ISMlu8

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001628 ND Micrococcus luteus
Micrococcus luteus NCTC 2665
DNA section
IS Length : 1117 bp

Ends


IR Length : 21/30

IRL : TGTTGTGGGGCATGAGGTTCTTGGCACGAGGGCCGGGCTGAGATGAGACG
IRR : TGTAGGAGGTCATGACGTTGTTGACTCGGGCCGGGGCCAGTGAGGCCGGA

Insertion site


Left flankDirect repeatRight flankDR Length
TGCACCTCAGCCTAGCGACGCCCCGGA6

DNA sequence

TGTTGTGGGGCATGAGGTTCTTGGCACGAGGGCCGGGCTGAGATGAGACGAGTGGGCCTCTCCCGCAGGATGGAAGTTCCTACACCACCCACCTGCCCGA
AAAGAGACCCACTCATGACTCACGCTAATGCACCCCTGACTCCCACCGGCCGTCTCAGGATGGTCCACCGCCACCTGCACGACGGGATCCCACAGGCGCA
CGTGGCCGCCGAGTTCCGGGTGAGCCGGCCCACGGTGGCCACCTGGGTGGCCCGCTACCGTGCCGAAGGCGAGGCCGGCCTTCAGGACCTGCCCAGCCGG
CCGCACCGTTCACCTGCCCAGCTCGACCCCGAGGTGGTGGCCCAGATCCAGACCCTGCGTCGCAGGGAGAAGTGGTCGGCCCGCCGGATCCATCACCACC
TCGTCTCTGAAGGCCACCGGGTGTGCCTCCGAACGGTGGGCAGGTGGCTGCACCGGCTGGGCATCTCCCGGTTGCCAGACCTCGCGCCCACGGGTGAGGA
CCTGCGCCAACGACCGCAGAAGATCACCGCCCGCGGCCCGGGGCACATGGTGCACCTGGACGTGAAGAAGATCGGGCGCATCCCCGAGGGGGGCGGCTGG
CGTGCTCACGGACGGGACTCCGAGAACGCGCGAGCAGCCAAGCGCGGGCCTGGCCGGCGGGTCGGGTACACCTACCTGCACTCGGCGATCGACGGGTACA
CCCGCCTGGCGTACACCGAGGCGTTGGAGGATGAGAAAGCGGTGACCACGATCGGGTTCTTCTGCCGGGCGAGGGCGTTCTTCGCCGCCCACGGCATCAC
CGTGGACCGGGTGGTCACGGACAACGGGAACAACTATCGGGCCGCGGAGTTCACCGCCAAGGTGGTCTCGCTCGGGGGCCGGCACCACCGGATCCGCCCA
TACACGCCCCGCCATAACGGGAAGGTCGAACGCTACAACCGGCTGATGGTCGATGAGGTCCTCTACGCCCGCCCGTATACCTCAGAGACAGCTCGGCGTG
AGGCGTTGGCAGTGTGGGTGAACCACTACAACTACCATCGGCCTCATACCTCCTGCGGAGACGCTCCTCCGGCCTCACTGGCCCCGGCCCGAGTCAACAA
CGTCATGACCTCCTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1003 bp335 aa1151117+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTHANAPLTPTGRLRMVHRHLHDGIPQAHVAAEFRVSRPTVATWVARYRAEGEAGLQDLPSRPHRSPAQLDPEVVAQIQTLRRREKWSARRIHHHLVSEG
HRVCLRTVGRWLHRLGISRLPDLAPTGEDLRQRPQKITARGPGHMVHLDVKKIGRIPEGGGWRAHGRDSENARAAKRGPGRRVGYTYLHSAIDGYTRLAY
TEALEDEKAVTTIGFFCRARAFFAAHGITVDRVVTDNGNNYRAAEFTAKVVSLGGRHHRIRPYTPRHNGKVERYNRLMVDEVLYARPYTSETARREALAV
WVNHYNYHRPHTSCGDAPPASLAPARVNNVMTSYT

 

Blast result :
Comments
ISMlu8 is 85% aa similar to ISKrh2.
The STOP codon is done by the insertion site.
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.