCATCGGCCAGAACGATCGCTCGTCTCATGACCGTCGGACGGGATACGCTATCGAAGGCA
GAGACGGTGACCGTCGCTGCGGTAGAAGCTGGCGTGCCACCCCTGGTCGAGGCACGCGAGATCATCGCCGAATTCCACCTGATGATCCGACGCAAGACCG
AGGCGGGCCTCGTCCCATGGATCGAGCGCGCTCGCGCCAGTCTTGTTGCATCGTTCGCCCGCGGCGTAACGAACGATGAAGCGGCGGTTCGGGCGGCGAT
CACCTCGCCCTGGTCCAACGGACAGACTGAGGGGCAGATCACGCGCCTCAAGCTCGTCAGACGCCAAATGTACGGCCGTGGCAAAATCGATCTGCTTCAA
GCCAGACTAATCGGCGCAGAATAAACCCAGCTGCACCAAAACTGCGTCAGAGCC
CCGCGTGGGTTTGTTGTAGAGAGTGCGTACTACGAAGGTGATAAGGCCGTGATTGAGATCCGGGCGTCCGGAAGCGTCGGTCTGTGTCCCTTGTGCGGAA
CAGTTTCTCGGCGTGTCCATAGCCGGTATCGGCGACGCGTGACTGACCTCCCGCTTTCGGGGCGGATCGTACAGCTCCTGGTGGTCGCCCGCCGCTTCCG
CTGCGACGCCGTCCTGTGCGGGCGCCAAATCTTTACTGAGCGCTTCGACGAAGGGGTGCCGGCTCCATCAGCGCGACGCACGGCGAGGCTGGACTCCATT
GTCCATCACCTCGGTCTGGCTCTTGGCGGACGACCGGCGGCAGGCTTCGCAAAACGGCTGATGCTGCCGGTGAGCAAGGATACGCTCCTTCGCGTGGTTC
GACGCCGTAGCCGTCCGCCGGCTGACCCGCTCAGGATTATCGGCATTGATGATTGGGCCTGGCGGCGCAATCACCGATACGCCAGCATCATCTGCAACCT
GGAAAGGCGCCGGGTGGTCACCCTGCTGCCGGACCGTGAGCCCTCGACCGCCCAAGCCTGGCTCGCCGCCCATCCCACGATCGCGATCGTCGCCCGCGAC
CGCGGCGGAGGATATGGCGAAGCCGCAGCAAAGGCCCTGCCGCACGCGGTACAGGTCGCAGATCGTTGGCATTTGATGGAGAACGCCAGCCGGGCCTACC
TCGATGCCGTCCGAAAATCGATGCGCCAGATCCGCAGCGCAATCGGAGCAACTACGATCAATCCCGAGCTGCTAACAGCTGCGGAGCGTCTCCAATATGA
GGGCTATCTCCGGCGCGAGGAGGCTAACGCGACCATCTTGAGCCTGTCGAAAGGTGGGACGCCGATCAAGCAGATAGTGCGCCAGACGGGCCACAGCAGG
GGGCTGGTGCGACAGGTGATCCGCGGCGAACGCCATGATGTCTTCCGGACCCGGGAGAGCTCTCTCGATCAGCACCTGCCATGGCTCGACGACCAATGGG
CAGCCGGTTGCCGAAACGGCGCTGAACTTTGGCGCCGCTTACGGGCGCGCGGTTTCCGAGGCTCCCTTCGTGTTGTCGGCGAGTGGACGACTCGTAGACG
GCGGGCCGAAAAGACTGATGTCGAAACCCTTCATCGGATTCCATCGGCCAGAACGATCGCTCGTCTCATGACCGTCGGACGGGATACGCTATCGAAGGCA
GAGACGGTGACCGTCGCTGCGGTAGAAGCTGGCGTGCCACCCCTGGTCGAGGCACGCGAGATCATCGCCGAATTCCACCTGATGATCCGACGCAAGACCG
AGGCGGGCCTCGTCCCATGGATCGAGCGCGCTCGCGCCAGTCTTGTTGCATCGTTCGCCCGCGGCGTAACGAACGATGAAGCGGCGGTTCGGGCGGCGAT
CACCTCGCCCTGGTCCAACGGACAGACTGAGGGGCAGATCACGCGCCTCAAGCTCGTCAGACGCCAAATGTACGGCCGTGGCAAAATCGATCTGCTTCAA
GCCAGACTAATCGGCGCAGAATAAACCCAGCTGCACCAAAACTGCGTCAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1557 bp | 518 aa | 68 | 1624 | + | No |
Chemistry : Unknow
ORF sequence :
MQQALHRSSLVPRGFVVESAYYEGDKAVIEIRASGSVGLCPLCGTVSRRVHSRYRRRVTDLPLSGRIVQLLVVARRFRCDAVLCGRQIFTERFDEGVPAP
SARRTARLDSIVHHLGLALGGRPAAGFAKRLMLPVSKDTLLRVVRRRSRPPADPLRIIGIDDWAWRRNHRYASIICNLERRRVVTLLPDREPSTAQAWLA
AHPTIAIVARDRGGGYGEAAAKALPHAVQVADRWHLMENASRAYLDAVRKSMRQIRSAIGATTINPELLTAAERLQYEGYLRREEANATILSLSKGGTPI
KQIVRQTGHSRGLVRQVIRGERHDVFRTRESSLDQHLPWLDDQWAAGCRNGAELWRRLRARGFRGSLRVVGEWTTRRRRAEKTDVETLHRIPSARTIARL
MTVGRDTLSKAETVTVAAVEAGVPPLVEAREIIAEFHLMIRRKTEAGLVPWIERARASLVASFARGVTNDEAAVRAAITSPWSNGQTEGQITRLKLVRRQ
MYGRGKIDLLQARLIGAE
SARRTARLDSIVHHLGLALGGRPAAGFAKRLMLPVSKDTLLRVVRRRSRPPADPLRIIGIDDWAWRRNHRYASIICNLERRRVVTLLPDREPSTAQAWLA
AHPTIAIVARDRGGGYGEAAAKALPHAVQVADRWHLMENASRAYLDAVRKSMRQIRSAIGATTINPELLTAAERLQYEGYLRREEANATILSLSKGGTPI
KQIVRQTGHSRGLVRQVIRGERHDVFRTRESSLDQHLPWLDDQWAAGCRNGAELWRRLRARGFRGSLRVVGEWTTRRRRAEKTDVETLHRIPSARTIARL
MTVGRDTLSKAETVTVAAVEAGVPPLVEAREIIAEFHLMIRRKTEAGLVPWIERARASLVASFARGVTNDEAAVRAAITSPWSNGQTEGQITRLKLVRRQ
MYGRGKIDLLQARLIGAE
Blast result :
Comments
ISBdi3 is 78% aa similar to ISMex24.
References
1] Gesiele Carvalho (2018) Direct submission.