ISPpu33
- Family IS3
- Group IS51
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF151431 | ND | Pseudomonas putida | Pseudomonas putida Pseudomonas putida transposon Tn4652 Pseudomonas putida strain KT2440 chromosome I Pseudomonas fluorescens SBW25 plasmid pQBR55 |
DNA section
IS Length : 1306 bp
Ends
IR Length : 26
IRL : TGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCC
IRR : TGAACCGCCCCGGGTTTCGCGGAGGCTGTTTTGTTTGAGTCAGGCAGCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGAGCAAGCACACCAAATTTTCCCCTGAAGTCCGTGACCGGGCCAT
CCGTATGGTTTATGAGGTCCGGGAGTCCCGCACATCGCAGTGGGCCGCCATTGAGGCCGTGGCCAGCAAGATCGGCTGCACCGCCCAGACGTTGAGCAGT
TGGATTCGGAAGGCGGCTGCGCCTGCGGCCCCCTCCGCCTCGGGCACTGATGCCCGCGTCAAGGAACTGGAGCGCGAGGTTCGTGAGCTCAAGCGAGCCA
ACGAAATCCTCAAGGTCGCCAGCGCTTTTTCCGCCCAGGCGGAGCTCGACCGCCGTTTGAAGTGATCTGGCAGCTGATCGACAAGCACCGGCAAAGCTTT
GGAGTCGAGCCACTGTGCCGCGTGTTGCAAGTGTCTCCATCGGCTTACCGGCGCCATGCTGCACGGCTACGTGACCGCTCACGACGCTCCGCCCGAGCGA
TCCGTGACGAGGAACTTGCTGTACAAATTCACCGTGTCTGGCAGGAAAACTACGAGGTCTACGGGGCTAGGAAAGTCTGGCGGCAGATGCATCGCGAACA
CCAGGTGGTTGCGCGCTGCACAGTGGAACGGTTGATGCGTGAAATGGGGCTCTGCGGCGTAACGCGGGGCAAAACGGTGAAAACCACACAACCCGATCCT
GACAATGCCAATCCCAGGGATCTGGTAAAGCGCCAGTTCACGGCCGAACGTCCCAATCAGCTCTGGGTCGCCGATTTCACATTCGTTTCAACCTGGCAGG
GATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCT
GGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTG
GGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAACTGATCC
ATAAGCGAGGGCCGTGGAAAAGCGTAGACAGTCTGGAGTGGGAAACGCTGAAGTGGGTGACCTGGTTCAACCATCAGCGCCTGCTGGAGCCAATTGGAAA
TAGGCCACCGGCCGAGTTTGAGGCACTATATGAACAGAGTCAGGCAACCATATCGGTTGCTGCCTGACTCAAACAAAACAGCCTCCGCGAAACCCGGGGC
GGTTCA
CCGTATGGTTTATGAGGTCCGGGAGTCCCGCACATCGCAGTGGGCCGCCATTGAGGCCGTGGCCAGCAAGATCGGCTGCACCGCCCAGACGTTGAGCAGT
TGGATTCGGAAGGCGGCTGCGCCTGCGGCCCCCTCCGCCTCGGGCACTGATGCCCGCGTCAAGGAACTGGAGCGCGAGGTTCGTGAGCTCAAGCGAGCCA
ACGAAATCCTCAAGGTCGCCAGCGCTTTTTCCGCCCAGGCGGAGCTCGACCGCCGTTTGAAGTGATCTGGCAGCTGATCGACAAGCACCGGCAAAGCTTT
GGAGTCGAGCCACTGTGCCGCGTGTTGCAAGTGTCTCCATCGGCTTACCGGCGCCATGCTGCACGGCTACGTGACCGCTCACGACGCTCCGCCCGAGCGA
TCCGTGACGAGGAACTTGCTGTACAAATTCACCGTGTCTGGCAGGAAAACTACGAGGTCTACGGGGCTAGGAAAGTCTGGCGGCAGATGCATCGCGAACA
CCAGGTGGTTGCGCGCTGCACAGTGGAACGGTTGATGCGTGAAATGGGGCTCTGCGGCGTAACGCGGGGCAAAACGGTGAAAACCACACAACCCGATCCT
GACAATGCCAATCCCAGGGATCTGGTAAAGCGCCAGTTCACGGCCGAACGTCCCAATCAGCTCTGGGTCGCCGATTTCACATTCGTTTCAACCTGGCAGG
GATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCT
GGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTG
GGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAACTGATCC
ATAAGCGAGGGCCGTGGAAAAGCGTAGACAGTCTGGAGTGGGAAACGCTGAAGTGGGTGACCTGGTTCAACCATCAGCGCCTGCTGGAGCCAATTGGAAA
TAGGCCACCGGCCGAGTTTGAGGCACTATATGAACAGAGTCAGGCAACCATATCGGTTGCTGCCTGACTCAAACAAAACAGCCTCCGCGAAACCCGGGGC
GGTTCA
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
312 bp | 102 aa | 54 | 365 | + | No |
Chemistry : DDE
ORF sequence :
MSKHTKFSPEVRDRAIRMVYEVRESRTSQWAAIEAVASKIGCTAQTLSSWIRKAAAPAAPSASGTDARVKELEREVRELKRANEILKVASAFSAQAELDR
RLK
RLK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 287 | 1267 | + | No |
Chemistry : DDE
ORF sequence :
AQASQRNPQGRQRFFRPGGARPPFEVIWQLIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDEELAVQIHRVWQENYEVYGARKVWRQ
MHREHQVVARCTVERLMREMGLCGVTRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEF
VLDALEQALHTRRPEPHRLVHHSDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTELIHKRGPWKSVDSLEWETLKWVTWFNHQRLL
EPIGNRPPAEFEALYEQSQATISVAA
MHREHQVVARCTVERLMREMGLCGVTRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEF
VLDALEQALHTRRPEPHRLVHHSDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTELIHKRGPWKSVDSLEWETLKWVTWFNHQRLL
EPIGNRPPAEFEALYEQSQATISVAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1214 bp | 404 aa | 54 | 1267 | + | Yes |
Chemistry : DDE
ORF sequence :
MSKHTKFSPEVRDRAIRMVYEVRESRTSQWAAIEAVASKIGCTAQTLSSWIRKAAAPAAPSASGTDARVKELEREVRELKRANEILKVASAFFRPGGARP
PFEVIWQLIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDEELAVQIHRVWQENYEVYGARKVWRQMHREHQVVARCTVERLMREMGL
CGVTRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEFVLDALEQALHTRRPEPHRLVHH
SDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTELIHKRGPWKSVDSLEWETLKWVTWFNHQRLLEPIGNRPPAEFEALYEQSQATI
SVAA
PFEVIWQLIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDEELAVQIHRVWQENYEVYGARKVWRQMHREHQVVARCTVERLMREMGL
CGVTRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEFVLDALEQALHTRRPEPHRLVHH
SDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTELIHKRGPWKSVDSLEWETLKWVTWFNHQRLLEPIGNRPPAEFEALYEQSQATI
SVAA
Blast result :
Comments
ISPpu33 is 79% aa similar to ISStma17.
References
1) Chandler M (2018) Direct submission to ISfinder