ISPpu33

  • Family IS3
  • Group IS51
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF151431 ND Pseudomonas putida
Pseudomonas putida
Pseudomonas putida transposon Tn4652
Pseudomonas putida strain KT2440 chromosome I
Pseudomonas fluorescens SBW25 plasmid pQBR55
DNA section
IS Length : 1306 bp

Ends


IR Length : 26

IRL : TGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCC
IRR : TGAACCGCCCCGGGTTTCGCGGAGGCTGTTTTGTTTGAGTCAGGCAGCAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGAGCAAGCACACCAAATTTTCCCCTGAAGTCCGTGACCGGGCCAT
CCGTATGGTTTATGAGGTCCGGGAGTCCCGCACATCGCAGTGGGCCGCCATTGAGGCCGTGGCCAGCAAGATCGGCTGCACCGCCCAGACGTTGAGCAGT
TGGATTCGGAAGGCGGCTGCGCCTGCGGCCCCCTCCGCCTCGGGCACTGATGCCCGCGTCAAGGAACTGGAGCGCGAGGTTCGTGAGCTCAAGCGAGCCA
ACGAAATCCTCAAGGTCGCCAGCGCTTTTTCCGCCCAGGCGGAGCTCGACCGCCGTTTGAAGTGATCTGGCAGCTGATCGACAAGCACCGGCAAAGCTTT
GGAGTCGAGCCACTGTGCCGCGTGTTGCAAGTGTCTCCATCGGCTTACCGGCGCCATGCTGCACGGCTACGTGACCGCTCACGACGCTCCGCCCGAGCGA
TCCGTGACGAGGAACTTGCTGTACAAATTCACCGTGTCTGGCAGGAAAACTACGAGGTCTACGGGGCTAGGAAAGTCTGGCGGCAGATGCATCGCGAACA
CCAGGTGGTTGCGCGCTGCACAGTGGAACGGTTGATGCGTGAAATGGGGCTCTGCGGCGTAACGCGGGGCAAAACGGTGAAAACCACACAACCCGATCCT
GACAATGCCAATCCCAGGGATCTGGTAAAGCGCCAGTTCACGGCCGAACGTCCCAATCAGCTCTGGGTCGCCGATTTCACATTCGTTTCAACCTGGCAGG
GATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCT
GGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTG
GGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAACGGCCTCTACAAGACCGAACTGATCC
ATAAGCGAGGGCCGTGGAAAAGCGTAGACAGTCTGGAGTGGGAAACGCTGAAGTGGGTGACCTGGTTCAACCATCAGCGCCTGCTGGAGCCAATTGGAAA
TAGGCCACCGGCCGAGTTTGAGGCACTATATGAACAGAGTCAGGCAACCATATCGGTTGCTGCCTGACTCAAACAAAACAGCCTCCGCGAAACCCGGGGC
GGTTCA
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
312 bp102 aa54365+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKHTKFSPEVRDRAIRMVYEVRESRTSQWAAIEAVASKIGCTAQTLSSWIRKAAAPAAPSASGTDARVKELEREVRELKRANEILKVASAFSAQAELDR
RLK

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
981 bp326 aa2871267+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

AQASQRNPQGRQRFFRPGGARPPFEVIWQLIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDEELAVQIHRVWQENYEVYGARKVWRQ
MHREHQVVARCTVERLMREMGLCGVTRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEF
VLDALEQALHTRRPEPHRLVHHSDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTELIHKRGPWKSVDSLEWETLKWVTWFNHQRLL
EPIGNRPPAEFEALYEQSQATISVAA

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1214 bp404 aa541267+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKHTKFSPEVRDRAIRMVYEVRESRTSQWAAIEAVASKIGCTAQTLSSWIRKAAAPAAPSASGTDARVKELEREVRELKRANEILKVASAFFRPGGARP
PFEVIWQLIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDEELAVQIHRVWQENYEVYGARKVWRQMHREHQVVARCTVERLMREMGL
CGVTRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEFVLDALEQALHTRRPEPHRLVHH
SDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTELIHKRGPWKSVDSLEWETLKWVTWFNHQRLLEPIGNRPPAEFEALYEQSQATI
SVAA

 

Blast result :
Comments
ISPpu33 is 79% aa similar to ISStma17.
References
1) Chandler M (2018) Direct submission to ISfinder