ISBdi1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 |
DNA section
IS Length : 1301 bp
Ends
IR Length : 28
IRL : CGGTAACGTACAGAGTCTTTCGCACTTTCAGGATTGACGGCTTCCTCTAG
IRR : CGGTACTGTCCAGAATCTTTCGCACTTTTGATCAGGCGACGGCTCCGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTTTGCATTC | GCCAAATCCC | 0 |
DNA sequence
GGTAACGTACAGAGTCTTTCGCACTTTCAGGATTGACGGCTTCCTCTAGAATGAAGGAGCTTTGAATGAACGATGGGAATGCCATGGGTCAGGTGATCCA
AATTGATGAGGCCCGGATTCGAGATCACCTGGGCGAGATGGTCCGCGGGACGGTGGAAGAGACACTGAACGCCATGCTGGAGGCCGAAGCGGACCAGCTG
TGCGGTGCTGGGCGTTATGAGCGCAGCCCGGCCCGGCAGGACACGCGGGCAGGCAGCTACGAGCGAACGCTGCAGACCAAGGCGGGCGACGTCAATCTGA
AGGTTCCGAAGCTACGTCGGCAAACCTTCGAGACGGCGATTATCGAGCGCTACTGGAGGCGGGAGAGCTCGGTCGAGGAGGCGCTGATCGAGATGTATCT
GGCCGGGATTTCGGTTCGGCGGGTCGAAGACATCACGGAGGCGCTGTGGGGCACCCGGGTCAGCCCGAGCACAGTGTCGAACCTGAACAAGAAGATCTAT
ACCAAGATCGAGGCGCGGCGGAATCGCAGGATCGAAGGCGAGCATCCGTATCTCTACCTCGACGGCATCGTGATGAAGCGCAGCTGGGCTGGTGAGGTTC
GCAACGTGTCGCTGCTAGTGGCCTCGGCGGTCAATGCTGAGGGGTTCCGGGAGATCCTCGGCATCTGTGAGGGCGCCAAGGAGGACAAATCCGGCTGGTC
CTCGTTTCTGCGGCATCTCGTCGATCGCGGTCTCAGGGGCGTGCAGTTGGTGGTTTCCGATGCGTGCCGAGGTCTTGTCGAAAGCGTTGCGGATTATCTG
CCGGAGGCCCGCTATCAACGCTGCATGGTGCATTTTTATCGCAATGTCTTCAGCCACGTGCCGTCGACCCGGGTCCACGAGGTGAGCCACATGCTCAAGG
CCATTCATGCCCAGGAGAGCCGCGCCGCGGCCGACGAGAAAGCCAGGACCGTCATCGCGGATCTGCGGGCAAGCCGTATGGCCAAAGCTGCTGATCTCGT
CGAGCAGGCGGTTCACGAGACGCTCGCCTACTATGCCTTTCCTGACATCCATTGGCGGAAGATTCGAACGAACAATCCGCTCGAGCGCATCATGAAGGAG
ATCCGGCGACGAACCCGTGTCGTCGGCGCCTTCCCCGACGGTCAATCCTGTCTCAATTTGGCGGCGGCCCGGCTGCGGCACATTGCCGGAACGGCGTGGT
CGACCAAATGCTACATGAACATGCGACCGCTCTATCAGCCACAACTCTCTGAAACCGGAGCCGTCGCCTGATCAAAAGTGCGAAAGATTCTGGACAGTAC
C
AATTGATGAGGCCCGGATTCGAGATCACCTGGGCGAGATGGTCCGCGGGACGGTGGAAGAGACACTGAACGCCATGCTGGAGGCCGAAGCGGACCAGCTG
TGCGGTGCTGGGCGTTATGAGCGCAGCCCGGCCCGGCAGGACACGCGGGCAGGCAGCTACGAGCGAACGCTGCAGACCAAGGCGGGCGACGTCAATCTGA
AGGTTCCGAAGCTACGTCGGCAAACCTTCGAGACGGCGATTATCGAGCGCTACTGGAGGCGGGAGAGCTCGGTCGAGGAGGCGCTGATCGAGATGTATCT
GGCCGGGATTTCGGTTCGGCGGGTCGAAGACATCACGGAGGCGCTGTGGGGCACCCGGGTCAGCCCGAGCACAGTGTCGAACCTGAACAAGAAGATCTAT
ACCAAGATCGAGGCGCGGCGGAATCGCAGGATCGAAGGCGAGCATCCGTATCTCTACCTCGACGGCATCGTGATGAAGCGCAGCTGGGCTGGTGAGGTTC
GCAACGTGTCGCTGCTAGTGGCCTCGGCGGTCAATGCTGAGGGGTTCCGGGAGATCCTCGGCATCTGTGAGGGCGCCAAGGAGGACAAATCCGGCTGGTC
CTCGTTTCTGCGGCATCTCGTCGATCGCGGTCTCAGGGGCGTGCAGTTGGTGGTTTCCGATGCGTGCCGAGGTCTTGTCGAAAGCGTTGCGGATTATCTG
CCGGAGGCCCGCTATCAACGCTGCATGGTGCATTTTTATCGCAATGTCTTCAGCCACGTGCCGTCGACCCGGGTCCACGAGGTGAGCCACATGCTCAAGG
CCATTCATGCCCAGGAGAGCCGCGCCGCGGCCGACGAGAAAGCCAGGACCGTCATCGCGGATCTGCGGGCAAGCCGTATGGCCAAAGCTGCTGATCTCGT
CGAGCAGGCGGTTCACGAGACGCTCGCCTACTATGCCTTTCCTGACATCCATTGGCGGAAGATTCGAACGAACAATCCGCTCGAGCGCATCATGAAGGAG
ATCCGGCGACGAACCCGTGTCGTCGGCGCCTTCCCCGACGGTCAATCCTGTCTCAATTTGGCGGCGGCCCGGCTGCGGCACATTGCCGGAACGGCGTGGT
CGACCAAATGCTACATGAACATGCGACCGCTCTATCAGCCACAACTCTCTGAAACCGGAGCCGTCGCCTGATCAAAAGTGCGAAAGATTCTGGACAGTAC
C
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1206 bp | 401 aa | 66 | 1271 | + | No |
Chemistry : DDE
ORF sequence :
MNDGNAMGQVIQIDEARIRDHLGEMVRGTVEETLNAMLEAEADQLCGAGRYERSPARQDTRAGSYERTLQTKAGDVNLKVPKLRRQTFETAIIERYWRRE
SSVEEALIEMYLAGISVRRVEDITEALWGTRVSPSTVSNLNKKIYTKIEARRNRRIEGEHPYLYLDGIVMKRSWAGEVRNVSLLVASAVNAEGFREILGI
CEGAKEDKSGWSSFLRHLVDRGLRGVQLVVSDACRGLVESVADYLPEARYQRCMVHFYRNVFSHVPSTRVHEVSHMLKAIHAQESRAAADEKARTVIADL
RASRMAKAADLVEQAVHETLAYYAFPDIHWRKIRTNNPLERIMKEIRRRTRVVGAFPDGQSCLNLAAARLRHIAGTAWSTKCYMNMRPLYQPQLSETGAV
A
SSVEEALIEMYLAGISVRRVEDITEALWGTRVSPSTVSNLNKKIYTKIEARRNRRIEGEHPYLYLDGIVMKRSWAGEVRNVSLLVASAVNAEGFREILGI
CEGAKEDKSGWSSFLRHLVDRGLRGVQLVVSDACRGLVESVADYLPEARYQRCMVHFYRNVFSHVPSTRVHEVSHMLKAIHAQESRAAADEKARTVIADL
RASRMAKAADLVEQAVHETLAYYAFPDIHWRKIRTNNPLERIMKEIRRRTRVVGAFPDGQSCLNLAAARLRHIAGTAWSTKCYMNMRPLYQPQLSETGAV
A
Blast result :
Comments
ISBdi1 is 75% a similar to ISCce2.
References
1] Gesiele Carvalho (2018) Direct submission.