ISTeha4

  • Family IS4
  • Group ISPepr1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LC430898 Y Tetragenococcus halophilus
Tetragenococcus halophilus NBRC 12172
Tetragenococcus halophilus
Tetragenococcus halophilus KUD23
Tetragenococcus halophilus plasmid pTDC-B
Tetragenococcus halophilus plasmid pTDC-A
Tetragenococcus halophilus plasmid pHDC-RI
DNA section
IS Length : 1567 bp

Ends


IR Length : 13

IRL : CTAAAACTTGAAAGTTCAAAAATACAGTTCATCCCTTGATAAATAAACGT
IRR : CTAAAACTTGAAACCTACTTTTCGATACGTATCCCTTGGTATACCAAGGA

Insertion site


Left flankDirect repeatRight flankDR Length
CAACATAAGGATAATAAATTATCCAAT7
TTAGGTATACTAACAATAATACTAAATGG9
CAAAAATTTAGCTTAGACATTACTTATGAAGAGCAAAAAG0

DNA sequence

CTAAAACTTGAAAGTTCAAAAATACAGTTCATCCCTTGATAAATAAACGTTTTTTGATACAAAAATAGCATGAACGACTCAAAACTTGGTATAATAGAAT
TACCAAAAAACCAATAACCAAGGAGTGTTCATGCCATGTCAATTATAACACAAAAAACGTCAAATTCAGAAAAAATTTCTACCTCTGTGTCTGATTTTTT
TCATCGGTTCCATGTAGCTTCTGCGTTGAAAAAATCAAACGCAGTCCATAAAAGGGGTTTTTCGGTTCCTGTTATTTTTTCTTTTTTATTGGCCTCGATC
TTTACCAACGGTTCTACCTATCGGTTTTACCAAAAGCAGAAGGAACAATTGTCTTTTTCGGATAAGACCTTTCGCAATGTCTTGAATGATCCGCACATTC
ATTGGCAAAAATTACTGATCTTAGTGGCTAAATCTGTCATTACTTTCCTACGTCCATTGACGGGTGATGCCCGAAAAACCACATTTATCGTGGATGACTC
CATGTATACCCGCTCGAATGCGAAAAAAGTGGAATGTGCCGCTTTACAATACGACCATGCCAAGAAAAAATATTTCAAAGGATTTCGTTATTTACAATTA
GGCTGGAGTGATGGCAATAGCTTTGTCCCTGTTGCTTTTTCGTTGCTCTCCGGGAAAAGAAAGCTCCAATCTGATCTTGATATCGGGGATCAACGCACGA
ATAGGGGGAAACGTAAAGCTCAAGCGCTTCGTAAAGGCACGGAAGTGACACTGGAACTGCTTCGATCGGCTTTGAACCAAGGGATCTCTGCAGATTATGT
TTTATTTGACACCTGGTTTTCCAGTCCCAAAATGTTCCAACAGGTCCGTGACCTGAAATGCCACTGCGTAGCGATGGTTAAACGTAGTCAAAAGATCTAC
TATCGTTATCAAGGCCAAAAGATGGATGTCAAAGAAATCTTCAAACGAAATAAAAAGCGCCGCGGTCGTTCTCGCTATCTTTTGAGTGTCCAAGTAGAAG
CTGTCGTAGAAGGGAAAATCCTTCCCATTAAGTTGGTATATATTCGCAATCGCAATAAACGAAACGACTATTTGGTCTTAGCTTCGACCGATATCGATCT
GACCGAAGACGAGATCATTCAGCTCTATGCTAGACGCTGGTCGGTGGAAGTCTACTTCAAGATGTGCAAACAATACTTAAAATTAGCCAAGTACCAAGGG
ATTTCTTATGACGGGATCTTTGCGCATACGACACTGGTAGCTATCGGTTATATGATCCTAGCGGTGCAAGAACGTGAAAGTAAAGACGACCGAACGCTTG
GCGAGTTATTTTATCTTCTCATTGATGAGCTTTCTGAGCTTTCTGTATCGGAAGCCATTCTGCAATTACTCGTTTTATTCCAAGAAGCTTTTGCGGATGA
ATATGTTTTGGATGAAGCCGTATTAAATAACATTATCGAACAGTTCCTTGAAAAACTACCTTCCTCTATACAAAAACAGCTCAAGCAAGCAGGTTGAAGT
TAATTTTGTGCATGAGATCCTTGGTATACCAAGGGATACGTATCGAAAAGTAGGTTTCAAGTTTTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1362 bp453 aa1361497+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSIITQKTSNSEKISTSVSDFFHRFHVASALKKSNAVHKRGFSVPVIFSFLLASIFTNGSTYRFYQKQKEQLSFSDKTFRNVLNDPHIHWQKLLILVAKS
VITFLRPLTGDARKTTFIVDDSMYTRSNAKKVECAALQYDHAKKKYFKGFRYLQLGWSDGNSFVPVAFSLLSGKRKLQSDLDIGDQRTNRGKRKAQALRK
GTEVTLELLRSALNQGISADYVLFDTWFSSPKMFQQVRDLKCHCVAMVKRSQKIYYRYQGQKMDVKEIFKRNKKRRGRSRYLLSVQVEAVVEGKILPIKL
VYIRNRNKRNDYLVLASTDIDLTEDEIIQLYARRWSVEVYFKMCKQYLKLAKYQGISYDGIFAHTTLVAIGYMILAVQERESKDDRTLGELFYLLIDELS
ELSVSEAILQLLVLFQEAFADEYVLDEAVLNNIIEQFLEKLPSSIQKQLKQAG

 

Blast result :
Comments
ISTeha4 is 61% aa similar to ISLre1.
Additionnal accession number : LC430900.
References
1] Takura Wakinaka (2018) Direct submission.
2] Wakinaka, T., & Watanabe, J. (2019) Appl. Environ. Microbiol 2;85(10)