ISMyo2

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KP861986 ND Mycobacterium yongonense
Mycobacterium yongonense DSM 45126
DNA section
IS Length : 2630 bp

Ends


IR Length : 21/28

IRL : TGTCGGCTGCCAGGGACAAGGGGCCAGCTCGGCGCCGGTTTTGCCATGAG
IRR : TGTCGCTTGCCAGGGTGATGGGACCACCGTTTTGCCATGAGCATGGGACC

Insertion site


Left flankDirect repeatRight flankDR Length
CATTGCCGGAATTTTCGACTTCGCTTGATCTACTATCTGTG0

DNA sequence

TGTCGGCTGCCAGGGACAAGGGGCCAGCTCGGCGCCGGTTTTGCCATGAGCATGGGACCACCCGTTTGCCAGTGATGGGACCACCTGGCTAGCTGTTTTG
CCAGTTATGGGACCACCCGGCGTGGCGTCGGGGCTTCCGGTTGCTCGGCCGCTGTATTGGCCGAATGAGCTACCGGGAGGTTTCTGTGATCGAAGTCAAG
GAGATGTTGCGGCTGTGGCTGGATGGTCGCGGGTATCGGGAGGTGGCCCGGCTCTCGGGCACCGACCGCAAAACGGTGCGCCGGTATGTGGATCGGGCGC
GCGCGTGCGGGCTGGACCGTGATGGCGACGCCTGTCAGCTGACTGACGAGCTGTTGGCGGCGGTGATCGCCGAGGTGCGGCCGAGCCGGCCCAACGGCAA
GAGCCAGACGTGGGAGATCATCGACACTCAGCGTGAGCAGGTCCAGGCGTGGCTGAAACAGGACTTGACCTTGACGAAGGTGCACACGCTACTGGGCAGG
CGCGGAGTGGTGGTGTCGTATCGCACGTTGCATCGATATGCCACAACGGAATTGGGCTTTGGGCAACGGCGGGCCACGGTGCCGGTGGCCGATTGTGAGC
CCGGCAGCGAACTGCAGGTCGACTTCGGTCGACTCGGGCTGCTCACCGACATCGAGGACGGCCGCCGGCGGGTGGTGCATGGGTTGATCTTCACCGCGGT
GTATTCGCGGCACATGTTCGTTTGGCCCACCTACCGGCAGACCCTGGGCGAGGTGATCGCCGGGTTCGAAGCGGCGTGGGTGTTCTTTGGTGGGGTGTTC
GCGGTGGTGATCCCGGACAACATGAAGACCATCGTGGATAAGGCTGATGCGACCGACGCGAAGCTCAACGACGCATTTCGCGAATATGCCCAGGCTCGGG
GATTCGCTGTGGACCCCACCCGCATCCGCAGCCCCCGCGATAAGCCTCGCGTCGAACGCTGCGTCCAATATGTGAGATCGAATTTCTTTGCCGGAGAAGA
CTTTCGGAACCTGAGTGACTGCCGCGCGCGAGCTGAGCAGTGGTGTGGGCAGGTGGCCGGGATGCGAATCCACGGCACCACCCGGTGCCGCCCGGTCGAG
GTGTTCGCCGCCGAGGAGCTACCCCAACTCAAGCCGGTGCCCAACGAGGTGTTCGACATCCCGACCTGGAGCCGGCCCAAGGTGGCCCCGGATCGGCATG
TGCAGATCGCGCGGGCGCTTTACAGCGTTCCCGGCGAGCTGATTGGCCGCCGCCTCGATGCCCGCGTGGATGCGCATACGGTCAAACTGTATTGGCGCGG
TGAGCTGATCAAGGTCCACCCCGTGGTGGGTCCGGGGCGCCGCCACACCGATCCCGCCGACCTGCCCGCTGAGGTGTCGGTCTATGCCATGCGGGATCTG
AACACGTTGCAGCGCAAGGCAGCCACCCACGGCACCCATGTCGGCGTCTACGCCGCCGCGGTGTTAGAACACCCGCTGCCGTGGACCAAGATGCGCCAGG
TCTACCGCCTGTTGGGATTGGTGCGCCGCCACGGCGCGGAGGCGGTCGATGATGCCTGCCGACGCGCGCTGGACGCCGAGGTCATCGACGTCGGCCTGAT
CGAGCGCATGCTCACCCGTGGCGCCGGTGCGCAGCTGCCGCTGATCCCCAAGCCGTCGCCCACGGCATCCAGATTCGTGCGCGCCGCCACTGACTTTACG
GTGCGGAGGCCATCATGAGCCCCGCCCGTCCTGACGCCACCCCAGCGGTCAAGCCGATCGAGATCTCTGCAGACCTCAAAGTCCTGATGCGCCGTCTTAA
GCTCGGCCAGCTGCTCGACACCCTGCCCGAACGGCTCGCCTTGGCACGATCCAATCGGTTGCCGCATCACGATTTCCTGGAGATGCTGCTGGCCGATGAG
GTCACCCGCCGCGACCGCAAATCCGCCCAACTACGCGCCAAGGCGGCCCGTCTGGATCCGCAGATGCAGTTACAGGCCTGGGACGATACCGCCGCGGTCA
GCTACGACCGCCAGTTGTGGGCAGAGTTGACCTCGCTGCGGTTTTTGGCCGACGCCTACAACGTGCTCATCATGGGCCCGGTCGGGGTCGGAAAAACGTT
CCTGGCCAACGCCTTAGGACACATCGCGGTCCGACGTCACCACAGCGTGCACACCGAACGCGCCGACAAACTCTTCAAACGCCTACGCGGGGCACGGCTA
GACGGCAGCTATGAAGACGAGGTACGCAAACTGCACCGCGTCGAGCTACTCATCATCGATGACCTCGCGTTGCACCGGCTTGAAACCACCGAGACCAATG
ACTTCTATGAAATCATCGTGGAACGCCACCGCACCGCCTCAACGATCATCACCAGCAACCGCGAACCCCCAGAGATTCTCACCATGATGGCCGACCCACT
GCTGGCGCAGTCGGCGATGGACCGGCTCCAATCCGCGGCCTACGAACTCGTCGTCGAAGGCGAGTCCTACCGGCAACGTCAGAAACCCCGCCCCGCAAAG
CCGGTCAATTCGGACCAGCCGAATTGACCAGCAGCCATCTCGTCAGTCACCATCACAACGGCCAGTAACCGGAAACAACCGGTCCCATGCTCATGGCAAA
ACGGTGGTCCCATCACCCTGGCAAGCGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1578 bp525 aa1411718+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLGRCIGRMSYREVSVIEVKEMLRLWLDGRGYREVARLSGTDRKTVRRYVDRARACGLDRDGDACQLTDELLAAVIAEVRPSRPNGKSQTWEIIDTQREQ
VQAWLKQDLTLTKVHTLLGRRGVVVSYRTLHRYATTELGFGQRRATVPVADCEPGSELQVDFGRLGLLTDIEDGRRRVVHGLIFTAVYSRHMFVWPTYRQ
TLGEVIAGFEAAWVFFGGVFAVVIPDNMKTIVDKADATDAKLNDAFREYAQARGFAVDPTRIRSPRDKPRVERCVQYVRSNFFAGEDFRNLSDCRARAEQ
WCGQVAGMRIHGTTRCRPVEVFAAEELPQLKPVPNEVFDIPTWSRPKVAPDRHVQIARALYSVPGELIGRRLDARVDAHTVKLYWRGELIKVHPVVGPGR
RHTDPADLPAEVSVYAMRDLNTLQRKAATHGTHVGVYAAAVLEHPLPWTKMRQVYRLLGLVRRHGAEAVDDACRRALDAEVIDVGLIERMLTRGAGAQLP
LIPKPSPTASRFVRAATDFTVRRPS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
813 bp270 aa17152527+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MSPARPDATPAVKPIEISADLKVLMRRLKLGQLLDTLPERLALARSNRLPHHDFLEMLLADEVTRRDRKSAQLRAKAARLDPQMQLQAWDDTAAVSYDRQ
LWAELTSLRFLADAYNVLIMGPVGVGKTFLANALGHIAVRRHHSVHTERADKLFKRLRGARLDGSYEDEVRKLHRVELLIIDDLALHRLETTETNDFYEI
IVERHRTASTIITSNREPPEILTMMADPLLAQSAMDRLQSAAYELVVEGESYRQRQKPRPAKPVNSDQPN

 

Blast result :
Comments
ISMyo2 is 51% (transposase) aa similar to ISMt2.
References
1] ISfinder submission (2018)
2] Kim,B.J., Kim,K., Kim,B.R., Kook,Y.H. and Kim,B.J. (2015) BMC Genomics 16 (1), 794