ISTeha3

  • Family IS4
  • Group ISPepr1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LC430896 Y Tetragenococcus halophilus
Tetragenococcus halophilus NBRC 12172
Tetragenococcus halophilus
Tetragenococcus halophilus KUD23
Tetragenococcus halophilus MJ4
DNA section
IS Length : 1522 bp

Ends


IR Length : 18/20

IRL : CTCAAGTTTCGCACATAAAAAAATAGGATAATCCATTGCCAGATCTGGGC
IRR : CTCAAGTTTCGCACACCAAATTCGGTAGATAACCCTTGATATAGTTGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGGAAAACTACTAAACGAAGAAAA7

DNA sequence

CTCAAGTTTCGCACATAAAAAAATAGGATAATCCATTGCCAGATCTGGGCCTGCATTGAATTCAATCGCCTTCTTGACTTTTTTAACAAAAGATACAAAA
AGAACTCGCTTTGTTTTATAATTGATTTACCACAAATCAAAGACAAAGGAGTTCTTGCCCTTATGATACACTTAAAAGCCATCAAAAATCAATTACCAAA
TGAAGTAAAAGCGACTTTTTCCGAATTAAAGGTGCCTTCCTTTTTGCGTCAAGCTCACATCCACAAGCAAAAAGGCTATTCCGTCGCAGTCATCTTTACT
TTTCTTTTTTCTTTAGTCTTTAAAGGCAAATCGCTTCATCAAGTCCTTTCTGGACGTGAGGCGGACCAATGGATGAAAAAAGATACGGTCTATCGTTTGA
TGAACGATCCTCACAATAACTGGCGGACCTTTCTTCTTCGTTTCAGTACTTCGGTGATCGAAAAGATCCATCGTCTGACGGATCCTCAAACTCATCTACG
CACCTTGATTTTAGACGATTCTACCTTTTATCGAAATCGGAGTCAAAAAGTCCCTGGTTTAGCCCGTCTATGGGATCATGCCTTGCAAAAAGGCTACAAA
GGATATCGTATGCTCACGTTGGGCTTTTCCGATGGGTATTCGTTTCTGCCTATTGATTTTAGTTTGCTTTCTGGCAATAAAAAAGTCCAGCCCACCATCT
CTGTACAAGACCAGCGAACCGTGGGCGCTCGTCGATTCAAAGAAGCGCAGCGTCCCATGCCTGAAGTGGCGGTTGAAATGGTGGCACGTGCCCTTGATCA
GGGCATTTATGCCACGCATGTGCTCATGGACAAGTGGTTTACTTGTCCGAAAATGATCGATCGGTTACACGATTTAGGCATTCATACGATAGGGATGATG
AAAAACGGAAAAACAAAATATCTCTACCAAGGGCGTTTTTATAAATTAAGCGAACTCTACCAAAAATCGACGGAAGAAGTAACTGCTGAAGCTATTCTTT
CGTCCATTATCGTCCAGCCCTGTGCTGGTCAGCATCCTGTGAAGATCGTTTTTGTGAAAAACCACAGTAAACAAAGTGCCTGGTTAGCCATTATGACGGA
TGATCTGACGCTGTCTTCTCAAGAGATCGTCAAAACCTATTCTTTACGGTGGGATATCGAAACATTCTTTAAAGCATCAAAATCACTGCTTCATTTAGCG
CAAGAAACACAGACACGTAATTATCAAGCCCTGCTCTGTCACACGACCATTGTATTTACCCGTTATATTCTCTTGAGCTGGCAACAACGCTGTGCCAATG
ACGAGCGGACACTGGGCGGCTTATTTTATGAACTCGCAGATCAGATGAAAGAACTTGATTGGTCTGTGGCATTGCTTGAGTTGGTCAAGATCATTCAGGC
TGTCAGCGAAAAAGCAGAAAGTACACTACAAGACTTTATTGAAAGTCAACTACAACACTGGATCGATACGCTACCCAACTATATCAAGGGTTATCTACCG
AATTTGGTGTGCGAAACTTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa1631521+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIHLKAIKNQLPNEVKATFSELKVPSFLRQAHIHKQKGYSVAVIFTFLFSLVFKGKSLHQVLSGREADQWMKKDTVYRLMNDPHNNWRTFLLRFSTSVIE
KIHRLTDPQTHLRTLILDDSTFYRNRSQKVPGLARLWDHALQKGYKGYRMLTLGFSDGYSFLPIDFSLLSGNKKVQPTISVQDQRTVGARRFKEAQRPMP
EVAVEMVARALDQGIYATHVLMDKWFTCPKMIDRLHDLGIHTIGMMKNGKTKYLYQGRFYKLSELYQKSTEEVTAEAILSSIIVQPCAGQHPVKIVFVKN
HSKQSAWLAIMTDDLTLSSQEIVKTYSLRWDIETFFKASKSLLHLAQETQTRNYQALLCHTTIVFTRYILLSWQQRCANDERTLGGLFYELADQMKELDW
SVALLELVKIIQAVSEKAESTLQDFIESQLQHWIDTLPNYIKGYLPNLVCET

 

Blast result :
Comments
ISTeha3 is 61% aa similar to ISDha5.
Additionnal accession number : LC430899.
References
1] Takura Wakinaka (2018) Direct submission.
2] Wakinaka, T., & Watanabe, J. (2019) Appl. Environ. Microbiol 2;85(10)