ISBdi1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens SEMIA 5080
DNA section
IS Length : 1301 bp

Ends


IR Length : 28

IRL : CGGTAACGTACAGAGTCTTTCGCACTTTCAGGATTGACGGCTTCCTCTAG
IRR : CGGTACTGTCCAGAATCTTTCGCACTTTTGATCAGGCGACGGCTCCGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
GCTTTGCATTCGCCAAATCCC0

DNA sequence

GGTAACGTACAGAGTCTTTCGCACTTTCAGGATTGACGGCTTCCTCTAGAATGAAGGAGCTTTGAATGAACGATGGGAATGCCATGGGTCAGGTGATCCA
AATTGATGAGGCCCGGATTCGAGATCACCTGGGCGAGATGGTCCGCGGGACGGTGGAAGAGACACTGAACGCCATGCTGGAGGCCGAAGCGGACCAGCTG
TGCGGTGCTGGGCGTTATGAGCGCAGCCCGGCCCGGCAGGACACGCGGGCAGGCAGCTACGAGCGAACGCTGCAGACCAAGGCGGGCGACGTCAATCTGA
AGGTTCCGAAGCTACGTCGGCAAACCTTCGAGACGGCGATTATCGAGCGCTACTGGAGGCGGGAGAGCTCGGTCGAGGAGGCGCTGATCGAGATGTATCT
GGCCGGGATTTCGGTTCGGCGGGTCGAAGACATCACGGAGGCGCTGTGGGGCACCCGGGTCAGCCCGAGCACAGTGTCGAACCTGAACAAGAAGATCTAT
ACCAAGATCGAGGCGCGGCGGAATCGCAGGATCGAAGGCGAGCATCCGTATCTCTACCTCGACGGCATCGTGATGAAGCGCAGCTGGGCTGGTGAGGTTC
GCAACGTGTCGCTGCTAGTGGCCTCGGCGGTCAATGCTGAGGGGTTCCGGGAGATCCTCGGCATCTGTGAGGGCGCCAAGGAGGACAAATCCGGCTGGTC
CTCGTTTCTGCGGCATCTCGTCGATCGCGGTCTCAGGGGCGTGCAGTTGGTGGTTTCCGATGCGTGCCGAGGTCTTGTCGAAAGCGTTGCGGATTATCTG
CCGGAGGCCCGCTATCAACGCTGCATGGTGCATTTTTATCGCAATGTCTTCAGCCACGTGCCGTCGACCCGGGTCCACGAGGTGAGCCACATGCTCAAGG
CCATTCATGCCCAGGAGAGCCGCGCCGCGGCCGACGAGAAAGCCAGGACCGTCATCGCGGATCTGCGGGCAAGCCGTATGGCCAAAGCTGCTGATCTCGT
CGAGCAGGCGGTTCACGAGACGCTCGCCTACTATGCCTTTCCTGACATCCATTGGCGGAAGATTCGAACGAACAATCCGCTCGAGCGCATCATGAAGGAG
ATCCGGCGACGAACCCGTGTCGTCGGCGCCTTCCCCGACGGTCAATCCTGTCTCAATTTGGCGGCGGCCCGGCTGCGGCACATTGCCGGAACGGCGTGGT
CGACCAAATGCTACATGAACATGCGACCGCTCTATCAGCCACAACTCTCTGAAACCGGAGCCGTCGCCTGATCAAAAGTGCGAAAGATTCTGGACAGTAC
C
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1206 bp401 aa661271+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNDGNAMGQVIQIDEARIRDHLGEMVRGTVEETLNAMLEAEADQLCGAGRYERSPARQDTRAGSYERTLQTKAGDVNLKVPKLRRQTFETAIIERYWRRE
SSVEEALIEMYLAGISVRRVEDITEALWGTRVSPSTVSNLNKKIYTKIEARRNRRIEGEHPYLYLDGIVMKRSWAGEVRNVSLLVASAVNAEGFREILGI
CEGAKEDKSGWSSFLRHLVDRGLRGVQLVVSDACRGLVESVADYLPEARYQRCMVHFYRNVFSHVPSTRVHEVSHMLKAIHAQESRAAADEKARTVIADL
RASRMAKAADLVEQAVHETLAYYAFPDIHWRKIRTNNPLERIMKEIRRRTRVVGAFPDGQSCLNLAAARLRHIAGTAWSTKCYMNMRPLYQPQLSETGAV
A

 

Blast result :
Comments
ISBdi1 is 75% a similar to ISCce2.
References
1] Gesiele Carvalho (2018) Direct submission.