ISCfr27

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP022152 ND Citrobacter freundii
Citrobacter freundii 705SK3 plasmid p705SK3_1
DNA section
IS Length : 1096 bp

Ends


IR Length : 19/34

IRL : TACCCGTGATCATTGAAGACGCTTGATTTTTCAGCAACAGGAGATCATGC
IRR : TACCCAATAAACCTCAAGATGCAGGTTTGAGCACCTGAAAATGATCGTTA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTAACTATATAAATTGATTAT2

DNA sequence

TACCCGTGATCATTGAAGACGCTTGATTTTTCAGCAACAGGAGATCATGCTGTCCCCATGAAAATCTTTATCACTGACCAACAAAAAGCTGAACTTGAGC
GTCTTCATGACTCCAGTCGTGATAAGCGCGTTTGCGATCGCATTAAAGCCATTCTTCTGGCCTCCGAGGGCTGGAGTTCGGCCATGATCGCTCAGGCTTT
ACGCCTGCATCAGACTACTGTTGACCACCATATCAGCGAGTTTCTGAACAAAGGCAAGCTGAAGCCCGAAAATGGCGGCTCAGACAGCAAACTCAGCGCT
GAACAAACGGCTTTTTTAATCAGCCACTTATCCGACAATTTATTTTACCATACCCGTGATATTGTCGCGTTTGTCGCGCGGACATGGAACATCGTTTTCA
GCATTCCGGGAATGAATAAGTGGCTGCACCGGAACGGCTTCACCTATAAAAAACCGTCAGGCGTCCCGCATAAATTCAGTGAAGAGAAACAAAAGCAATT
CATTGAATATTATGAGGAACTCAAAGCCACCGCAGGTGATGAACCGGTTCTTTTTATTGATGCTGTCCATCCGACTCAGGCCACCAAAATAGGTTATGGC
TGGATACGTAAAGGCCAGAGAAAAGCGGTAAAAACAACAGGTAGTCGTACACGGCTGAATATCATGGGGGCGCTGAATCTGAAGGCCCCGGAACATCCGC
TAATCTGCGAATATAAAACGGTTAATGAATACAACGTATCTCGTTTTTTCAATGAGATACGTAAAATTTATCCAGATTATCAGCAGAAAGTTCATGTTAT
TCTGGATGGTGCTGGTTATCACCGTTCACAGTTAGTGAAAGACTGGGCGGAGGTGGTAAATATAAAACTTCATTACCTCCCGCCGTACAGCCCGAACCTG
AATCCGATAGAACGAATGTGGAAGTTAATGAACGAACATGCCCGGAATAACCGCTACTTCAGCAACAGCAGGGAGTTCAGGGATGCAATATCTGAATTTT
TCAGCCATACGTTACCGGGGATAGCGGGTTTTCTGACGTCCCGAATTAACGATCATTTTCAGGTGCTCAAACCTGCATCTTGAGGTTTATTGGGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa581083+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

ATGAAAATCTTTATCACTGACCAACAAAAAGCTGAACTTGAGCGTCTTCATGACTCCAGTCGTGATAAGCGCGTTTGCGATCGCATTAAAGCCATTCTTC
TGGCCTCCGAGGGCTGGAGTTCGGCCATGATCGCTCAGGCTTTACGCCTGCATCAGACTACTGTTGACCACCATATCAGCGAGTTTCTGAACAAAGGCAA
GCTGAAGCCCGAAAATGGCGGCTCAGACAGCAAACTCAGCGCTGAACAAACGGCTTTTTTAATCAGCCACTTATCCGACAATTTATTTTACCATACCCGT
GATATTGTCGCGTTTGTCGCGCGGACATGGAACATCGTTTTCAGCATTCCGGGAATGAATAAGTGGCTGCACCGGAACGGCTTCACCTATAAAAAACCGT
CAGGCGTCCCGCATAAATTCAGTGAAGAGAAACAAAAGCAATTCATTGAATATTATGAGGAACTCAAAGCCACCGCAGGTGATGAACCGGTTCTTTTTAT
TGATGCTGTCCATCCGACTCAGGCCACCAAAATAGGTTATGGCTGGATACGTAAAGGCCAGAGAAAAGCGGTAAAAACAACAGGTAGTCGTACACGGCTG
AATATCATGGGGGCGCTGAATCTGAAGGCCCCGGAACATCCGCTAATCTGCGAATATAAAACGGTTAATGAATACAACGTATCTCGTTTTTTCAATGAGA
TACGTAAAATTTATCCAGATTATCAGCAGAAAGTTCATGTTATTCTGGATGGTGCTGGTTATCACCGTTCACAGTTAGTGAAAGACTGGGCGGAGGTGGT
AAATATAAAACTTCATTACCTCCCGCCGTACAGCCCGAACCTGAATCCGATAGAACGAATGTGGAAGTTAATGAACGAACATGCCCGGAATAACCGCTAC
TTCAGCAACAGCAGGGAGTTCAGGGATGCAATATCTGAATTTTTCAGCCATACGTTACCGGGGATAGCGGGTTTTCTGACGTCCCGAATTAACGATCATT
TTCAGGTGCTCAAACCTGCATCTTGA

 

Blast result :
Comments
ISCfr27 is 94% aa similar to ISEc40.
References
1] Manli Li (2018) Direct submission.
2] Li,M., Li,F., Pei,G. and Tong,Y. (2018) Direct GenBank submission.