ISMlu7
- Family IS30
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001628 | ND | Micrococcus luteus | Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1505 bp
Ends
IR Length : 24/28
IRL : GGTGGATTCAATCGGTCGTCGCAACACCCTCTCGGAATCACTGGAGGTAT
IRR : GGCGGGTTCAACCGGTCGTTGCAACACCGTGCGTTGAGAGCGAGCGTAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GACGCAGGGTCT | CGA | TTCACGTCCATT | 3 |
DNA sequence
GGTGGATTCAATCGGTCGTCGCAACACCCTCTCGGAATCACTGGAGGTATGGGCGATGGCAAGCAAGGACTGGGCGAGGAAGATCAGTGACGTGCCCGAG
GGGACACGTCGGCAGTGGAGAGCGGATCGGGCCTTGCGGGCCCCGATGCGCTCTCCTGGCAGGCCGCAGCCCTCACGGGAGGTCCAACGCCAGTTCTGGC
GTGTAATCGCCACCGGTGTCACCACGGTCGAGGCATCCCTGACTGTGGGCGTGTCCTGGCCCGTCGGGGCGCGCTGGTTCCGTCACGCTGGCGGGATGAC
CCCGCTGTCCTTAGCCGAGCCCACCGGCCGGTATCTGTCCTTCGCTGAGCGTGAAGAGATCGCAATCCTCCATGCCCAGGGCCAGGGGGTCCGTCAGATC
GCACGCACGCTGGGACGTGACCCGGGCACGATCAGCCGTGAGCTGCGCCGTAACTGCGCCACTCGTTCCGGGAAGCAGGAGTACCGGGCCACGGTGGCGC
AGTGGAAGGCCCAGGAAGCTGCCAGGCGGCCCAAGCCGGCGAAGCTGGCCACGAACCAGCGACTGCACGACTACGTCCAGGCACGCCTGAACGGGGTGGT
CCTGGGCCCCGATGGCGTGGCCGTGCCGGGACCGGTCGGGCCCGGTTTCAAGGGGCGGAAGATGAAACCGCGCCGGGCGGACCGGCGGTGGTCCACGGCG
TGGAGCCCTGAGCAGATCAGCCACCGGCTGCGCCTGGAGTTCCCGGATGATGTGTCCATGCGGATCTCTCATGAAGCGATCTATCAGTCCCTGTTCATCC
AGGGGCGTGGGGCGCTCAAGCGTGAACTCGTCGCGTGCCTGCGTACCGGGCGGGCTCTGCGCGAGCCGCGGGCACGTACCCGGAACAAGCCCCAGGGCCA
CGTCACCGAGGACGTGGTGTTCAGCAAGCGCCCACCCGAGGCCGCTGATCGTGCTGTGCCCGGGCACTGGGAAGGGGACCTGATCATCGGGACCGAGCGT
TCAGCGATCGGGACTCTGGCCGAGCGCAAGAGCCGGGCCACGATCCTGGTCCACTTGCCCCGCCTGGAGGGATGGGGTGAGCGGCCGCCGGTGAAGAACG
GGCCGTCGCTGGGTGGGTACGGGGCTGAGGCGATGACCGCGGCCCTGATCAAGGCGATGGCGACGGTGCCGCAGCAGCTGCGTCAGAGCTTGACGTGGGA
TCGGGGCAAGGAGCTGGCCGGGCATGTCCAGTTCACGATGGCCACGGGCACGAAGGTGTTCTTCGCTGACCCCCACTCGCCGTGGCAGCGGCCGACGAAC
GAGAACACGAACGGGGTGCTGCGGCAGTACTTCCCCAAGGGCACGGACCTGTCGAGATGGTCGGCCGAGGACCTCGCAGCAGTCGCGTACACGCTGAACA
ACAGGCCCAGGAAGGTCCTGGACTGGAAGACTCCCGCGGAGGTCTTCGCCGAGCAGCTACGCTCGCTCTCAACGCACGGTGTTGCAACGACCGGTTGAAC
CCGCC
GGGACACGTCGGCAGTGGAGAGCGGATCGGGCCTTGCGGGCCCCGATGCGCTCTCCTGGCAGGCCGCAGCCCTCACGGGAGGTCCAACGCCAGTTCTGGC
GTGTAATCGCCACCGGTGTCACCACGGTCGAGGCATCCCTGACTGTGGGCGTGTCCTGGCCCGTCGGGGCGCGCTGGTTCCGTCACGCTGGCGGGATGAC
CCCGCTGTCCTTAGCCGAGCCCACCGGCCGGTATCTGTCCTTCGCTGAGCGTGAAGAGATCGCAATCCTCCATGCCCAGGGCCAGGGGGTCCGTCAGATC
GCACGCACGCTGGGACGTGACCCGGGCACGATCAGCCGTGAGCTGCGCCGTAACTGCGCCACTCGTTCCGGGAAGCAGGAGTACCGGGCCACGGTGGCGC
AGTGGAAGGCCCAGGAAGCTGCCAGGCGGCCCAAGCCGGCGAAGCTGGCCACGAACCAGCGACTGCACGACTACGTCCAGGCACGCCTGAACGGGGTGGT
CCTGGGCCCCGATGGCGTGGCCGTGCCGGGACCGGTCGGGCCCGGTTTCAAGGGGCGGAAGATGAAACCGCGCCGGGCGGACCGGCGGTGGTCCACGGCG
TGGAGCCCTGAGCAGATCAGCCACCGGCTGCGCCTGGAGTTCCCGGATGATGTGTCCATGCGGATCTCTCATGAAGCGATCTATCAGTCCCTGTTCATCC
AGGGGCGTGGGGCGCTCAAGCGTGAACTCGTCGCGTGCCTGCGTACCGGGCGGGCTCTGCGCGAGCCGCGGGCACGTACCCGGAACAAGCCCCAGGGCCA
CGTCACCGAGGACGTGGTGTTCAGCAAGCGCCCACCCGAGGCCGCTGATCGTGCTGTGCCCGGGCACTGGGAAGGGGACCTGATCATCGGGACCGAGCGT
TCAGCGATCGGGACTCTGGCCGAGCGCAAGAGCCGGGCCACGATCCTGGTCCACTTGCCCCGCCTGGAGGGATGGGGTGAGCGGCCGCCGGTGAAGAACG
GGCCGTCGCTGGGTGGGTACGGGGCTGAGGCGATGACCGCGGCCCTGATCAAGGCGATGGCGACGGTGCCGCAGCAGCTGCGTCAGAGCTTGACGTGGGA
TCGGGGCAAGGAGCTGGCCGGGCATGTCCAGTTCACGATGGCCACGGGCACGAAGGTGTTCTTCGCTGACCCCCACTCGCCGTGGCAGCGGCCGACGAAC
GAGAACACGAACGGGGTGCTGCGGCAGTACTTCCCCAAGGGCACGGACCTGTCGAGATGGTCGGCCGAGGACCTCGCAGCAGTCGCGTACACGCTGAACA
ACAGGCCCAGGAAGGTCCTGGACTGGAAGACTCCCGCGGAGGTCTTCGCCGAGCAGCTACGCTCGCTCTCAACGCACGGTGTTGCAACGACCGGTTGAAC
CCGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1443 bp | 480 aa | 56 | 1498 | + | No |
Chemistry : DDE
ORF sequence :
MASKDWARKISDVPEGTRRQWRADRALRAPMRSPGRPQPSREVQRQFWRVIATGVTTVEASLTVGVSWPVGARWFRHAGGMTPLSLAEPTGRYLSFAERE
EIAILHAQGQGVRQIARTLGRDPGTISRELRRNCATRSGKQEYRATVAQWKAQEAARRPKPAKLATNQRLHDYVQARLNGVVLGPDGVAVPGPVGPGFKG
RKMKPRRADRRWSTAWSPEQISHRLRLEFPDDVSMRISHEAIYQSLFIQGRGALKRELVACLRTGRALREPRARTRNKPQGHVTEDVVFSKRPPEAADRA
VPGHWEGDLIIGTERSAIGTLAERKSRATILVHLPRLEGWGERPPVKNGPSLGGYGAEAMTAALIKAMATVPQQLRQSLTWDRGKELAGHVQFTMATGTK
VFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAEDLAAVAYTLNNRPRKVLDWKTPAEVFAEQLRSLSTHGVATTG
EIAILHAQGQGVRQIARTLGRDPGTISRELRRNCATRSGKQEYRATVAQWKAQEAARRPKPAKLATNQRLHDYVQARLNGVVLGPDGVAVPGPVGPGFKG
RKMKPRRADRRWSTAWSPEQISHRLRLEFPDDVSMRISHEAIYQSLFIQGRGALKRELVACLRTGRALREPRARTRNKPQGHVTEDVVFSKRPPEAADRA
VPGHWEGDLIIGTERSAIGTLAERKSRATILVHLPRLEGWGERPPVKNGPSLGGYGAEAMTAALIKAMATVPQQLRQSLTWDRGKELAGHVQFTMATGTK
VFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAEDLAAVAYTLNNRPRKVLDWKTPAEVFAEQLRSLSTHGVATTG
Blast result :
Comments
ISMlu7 is 84% aa similar to ISPfr9.
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.