ISRein1
- Family IS5
- Group ISL2
Isoform Synonym(s) ISRin1
Accession number | Transposition | Origin | Host |
---|---|---|---|
GL379592 | ND | Regiella insecticola | Regiella insecticola LSR1 |
DNA section
IS Length : 920 bp
Ends
IR Length : 30/34
IRL : TATTAGACCTCTTCGGAAACTAGCATTCATATAAGAATTTTGGTAAAACA
IRR : TAATAGACCTCTTCGGAAACTATCATTTATCTAATTTCCATATTATAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCGACTTTG | TTT | ATTCTTCATC | 3 |
DNA sequence
TATTAGACCTCTTCGGAAACTAGCATTCATATAAGAATTTTGGTAAAACACTCCTGAACAAGGAGCCGCCATGAAATATGAAGTAATAAAAGTACTGGAA
GAGGAAAAATTTCGTCGCTTAACGGGTGTTAAACGCAGTACATTTGAAAAGATGATAAAGATATTGAATGAAGCAGATAAGAGTAAGCAAGGGAAAGGAG
GTCGGAAACCCAAGCGGGGTTTAGAAGAGCGCTTATTAATGGCACTGGAGTATATACGAGAATATCGCACTTATTTTCATGTCAGCCAAAGCTATGGCGT
GAGTGAGAGCACATGCTATGAAACGATTAAATGGATAGAGAATACGCTAATAAAGCATCCTGATTTTGCCCTACCTGGACGCAAAGCTGTATTAAAAAGG
GATAGGGAGTATGAGCTGGTTCTTATTGATGCCACAGAAACGCCGATTGAACGTCCCCAAAAAAACAAAAGCCGTTTTACTCAGGAAAAAAGAAACGACA
CACCTTAAAAACACAAGTGCTCGTTGATAAAAAAAGTAAAGCAGTCATCTGTACAAGCTTTACGAATGGGAGGCGCCATGATTTTAGGTTGTTTAAGGAG
TCTGGTGTGCGAATACATCCTGACATCAAAACAGTTACCGATACAGGTTACCAAGGGCTTGGCAAGATTCATTCAAACTCGGCGTTGCCTAAGAAAAAGA
CAAAGAAAAATCCCTTAACAAAAGAAGATAAACGCAACAATCGTGCGTTATCAAGCCAGCGTGTATTAAACGAACATGTCATTGGTATGATTAAAAGATT
TAAAATTGTATCAGACCGTTATCGAAACAGGCGAAAACGTTTTGGATTAAGATTTAATCTGATTGCTGCAATTTATAATATGGAAATTAGATAAATGATA
GTTTCCGAAGAGGTCTATTA
GAGGAAAAATTTCGTCGCTTAACGGGTGTTAAACGCAGTACATTTGAAAAGATGATAAAGATATTGAATGAAGCAGATAAGAGTAAGCAAGGGAAAGGAG
GTCGGAAACCCAAGCGGGGTTTAGAAGAGCGCTTATTAATGGCACTGGAGTATATACGAGAATATCGCACTTATTTTCATGTCAGCCAAAGCTATGGCGT
GAGTGAGAGCACATGCTATGAAACGATTAAATGGATAGAGAATACGCTAATAAAGCATCCTGATTTTGCCCTACCTGGACGCAAAGCTGTATTAAAAAGG
GATAGGGAGTATGAGCTGGTTCTTATTGATGCCACAGAAACGCCGATTGAACGTCCCCAAAAAAACAAAAGCCGTTTTACTCAGGAAAAAAGAAACGACA
CACCTTAAAAACACAAGTGCTCGTTGATAAAAAAAGTAAAGCAGTCATCTGTACAAGCTTTACGAATGGGAGGCGCCATGATTTTAGGTTGTTTAAGGAG
TCTGGTGTGCGAATACATCCTGACATCAAAACAGTTACCGATACAGGTTACCAAGGGCTTGGCAAGATTCATTCAAACTCGGCGTTGCCTAAGAAAAAGA
CAAAGAAAAATCCCTTAACAAAAGAAGATAAACGCAACAATCGTGCGTTATCAAGCCAGCGTGTATTAAACGAACATGTCATTGGTATGATTAAAAGATT
TAAAATTGTATCAGACCGTTATCGAAACAGGCGAAAACGTTTTGGATTAAGATTTAATCTGATTGCTGCAATTTATAATATGGAAATTAGATAAATGATA
GTTTCCGAAGAGGTCTATTA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
438 bp | 145 aa | 71 | 508 | + | No |
Description : First part of the transposase
ORF sequence :
MKYEVIKVLEEEKFRRLTGVKRSTFEKMIKILNEADKSKQGKGGRKPKRGLEERLLMALEYIREYRTYFHVSQSYGVSESTCYETIKWIENTLIKHPDFA
LPGRKAVLKRDREYELVLIDATETPIERPQKNKSRFTQEKRNDTP
LPGRKAVLKRDREYELVLIDATETPIERPQKNKSRFTQEKRNDTP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
444 bp | 147 aa | 451 | 894 | + | No |
Description : Second part of the transposase
ORF sequence :
TSPKKQKPFYSGKKKRHTLKTQVLVDKKSKAVICTSFTNGRRHDFRLFKESGVRIHPDIKTVTDTGYQGLGKIHSNSALPKKKTKKNPLTKEDKRNNRAL
SSQRVLNEHVIGMIKRFKIVSDRYRNRRKRFGLRFNLIAAIYNMEIR
SSQRVLNEHVIGMIKRFKIVSDRYRNRRKRFGLRFNLIAAIYNMEIR
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
824 bp | 274 aa | 71 | 894 | + | Yes |
Chemistry : DDE
ORF sequence :
MKYEVIKVLEEEKFRRLTGVKRSTFEKMIKILNEADKSKQGKGGRKPKRGLEERLLMALEYIREYRTYFHVSQSYGVSESTCYETIKWIENTLIKHPDFA
LPGRKAVLKRDREYELVLIDATETPIERPQKKQKPFYSGKKKRHTLKTQVLVDKKSKAVICTSFTNGRRHDFRLFKESGVRIHPDIKTVTDTGYQGLGKI
HSNSALPKKKTKKNPLTKEDKRNNRALSSQRVLNEHVIGMIKRFKIVSDRYRNRRKRFGLRFNLIAAIYNMEIR
LPGRKAVLKRDREYELVLIDATETPIERPQKKQKPFYSGKKKRHTLKTQVLVDKKSKAVICTSFTNGRRHDFRLFKESGVRIHPDIKTVTDTGYQGLGKI
HSNSALPKKKTKKNPLTKEDKRNNRALSSQRVLNEHVIGMIKRFKIVSDRYRNRRKRFGLRFNLIAAIYNMEIR
Blast result :
Comments
ISRein1 is 87% aa similar to ISOt6.
The original sequence was submitted to NCBI under the name ISRin1 but this is not the correct nomenclature.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The original sequence was submitted to NCBI under the name ISRin1 but this is not the correct nomenclature.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder submission (2018)
2] Degnan,P.H., Gibbs,R.A., Richards,S. and Moran,N.A. (2009) Direct GenBank submission.
2] Degnan,P.H., Gibbs,R.A., Richards,S. and Moran,N.A. (2009) Direct GenBank submission.