ISMlu12

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001628 ND Micrococcus luteus
Micrococcus luteus NCTC 2665
DNA section
IS Length : 1462 bp

Ends


Left end : TTACCTTCTTCGTGGCTCCTGGATCCGGCAGGATCAGGGAGTGCTGGCCGGCCGGTCCTGGGCATGATCGTTTGCCCCCAGTCATCCATGATCCGGGGGG
Right end : TACGCGATGCTCCGCGATGGCACCCTGTATCAAGATCCGACCGCCCCGCCAGCACCATCATCAGTCGCTCTCGCGGCTTGACGAAAACCATAGAGGCACC

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCGCCCTGCCCCCGACTTGCCGGG6

DNA sequence

TTACCTTCTTCGTGGCTCCTGGATCCGGCAGGATCAGGGAGTGCTGGCCGGCCGGTCCTGGGCATGATCGTTTGCCCCCAGTCATCCATGATCCGGGGGG
TGTTGTCACCCAGGACCGGTCCGGTGGTCACGGATCGCTGATAGAGGCAGGACCCGGCTGACAAGGGCCTTCGTAACGTGGATGCCGAGCGTGATCACCT
CCCGGCCGGCCAGCACACGCCACCGGCGCACCAGAAGGGAACGATCATGACAGCACAGCAGCACCCGGCCGTGTTCATCGGCCTTGACGTCGGCAAGGCC
GAGCACCACGCCGTGGCCCTCACCGCGGCCGGGAAAAAGGTCTACGACAAGGCCCTGCCCAACGACGAGACCCGCCTACGCGGCATCCTCGACGAGCTCG
CCCGCGCCCACGGGCCCGCGCTGCTCGTCGTCGATCAACCGGCCACGATCGGCGCCCTGCCCGTGGCCGTGGCCCAGGCCTGCGACGGCGTTGAGGTGGC
GTACCTGCCCGGGCTGGCGATGCGACGGATCGCTGACCTGCACCCCGGCTCGGCCAAGACCGACGCCAAGGACGCGGCGATCATCGCTGAAGCAGCCCGC
ACGATGCCCCATACGCTGCGCTCCATCCGAGTCGATGAGGAACAGATCGCCGAGCTGGCCATGCTCGCCGGGTTCGATGACGACCTCGCCGCGCAGATCA
CCGCGACCTCGAACCGGCTGCGCGGACTCCTCACCCAGATCCACCCCGCGCTCGAGCGCGTGCTCGGGCCCAGGATCACCCACCCCGCCGTGGCAGACCT
TCTCGGCCGCTACCCCACCCCGGCACAGCTCAGAACGGCTGGGCCGGGGCATGTGCGGGCCAGGCTGCGCAAGCACGCCCCACGCCTGGCCGCTTCTCTC
ACGGAACAGATCTTCCAAGCCCTGGACGAGCAGTCCGTGGTCGTGGCCGGCACGCAGGCCGCGGCCACCGTGGTCCCGATCCTGGCAGAACAGCTCGCCG
GCCTGACCCGTCAGCGGGCCGGCCTGGCCTCCCAGGTGGAGGCTGCAGTGGAGGCCCACCCTCTTCACCCGGTCCTGATCTCGATGCCCGGAGTAGGGAT
CAGGACCGCCGCACGCATCCTCACTGAAGTTGTGGGCAAGGACTTCGTCGATGCCGGGCATCTGGCCTCCTACGCCGGGATCGCCCCGGTCACCCGACGC
TCCGGGACCTCGATCCGCGGAGAGCACGTAGCCCGGGGCGGGAACAAGCGACTGAAGCGGGCCCTGTTCCTCTCAGCGTTCGCTTCGCTGTCACACCCGC
CTTCCAGGGCGTACTACGACCGCAAACGAGCCCAGGGCAAACGCCACAACCAGGCGCTGATCGCGCTGGCCCGGCGCCGCACGGACGTGCTCTACGCGAT
GCTCCGCGATGGCACCCTGTATCAAGATCCGACCGCCCCGCCAGCACCATCATCAGTCGCTCTCGCGGCTTGACGAAAACCATAGAGGCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1227 bp408 aa2471473+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTAQQHPAVFIGLDVGKAEHHAVALTAAGKKVYDKALPNDETRLRGILDELARAHGPALLVVDQPATIGALPVAVAQACDGVEVAYLPGLAMRRIADLHP
GSAKTDAKDAAIIAEAARTMPHTLRSIRVDEEQIAELAMLAGFDDDLAAQITATSNRLRGLLTQIHPALERVLGPRITHPAVADLLGRYPTPAQLRTAGP
GHVRARLRKHAPRLAASLTEQIFQALDEQSVVVAGTQAAATVVPILAEQLAGLTRQRAGLASQVEAAVEAHPLHPVLISMPGVGIRTAARILTEVVGKDF
VDAGHLASYAGIAPVTRRSGTSIRGEHVARGGNKRLKRALFLSAFASLSHPPSRAYYDRKRAQGKRHNQALIALARRRTDVLYAMLRDGTLYQDPTAPPA
PSSVALAA

 

Blast result :
Comments
ISMlu12 is 81% aa similar to ISArsp5.
Empty site in Micrococcus luteus strain SGAir0127 (CP025616.1).
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.