ISCfr26
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MG387191 | ND | Citrobacter freundii | Citrobacter freundii strain 2262 plasmid pTEM-2262 |
DNA section
IS Length : 1365 bp
Ends
IR Length : 12/13
IRL : GAATGGAAGGGACTTCCCCTGATTATGCGCCTGATTAACTCTTGTGCAAT
IRR : TATAAGGACTTCCCCGGCATGTCAAAGCCGGTATTTATGGTTTCTGTCTG
Comments : IRs are not at the termini according to the rules of this group.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATGCGCTTAAC | GTACAATAATTT | 0 |
DNA sequence
GAATGGAAGGGACTTCCCCTGATTATGCGCCTGATTAACTCTTGTGCAATCATGGGGTACACATCGTCCCGGAGGAATTCGTTATGACTATCACGACTGT
CGGTATCGATCTTGCTAAAAATGTGTTTGCTGTTCACGGTGTTGATCAAAATGGTAGAACTGTTCTGGTTAAGCCTAAAGTATCGCGTGCTGCACTTCCT
GAGTTAATTGCAAGTTTGCCTCCCTGTGTTATCGGGATGGAAGCATGCTCCGGGGCTCACTACTGGGCAAGATTGTTTCGGCAGTATGGTCATGAGCCAC
GTCTGATGGCTGCTAAGTTTGTATCGCCTTATCGTATGGCCGGAAAATCAGGAAAAAATGATGCAGCTGATGCTCAGGCTATCTGTGAAGCTGTTCGTCG
TCCGCATATGCGGTTCGTACCAGTGAAAGACGAAAGCCAGCAGGCCATGCAGTGTTTACATCGTACCCGTCAGGGTTTTATCGAAGAGAAAACAGCAACG
TATAATCGTCTGCGAGGATTGATATCTGAATTCGGTGTCATCGCGCCACAAAGTGCTGATGCCCTGCGCCACATGGTTTCTGTGCAGAAGAGCTCTTTAC
CGCTTCAGGTTCAGCAATGTGTTGATGATTTGATGGAACACGTTGATCGCATTGAAGCTAACATCACTGAATATGACCGAATTTTGTCCCACATAGCCAA
AACAGATCATCGCAGTCAGCGGCTGATGGAGCTAAAGGGCGTTGGTCCCACAACGGCCTGTGCACTGGTCGCCAGTATCGGTAATGCACATGATTTTAAA
AATGGACGTCAACTGGCAGCCTGGCTGGGGCTGACGCCATCACAATACAGCAGCGGGGGAAAGTCGAAACTCGGCAGGATCACAAAAGCCGGTGATTCGT
ATCTGCGAACGCTTCTGGTTCAGGGGGCTCGTTCAGTGCTTATTGGCGCCGGGAAAAGGACTGACTCATTCAGCCGTTGGGTTTGTATGTTGGTTGAGCG
CAGAGGGTACTGGCGGGCTGTTGTGGCCATCGCCGCCAAAAATGCGCGGCTGTGTTGGGCATCACTACATTACGGTGATGATTTCCGGCTGTACTCAGTC
AACTAAAGCTCGAAGCTGTATAACCATCTGACCTGCAATTCGTTGATGATAAAGGGTTAGACCCCGTGAGGCCTATCTGGCTATTGTACAGGATATACGT
ATCCGCTTAACGAACAAGAACCTCACGCGCGTCTTTCATCAGGGCCCGAATCGATGACGATTCATCATGGCCGTTTATAGTACCGCAGTCTCTCCCCTTT
ATTTTTACTGAAGAGCAGACAGAAACCATAAATACCGGCTTTGACATGCCGGGGAAGTCCTTATA
CGGTATCGATCTTGCTAAAAATGTGTTTGCTGTTCACGGTGTTGATCAAAATGGTAGAACTGTTCTGGTTAAGCCTAAAGTATCGCGTGCTGCACTTCCT
GAGTTAATTGCAAGTTTGCCTCCCTGTGTTATCGGGATGGAAGCATGCTCCGGGGCTCACTACTGGGCAAGATTGTTTCGGCAGTATGGTCATGAGCCAC
GTCTGATGGCTGCTAAGTTTGTATCGCCTTATCGTATGGCCGGAAAATCAGGAAAAAATGATGCAGCTGATGCTCAGGCTATCTGTGAAGCTGTTCGTCG
TCCGCATATGCGGTTCGTACCAGTGAAAGACGAAAGCCAGCAGGCCATGCAGTGTTTACATCGTACCCGTCAGGGTTTTATCGAAGAGAAAACAGCAACG
TATAATCGTCTGCGAGGATTGATATCTGAATTCGGTGTCATCGCGCCACAAAGTGCTGATGCCCTGCGCCACATGGTTTCTGTGCAGAAGAGCTCTTTAC
CGCTTCAGGTTCAGCAATGTGTTGATGATTTGATGGAACACGTTGATCGCATTGAAGCTAACATCACTGAATATGACCGAATTTTGTCCCACATAGCCAA
AACAGATCATCGCAGTCAGCGGCTGATGGAGCTAAAGGGCGTTGGTCCCACAACGGCCTGTGCACTGGTCGCCAGTATCGGTAATGCACATGATTTTAAA
AATGGACGTCAACTGGCAGCCTGGCTGGGGCTGACGCCATCACAATACAGCAGCGGGGGAAAGTCGAAACTCGGCAGGATCACAAAAGCCGGTGATTCGT
ATCTGCGAACGCTTCTGGTTCAGGGGGCTCGTTCAGTGCTTATTGGCGCCGGGAAAAGGACTGACTCATTCAGCCGTTGGGTTTGTATGTTGGTTGAGCG
CAGAGGGTACTGGCGGGCTGTTGTGGCCATCGCCGCCAAAAATGCGCGGCTGTGTTGGGCATCACTACATTACGGTGATGATTTCCGGCTGTACTCAGTC
AACTAAAGCTCGAAGCTGTATAACCATCTGACCTGCAATTCGTTGATGATAAAGGGTTAGACCCCGTGAGGCCTATCTGGCTATTGTACAGGATATACGT
ATCCGCTTAACGAACAAGAACCTCACGCGCGTCTTTCATCAGGGCCCGAATCGATGACGATTCATCATGGCCGTTTATAGTACCGCAGTCTCTCCCCTTT
ATTTTTACTGAAGAGCAGACAGAAACCATAAATACCGGCTTTGACATGCCGGGGAAGTCCTTATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 84 | 1106 | + | No |
Chemistry : DEDD
ORF sequence :
MTITTVGIDLAKNVFAVHGVDQNGRTVLVKPKVSRAALPELIASLPPCVIGMEACSGAHYWARLFRQYGHEPRLMAAKFVSPYRMAGKSGKNDAADAQAI
CEAVRRPHMRFVPVKDESQQAMQCLHRTRQGFIEEKTATYNRLRGLISEFGVIAPQSADALRHMVSVQKSSLPLQVQQCVDDLMEHVDRIEANITEYDRI
LSHIAKTDHRSQRLMELKGVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAGKRTDSFSRWV
CMLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSVN
CEAVRRPHMRFVPVKDESQQAMQCLHRTRQGFIEEKTATYNRLRGLISEFGVIAPQSADALRHMVSVQKSSLPLQVQQCVDDLMEHVDRIEANITEYDRI
LSHIAKTDHRSQRLMELKGVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAGKRTDSFSRWV
CMLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSVN
Blast result :
Comments
ISCfr26 is 96% aa similar to IS1618.
References
1] Manli Li (2018) Direct submission.
2] Li,M., Li,F., Pei,G. and Tong,Y. (2018) Direct GenBank submission.
2] Li,M., Li,F., Pei,G. and Tong,Y. (2018) Direct GenBank submission.