ISTeha3
- Family IS4
- Group ISPepr1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LC430896 | Y | Tetragenococcus halophilus | Tetragenococcus halophilus NBRC 12172 Tetragenococcus halophilus Tetragenococcus halophilus KUD23 Tetragenococcus halophilus MJ4 |
DNA section
IS Length : 1522 bp
Ends
IR Length : 18/20
IRL : CTCAAGTTTCGCACATAAAAAAATAGGATAATCCATTGCCAGATCTGGGC
IRR : CTCAAGTTTCGCACACCAAATTCGGTAGATAACCCTTGATATAGTTGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTGGAAAA | CTACTAA | ACGAAGAAAA | 7 |
DNA sequence
CTCAAGTTTCGCACATAAAAAAATAGGATAATCCATTGCCAGATCTGGGCCTGCATTGAATTCAATCGCCTTCTTGACTTTTTTAACAAAAGATACAAAA
AGAACTCGCTTTGTTTTATAATTGATTTACCACAAATCAAAGACAAAGGAGTTCTTGCCCTTATGATACACTTAAAAGCCATCAAAAATCAATTACCAAA
TGAAGTAAAAGCGACTTTTTCCGAATTAAAGGTGCCTTCCTTTTTGCGTCAAGCTCACATCCACAAGCAAAAAGGCTATTCCGTCGCAGTCATCTTTACT
TTTCTTTTTTCTTTAGTCTTTAAAGGCAAATCGCTTCATCAAGTCCTTTCTGGACGTGAGGCGGACCAATGGATGAAAAAAGATACGGTCTATCGTTTGA
TGAACGATCCTCACAATAACTGGCGGACCTTTCTTCTTCGTTTCAGTACTTCGGTGATCGAAAAGATCCATCGTCTGACGGATCCTCAAACTCATCTACG
CACCTTGATTTTAGACGATTCTACCTTTTATCGAAATCGGAGTCAAAAAGTCCCTGGTTTAGCCCGTCTATGGGATCATGCCTTGCAAAAAGGCTACAAA
GGATATCGTATGCTCACGTTGGGCTTTTCCGATGGGTATTCGTTTCTGCCTATTGATTTTAGTTTGCTTTCTGGCAATAAAAAAGTCCAGCCCACCATCT
CTGTACAAGACCAGCGAACCGTGGGCGCTCGTCGATTCAAAGAAGCGCAGCGTCCCATGCCTGAAGTGGCGGTTGAAATGGTGGCACGTGCCCTTGATCA
GGGCATTTATGCCACGCATGTGCTCATGGACAAGTGGTTTACTTGTCCGAAAATGATCGATCGGTTACACGATTTAGGCATTCATACGATAGGGATGATG
AAAAACGGAAAAACAAAATATCTCTACCAAGGGCGTTTTTATAAATTAAGCGAACTCTACCAAAAATCGACGGAAGAAGTAACTGCTGAAGCTATTCTTT
CGTCCATTATCGTCCAGCCCTGTGCTGGTCAGCATCCTGTGAAGATCGTTTTTGTGAAAAACCACAGTAAACAAAGTGCCTGGTTAGCCATTATGACGGA
TGATCTGACGCTGTCTTCTCAAGAGATCGTCAAAACCTATTCTTTACGGTGGGATATCGAAACATTCTTTAAAGCATCAAAATCACTGCTTCATTTAGCG
CAAGAAACACAGACACGTAATTATCAAGCCCTGCTCTGTCACACGACCATTGTATTTACCCGTTATATTCTCTTGAGCTGGCAACAACGCTGTGCCAATG
ACGAGCGGACACTGGGCGGCTTATTTTATGAACTCGCAGATCAGATGAAAGAACTTGATTGGTCTGTGGCATTGCTTGAGTTGGTCAAGATCATTCAGGC
TGTCAGCGAAAAAGCAGAAAGTACACTACAAGACTTTATTGAAAGTCAACTACAACACTGGATCGATACGCTACCCAACTATATCAAGGGTTATCTACCG
AATTTGGTGTGCGAAACTTGAG
AGAACTCGCTTTGTTTTATAATTGATTTACCACAAATCAAAGACAAAGGAGTTCTTGCCCTTATGATACACTTAAAAGCCATCAAAAATCAATTACCAAA
TGAAGTAAAAGCGACTTTTTCCGAATTAAAGGTGCCTTCCTTTTTGCGTCAAGCTCACATCCACAAGCAAAAAGGCTATTCCGTCGCAGTCATCTTTACT
TTTCTTTTTTCTTTAGTCTTTAAAGGCAAATCGCTTCATCAAGTCCTTTCTGGACGTGAGGCGGACCAATGGATGAAAAAAGATACGGTCTATCGTTTGA
TGAACGATCCTCACAATAACTGGCGGACCTTTCTTCTTCGTTTCAGTACTTCGGTGATCGAAAAGATCCATCGTCTGACGGATCCTCAAACTCATCTACG
CACCTTGATTTTAGACGATTCTACCTTTTATCGAAATCGGAGTCAAAAAGTCCCTGGTTTAGCCCGTCTATGGGATCATGCCTTGCAAAAAGGCTACAAA
GGATATCGTATGCTCACGTTGGGCTTTTCCGATGGGTATTCGTTTCTGCCTATTGATTTTAGTTTGCTTTCTGGCAATAAAAAAGTCCAGCCCACCATCT
CTGTACAAGACCAGCGAACCGTGGGCGCTCGTCGATTCAAAGAAGCGCAGCGTCCCATGCCTGAAGTGGCGGTTGAAATGGTGGCACGTGCCCTTGATCA
GGGCATTTATGCCACGCATGTGCTCATGGACAAGTGGTTTACTTGTCCGAAAATGATCGATCGGTTACACGATTTAGGCATTCATACGATAGGGATGATG
AAAAACGGAAAAACAAAATATCTCTACCAAGGGCGTTTTTATAAATTAAGCGAACTCTACCAAAAATCGACGGAAGAAGTAACTGCTGAAGCTATTCTTT
CGTCCATTATCGTCCAGCCCTGTGCTGGTCAGCATCCTGTGAAGATCGTTTTTGTGAAAAACCACAGTAAACAAAGTGCCTGGTTAGCCATTATGACGGA
TGATCTGACGCTGTCTTCTCAAGAGATCGTCAAAACCTATTCTTTACGGTGGGATATCGAAACATTCTTTAAAGCATCAAAATCACTGCTTCATTTAGCG
CAAGAAACACAGACACGTAATTATCAAGCCCTGCTCTGTCACACGACCATTGTATTTACCCGTTATATTCTCTTGAGCTGGCAACAACGCTGTGCCAATG
ACGAGCGGACACTGGGCGGCTTATTTTATGAACTCGCAGATCAGATGAAAGAACTTGATTGGTCTGTGGCATTGCTTGAGTTGGTCAAGATCATTCAGGC
TGTCAGCGAAAAAGCAGAAAGTACACTACAAGACTTTATTGAAAGTCAACTACAACACTGGATCGATACGCTACCCAACTATATCAAGGGTTATCTACCG
AATTTGGTGTGCGAAACTTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 163 | 1521 | + | No |
Chemistry : DDE
ORF sequence :
MIHLKAIKNQLPNEVKATFSELKVPSFLRQAHIHKQKGYSVAVIFTFLFSLVFKGKSLHQVLSGREADQWMKKDTVYRLMNDPHNNWRTFLLRFSTSVIE
KIHRLTDPQTHLRTLILDDSTFYRNRSQKVPGLARLWDHALQKGYKGYRMLTLGFSDGYSFLPIDFSLLSGNKKVQPTISVQDQRTVGARRFKEAQRPMP
EVAVEMVARALDQGIYATHVLMDKWFTCPKMIDRLHDLGIHTIGMMKNGKTKYLYQGRFYKLSELYQKSTEEVTAEAILSSIIVQPCAGQHPVKIVFVKN
HSKQSAWLAIMTDDLTLSSQEIVKTYSLRWDIETFFKASKSLLHLAQETQTRNYQALLCHTTIVFTRYILLSWQQRCANDERTLGGLFYELADQMKELDW
SVALLELVKIIQAVSEKAESTLQDFIESQLQHWIDTLPNYIKGYLPNLVCET
KIHRLTDPQTHLRTLILDDSTFYRNRSQKVPGLARLWDHALQKGYKGYRMLTLGFSDGYSFLPIDFSLLSGNKKVQPTISVQDQRTVGARRFKEAQRPMP
EVAVEMVARALDQGIYATHVLMDKWFTCPKMIDRLHDLGIHTIGMMKNGKTKYLYQGRFYKLSELYQKSTEEVTAEAILSSIIVQPCAGQHPVKIVFVKN
HSKQSAWLAIMTDDLTLSSQEIVKTYSLRWDIETFFKASKSLLHLAQETQTRNYQALLCHTTIVFTRYILLSWQQRCANDERTLGGLFYELADQMKELDW
SVALLELVKIIQAVSEKAESTLQDFIESQLQHWIDTLPNYIKGYLPNLVCET
Blast result :
Comments
ISTeha3 is 61% aa similar to ISDha5.
Additionnal accession number : LC430899.
Additionnal accession number : LC430899.
References
1] Takura Wakinaka (2018) Direct submission.
2] Wakinaka, T., & Watanabe, J. (2019) Appl. Environ. Microbiol 2;85(10)
2] Wakinaka, T., & Watanabe, J. (2019) Appl. Environ. Microbiol 2;85(10)