ISMbov4

  • Family IS3
  • Group IS150
MGE type ISRelated element(s) :
Isoform Synonym(s) ISMbov7
Accession numberTranspositionOriginHost
CP002513 ND Mycoplasma bovis
Mycoplasma bovis Hubei-1
DNA section
IS Length : 1340 bp

Ends


IR Length : 23/26

IRL : TACACTAGGACAAAAAAAGTAGACATCAGCAAATTTGCTGATGTTTTTTG
IRR : TAAACTAGGACAATAAAAATAGACATTAAATTTTTATTTTTTACAAAACT

Insertion site


Left flankDirect repeatRight flankDR Length
ATAAAAAACCATCTCTTAAATAGTGGCGTTCTT3

DNA sequence

TACACTAGGACAAAAAAAGTAGACATCAGCAAATTTGCTGATGTTTTTTGTTGGAGATAAAAATGGCTAAGCAGTTAAGTGTTAATGAATGGAAATATTT
GTTTGAAAAATACGAAAAATATAGATCTGGGGAACTCACTAAAAAATGTTTTTTGAATGAAATGATGAAAATAAAAAATGTAAAACACATTTCTGACGAT
CAATGAAAGAGATTAGTGAATAAGTATAAAAGATATAATTTAGGCATGAACATAGAATCAATGAGTGGAAGATCGCCTAAAAAAGGTAAAGGTTCCGGCA
GGCCAAAAAAGACAAAATCAAATGACGAAATATTAGATGAATTTTTAAATGATCTAAATAAAGAAGATTTGATAAAGATAATAAAAATAATTTCTACAGA
TGACGAAATTAAGAAGATAAAAAAGGACAAATTTAAAGAAACGGTTACCAAAATAAAGAATTCATTTCCCTTTAAGGTATCGAATAAAGTTATTATGTCA
TTGCTTAAAATTAAAAAATCTACATACTATAAAAAGCTAAAAAAATTGAAAATGATTAAAGAAAAAAATCTTGAATTAGAGAATGCTGTGGTTCAAGCTT
TTAAAGAAACTGGAGGCATTTTCGGCAGAGAAAGATTGGCTGCTTATATTAGCAAAAATAAACAAATAAAGCTTAATTATAGGACTTTAGGTAGAATAAT
GAAAAAACTTGGACTAGTTTGTAGAATAAGAAAAGCAAAAAGAACAAAAGAATCTAAGAATGTAGCTGTAACGTTTCAAAATATTGCTTCTCGTGACTAT
GATGGCATATATAATGATATCTATGCTACTGATGTTACATACATACCTTCGCCAATAGATGTTGATCAAAATTTTGTATATATGTCGGCTGTTATTCATC
ATAAAACCAAAAAAATTTTAGGTTTTAACCTGTCTTTGTACAATGATAATTCATTGGTTATTGATAATATTAAAAAAGTTAATTTTCCCAAAAATTTTGT
TATACATTCTGACCACGGAAGTCAATATTCATCTAAAGAATATCTTCAGTTAATTGAAAGACTTAATGGAAAAGTATCAATGTCAAGAATTGGCAATTCT
CTTGACAATAGAGAAATTGAATACTTTTTTTCAGTACTTAAAACTGAAATGTTTGAAAATTTTGAGAAAAGTGTTAAGAAAATGACGCTTAAGGAACTTG
AGCGTCATCTAAATAGATTCATTGATTGGTATAATAATGAGCGAATGCTCAAGAAATTTAATTACAAAACTCCACATGAATTGTGAGTGGAGTTTTGTAA
AAAATAAAAATTTAATGTCTATTTTTATTGTCCTAGTTTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1245 bp414 aa631307+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKQLSVNEWKYLFEKYEKYRSGELTKKCFLNEMMKIKNVKHISDDQWKRLVNKYKRYNLGMNIESMSGRSPKKGKGSGRPKKTKSNDEILDEFLNDLNK
EDLIKIIKIISTDDEIKKIKKDKFKETVTKIKNSFPFKVSNKVIMSLLKIKKSTYYKKLKKLKMIKEKNLELENAVVQAFKETGGIFGRERLAAYISKNK
QIKLNYRTLGRIMKKLGLVCRIRKAKRTKESKNVAVTFQNIASRDYDGIYNDIYATDVTYIPSPIDVDQNFVYMSAVIHHKTKKILGFNLSLYNDNSLVI
DNIKKVNFPKNFVIHSDHGSQYSSKEYLQLIERLNGKVSMSRIGNSLDNREIEYFFSVLKTEMFENFEKSVKKMTLKELERHLNRFIDWYNNERMLKKFN
YKTPHELWVEFCKK

 

Blast result :
Comments
ISMbov4 is 70% aa similar to ISMmy2.
Inserted into an ISMbov2 (IS1634 family) copy.
References
1] ISfinder submission (2018)
2] Li,Y., Zheng,H., Liu,Y., Jiang,Y., Xin,J., Chen,W. and Song,Z. (2011) PLoS ONE 6 (6), E20999.