ISCfr26

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MG387191 ND Citrobacter freundii
Citrobacter freundii strain 2262 plasmid pTEM-2262
DNA section
IS Length : 1365 bp

Ends


IR Length : 12/13

IRL : GAATGGAAGGGACTTCCCCTGATTATGCGCCTGATTAACTCTTGTGCAAT
IRR : TATAAGGACTTCCCCGGCATGTCAAAGCCGGTATTTATGGTTTCTGTCTG

Comments : IRs are not at the termini according to the rules of this group.

Insertion site


Left flankDirect repeatRight flankDR Length
TAATGCGCTTAACGTACAATAATTT0

DNA sequence

GAATGGAAGGGACTTCCCCTGATTATGCGCCTGATTAACTCTTGTGCAATCATGGGGTACACATCGTCCCGGAGGAATTCGTTATGACTATCACGACTGT
CGGTATCGATCTTGCTAAAAATGTGTTTGCTGTTCACGGTGTTGATCAAAATGGTAGAACTGTTCTGGTTAAGCCTAAAGTATCGCGTGCTGCACTTCCT
GAGTTAATTGCAAGTTTGCCTCCCTGTGTTATCGGGATGGAAGCATGCTCCGGGGCTCACTACTGGGCAAGATTGTTTCGGCAGTATGGTCATGAGCCAC
GTCTGATGGCTGCTAAGTTTGTATCGCCTTATCGTATGGCCGGAAAATCAGGAAAAAATGATGCAGCTGATGCTCAGGCTATCTGTGAAGCTGTTCGTCG
TCCGCATATGCGGTTCGTACCAGTGAAAGACGAAAGCCAGCAGGCCATGCAGTGTTTACATCGTACCCGTCAGGGTTTTATCGAAGAGAAAACAGCAACG
TATAATCGTCTGCGAGGATTGATATCTGAATTCGGTGTCATCGCGCCACAAAGTGCTGATGCCCTGCGCCACATGGTTTCTGTGCAGAAGAGCTCTTTAC
CGCTTCAGGTTCAGCAATGTGTTGATGATTTGATGGAACACGTTGATCGCATTGAAGCTAACATCACTGAATATGACCGAATTTTGTCCCACATAGCCAA
AACAGATCATCGCAGTCAGCGGCTGATGGAGCTAAAGGGCGTTGGTCCCACAACGGCCTGTGCACTGGTCGCCAGTATCGGTAATGCACATGATTTTAAA
AATGGACGTCAACTGGCAGCCTGGCTGGGGCTGACGCCATCACAATACAGCAGCGGGGGAAAGTCGAAACTCGGCAGGATCACAAAAGCCGGTGATTCGT
ATCTGCGAACGCTTCTGGTTCAGGGGGCTCGTTCAGTGCTTATTGGCGCCGGGAAAAGGACTGACTCATTCAGCCGTTGGGTTTGTATGTTGGTTGAGCG
CAGAGGGTACTGGCGGGCTGTTGTGGCCATCGCCGCCAAAAATGCGCGGCTGTGTTGGGCATCACTACATTACGGTGATGATTTCCGGCTGTACTCAGTC
AACTAAAGCTCGAAGCTGTATAACCATCTGACCTGCAATTCGTTGATGATAAAGGGTTAGACCCCGTGAGGCCTATCTGGCTATTGTACAGGATATACGT
ATCCGCTTAACGAACAAGAACCTCACGCGCGTCTTTCATCAGGGCCCGAATCGATGACGATTCATCATGGCCGTTTATAGTACCGCAGTCTCTCCCCTTT
ATTTTTACTGAAGAGCAGACAGAAACCATAAATACCGGCTTTGACATGCCGGGGAAGTCCTTATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa841106+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTITTVGIDLAKNVFAVHGVDQNGRTVLVKPKVSRAALPELIASLPPCVIGMEACSGAHYWARLFRQYGHEPRLMAAKFVSPYRMAGKSGKNDAADAQAI
CEAVRRPHMRFVPVKDESQQAMQCLHRTRQGFIEEKTATYNRLRGLISEFGVIAPQSADALRHMVSVQKSSLPLQVQQCVDDLMEHVDRIEANITEYDRI
LSHIAKTDHRSQRLMELKGVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAGKRTDSFSRWV
CMLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSVN

 

Blast result :
Comments
ISCfr26 is 96% aa similar to IS1618.
References
1] Manli Li (2018) Direct submission.
2] Li,M., Li,F., Pei,G. and Tong,Y. (2018) Direct GenBank submission.