ISCfr27
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP022152 | ND | Citrobacter freundii | Citrobacter freundii 705SK3 plasmid p705SK3_1 |
DNA section
IS Length : 1096 bp
Ends
IR Length : 19/34
IRL : TACCCGTGATCATTGAAGACGCTTGATTTTTCAGCAACAGGAGATCATGC
IRR : TACCCAATAAACCTCAAGATGCAGGTTTGAGCACCTGAAAATGATCGTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTAACTATA | TA | AATTGATTAT | 2 |
DNA sequence
TACCCGTGATCATTGAAGACGCTTGATTTTTCAGCAACAGGAGATCATGCTGTCCCCATGAAAATCTTTATCACTGACCAACAAAAAGCTGAACTTGAGC
GTCTTCATGACTCCAGTCGTGATAAGCGCGTTTGCGATCGCATTAAAGCCATTCTTCTGGCCTCCGAGGGCTGGAGTTCGGCCATGATCGCTCAGGCTTT
ACGCCTGCATCAGACTACTGTTGACCACCATATCAGCGAGTTTCTGAACAAAGGCAAGCTGAAGCCCGAAAATGGCGGCTCAGACAGCAAACTCAGCGCT
GAACAAACGGCTTTTTTAATCAGCCACTTATCCGACAATTTATTTTACCATACCCGTGATATTGTCGCGTTTGTCGCGCGGACATGGAACATCGTTTTCA
GCATTCCGGGAATGAATAAGTGGCTGCACCGGAACGGCTTCACCTATAAAAAACCGTCAGGCGTCCCGCATAAATTCAGTGAAGAGAAACAAAAGCAATT
CATTGAATATTATGAGGAACTCAAAGCCACCGCAGGTGATGAACCGGTTCTTTTTATTGATGCTGTCCATCCGACTCAGGCCACCAAAATAGGTTATGGC
TGGATACGTAAAGGCCAGAGAAAAGCGGTAAAAACAACAGGTAGTCGTACACGGCTGAATATCATGGGGGCGCTGAATCTGAAGGCCCCGGAACATCCGC
TAATCTGCGAATATAAAACGGTTAATGAATACAACGTATCTCGTTTTTTCAATGAGATACGTAAAATTTATCCAGATTATCAGCAGAAAGTTCATGTTAT
TCTGGATGGTGCTGGTTATCACCGTTCACAGTTAGTGAAAGACTGGGCGGAGGTGGTAAATATAAAACTTCATTACCTCCCGCCGTACAGCCCGAACCTG
AATCCGATAGAACGAATGTGGAAGTTAATGAACGAACATGCCCGGAATAACCGCTACTTCAGCAACAGCAGGGAGTTCAGGGATGCAATATCTGAATTTT
TCAGCCATACGTTACCGGGGATAGCGGGTTTTCTGACGTCCCGAATTAACGATCATTTTCAGGTGCTCAAACCTGCATCTTGAGGTTTATTGGGTA
GTCTTCATGACTCCAGTCGTGATAAGCGCGTTTGCGATCGCATTAAAGCCATTCTTCTGGCCTCCGAGGGCTGGAGTTCGGCCATGATCGCTCAGGCTTT
ACGCCTGCATCAGACTACTGTTGACCACCATATCAGCGAGTTTCTGAACAAAGGCAAGCTGAAGCCCGAAAATGGCGGCTCAGACAGCAAACTCAGCGCT
GAACAAACGGCTTTTTTAATCAGCCACTTATCCGACAATTTATTTTACCATACCCGTGATATTGTCGCGTTTGTCGCGCGGACATGGAACATCGTTTTCA
GCATTCCGGGAATGAATAAGTGGCTGCACCGGAACGGCTTCACCTATAAAAAACCGTCAGGCGTCCCGCATAAATTCAGTGAAGAGAAACAAAAGCAATT
CATTGAATATTATGAGGAACTCAAAGCCACCGCAGGTGATGAACCGGTTCTTTTTATTGATGCTGTCCATCCGACTCAGGCCACCAAAATAGGTTATGGC
TGGATACGTAAAGGCCAGAGAAAAGCGGTAAAAACAACAGGTAGTCGTACACGGCTGAATATCATGGGGGCGCTGAATCTGAAGGCCCCGGAACATCCGC
TAATCTGCGAATATAAAACGGTTAATGAATACAACGTATCTCGTTTTTTCAATGAGATACGTAAAATTTATCCAGATTATCAGCAGAAAGTTCATGTTAT
TCTGGATGGTGCTGGTTATCACCGTTCACAGTTAGTGAAAGACTGGGCGGAGGTGGTAAATATAAAACTTCATTACCTCCCGCCGTACAGCCCGAACCTG
AATCCGATAGAACGAATGTGGAAGTTAATGAACGAACATGCCCGGAATAACCGCTACTTCAGCAACAGCAGGGAGTTCAGGGATGCAATATCTGAATTTT
TCAGCCATACGTTACCGGGGATAGCGGGTTTTCTGACGTCCCGAATTAACGATCATTTTCAGGTGCTCAAACCTGCATCTTGAGGTTTATTGGGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 58 | 1083 | + | No |
Chemistry : DDE
ORF sequence :
ATGAAAATCTTTATCACTGACCAACAAAAAGCTGAACTTGAGCGTCTTCATGACTCCAGTCGTGATAAGCGCGTTTGCGATCGCATTAAAGCCATTCTTC
TGGCCTCCGAGGGCTGGAGTTCGGCCATGATCGCTCAGGCTTTACGCCTGCATCAGACTACTGTTGACCACCATATCAGCGAGTTTCTGAACAAAGGCAA
GCTGAAGCCCGAAAATGGCGGCTCAGACAGCAAACTCAGCGCTGAACAAACGGCTTTTTTAATCAGCCACTTATCCGACAATTTATTTTACCATACCCGT
GATATTGTCGCGTTTGTCGCGCGGACATGGAACATCGTTTTCAGCATTCCGGGAATGAATAAGTGGCTGCACCGGAACGGCTTCACCTATAAAAAACCGT
CAGGCGTCCCGCATAAATTCAGTGAAGAGAAACAAAAGCAATTCATTGAATATTATGAGGAACTCAAAGCCACCGCAGGTGATGAACCGGTTCTTTTTAT
TGATGCTGTCCATCCGACTCAGGCCACCAAAATAGGTTATGGCTGGATACGTAAAGGCCAGAGAAAAGCGGTAAAAACAACAGGTAGTCGTACACGGCTG
AATATCATGGGGGCGCTGAATCTGAAGGCCCCGGAACATCCGCTAATCTGCGAATATAAAACGGTTAATGAATACAACGTATCTCGTTTTTTCAATGAGA
TACGTAAAATTTATCCAGATTATCAGCAGAAAGTTCATGTTATTCTGGATGGTGCTGGTTATCACCGTTCACAGTTAGTGAAAGACTGGGCGGAGGTGGT
AAATATAAAACTTCATTACCTCCCGCCGTACAGCCCGAACCTGAATCCGATAGAACGAATGTGGAAGTTAATGAACGAACATGCCCGGAATAACCGCTAC
TTCAGCAACAGCAGGGAGTTCAGGGATGCAATATCTGAATTTTTCAGCCATACGTTACCGGGGATAGCGGGTTTTCTGACGTCCCGAATTAACGATCATT
TTCAGGTGCTCAAACCTGCATCTTGA
TGGCCTCCGAGGGCTGGAGTTCGGCCATGATCGCTCAGGCTTTACGCCTGCATCAGACTACTGTTGACCACCATATCAGCGAGTTTCTGAACAAAGGCAA
GCTGAAGCCCGAAAATGGCGGCTCAGACAGCAAACTCAGCGCTGAACAAACGGCTTTTTTAATCAGCCACTTATCCGACAATTTATTTTACCATACCCGT
GATATTGTCGCGTTTGTCGCGCGGACATGGAACATCGTTTTCAGCATTCCGGGAATGAATAAGTGGCTGCACCGGAACGGCTTCACCTATAAAAAACCGT
CAGGCGTCCCGCATAAATTCAGTGAAGAGAAACAAAAGCAATTCATTGAATATTATGAGGAACTCAAAGCCACCGCAGGTGATGAACCGGTTCTTTTTAT
TGATGCTGTCCATCCGACTCAGGCCACCAAAATAGGTTATGGCTGGATACGTAAAGGCCAGAGAAAAGCGGTAAAAACAACAGGTAGTCGTACACGGCTG
AATATCATGGGGGCGCTGAATCTGAAGGCCCCGGAACATCCGCTAATCTGCGAATATAAAACGGTTAATGAATACAACGTATCTCGTTTTTTCAATGAGA
TACGTAAAATTTATCCAGATTATCAGCAGAAAGTTCATGTTATTCTGGATGGTGCTGGTTATCACCGTTCACAGTTAGTGAAAGACTGGGCGGAGGTGGT
AAATATAAAACTTCATTACCTCCCGCCGTACAGCCCGAACCTGAATCCGATAGAACGAATGTGGAAGTTAATGAACGAACATGCCCGGAATAACCGCTAC
TTCAGCAACAGCAGGGAGTTCAGGGATGCAATATCTGAATTTTTCAGCCATACGTTACCGGGGATAGCGGGTTTTCTGACGTCCCGAATTAACGATCATT
TTCAGGTGCTCAAACCTGCATCTTGA
Blast result :
Comments
ISCfr27 is 94% aa similar to ISEc40.
References
1] Manli Li (2018) Direct submission.
2] Li,M., Li,F., Pei,G. and Tong,Y. (2018) Direct GenBank submission.
2] Li,M., Li,F., Pei,G. and Tong,Y. (2018) Direct GenBank submission.