ISMlu2
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001628 | ND | Micrococcus luteus | Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1422 bp
Ends
IR Length : 17/28
IRL : GAGTTGAGTCCCGCATAGTGGTATAGCGCCCGGTGGTCGGGCGTGTCGTC
IRR : GTCAAGCCCCTCGTGATGGTGTAGCGGTCTGATCCTTCATGGGGGTCAGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCACCGACGC | CGAACTG | GCCGAGGCGT | 8 |
DNA sequence
GAGTTGAGTCCCGCATAGTGGTATAGCGCCCGGTGGTCGGGCGTGTCGTCTCAGACGTGGACGCGGCCACCGTGTGATCCGTCGAGTCAACCTTCCACAG
AATCCTCGAATGGAGTCATCACGATGACCGCTCCTCATATTCTCGACCCTGCCGGCCTGCTCGGAGAAGCCCTGTCTGAAGCGTCCCCGGACATGATGCG
CCATCTGCTGCAGACCATGATCAACACCTTGCTGTCCGCGGATGCCGACGCGGTGGTCGGTGCCGAATGGGGCAAGCCCAGCTCCTCGCGCACTGCTCGG
CGGAACGGGTACCGCCACCGGGACCTGGACACCCGGGTCGGCACCCTGGACGTGGCCATCCCCAAGCTCAGATCGGGCACGTACTTCCCGGACTGGCTAC
TTGAACGCAGGAAGAGAGCGGAGTCGGCGCTGATCACCGTGGTCGCTGACTGCTACCTCGCCGGGGTCTCGACCCAACGGATGGACAAGCTGGTCAAGAC
TCTGGGCGTCAACGCCCTGTCCAAGTCCCAAGTCTCCCGGATGGCCACCGAGCTCGACGAGCAGGTCGAGGCCTTCCGCCACCGCCCGCTCGGGGTGGCC
GGCCCGTTCACGTTCGTGGCCGCCGATGCGCTGAGCATGAAGGTCCGCGAGGGCGGGCGCGTGGTCAACGCCGTGGTGCTGCTGGCCACCGGGGTCAACG
CTGACGGCCACCGCGAGGTCCTGGGCCTGCGGGTCGCCACCTCGGAGACCGGGGCGGCGTGGAACGAGTTCTTCGCCGACCTGGTCGCCCGCGGCCTGGC
CGGGGTCCGGTTGGTCACTTCTGACGCCCACACCGGACTCAAGGACGCCATCGCGGCGAACCTGCCCGGAGCGACGTGGCAGCGCTGCCGCACCCATTAC
GCGGCGAACCTGATGGGCATCACCCCGAAGAACATGTGGCCGGCCGTGAAAGCCATGCTGCACTCGGTCTATGACCAGCCCGATGCGGCCAGCGTGCACG
CGCAGTTCGACCGGCTCCTGGACTACGTGAGCGAGAAGCTGCCCACCGTGGCTGAGCACCTCGACGCCGCCCGGGCGGACATCCTGGCCTTCACCACGTT
CCCGAAGGACGTCTGGACGCAGGTCTGGTCGAACAACCCGGCCGAGCGGCTCAACCGGGAGATCCGCCGTCGCACCGACGCGGTGGGCATCTTCCCCAAC
CGGGCGGCCATCGTCAGGCTAGTGGGTGCGGTGCTGGCCGAGCAGACCGATGAATGGGCCGAGGGTCGACGCTACCTCGGTCTCGAAGTCCTGGCCCGCT
GCAGGCTCACCACCGTGACCAACACCGGAGACGAGGTGGACCCCGACACCGAACTCACCCTCGGCCTCAGCGCCTGACCCCCATGAAGGATCAGACCGCT
ACACCATCACGAGGGGCTTGAC
AATCCTCGAATGGAGTCATCACGATGACCGCTCCTCATATTCTCGACCCTGCCGGCCTGCTCGGAGAAGCCCTGTCTGAAGCGTCCCCGGACATGATGCG
CCATCTGCTGCAGACCATGATCAACACCTTGCTGTCCGCGGATGCCGACGCGGTGGTCGGTGCCGAATGGGGCAAGCCCAGCTCCTCGCGCACTGCTCGG
CGGAACGGGTACCGCCACCGGGACCTGGACACCCGGGTCGGCACCCTGGACGTGGCCATCCCCAAGCTCAGATCGGGCACGTACTTCCCGGACTGGCTAC
TTGAACGCAGGAAGAGAGCGGAGTCGGCGCTGATCACCGTGGTCGCTGACTGCTACCTCGCCGGGGTCTCGACCCAACGGATGGACAAGCTGGTCAAGAC
TCTGGGCGTCAACGCCCTGTCCAAGTCCCAAGTCTCCCGGATGGCCACCGAGCTCGACGAGCAGGTCGAGGCCTTCCGCCACCGCCCGCTCGGGGTGGCC
GGCCCGTTCACGTTCGTGGCCGCCGATGCGCTGAGCATGAAGGTCCGCGAGGGCGGGCGCGTGGTCAACGCCGTGGTGCTGCTGGCCACCGGGGTCAACG
CTGACGGCCACCGCGAGGTCCTGGGCCTGCGGGTCGCCACCTCGGAGACCGGGGCGGCGTGGAACGAGTTCTTCGCCGACCTGGTCGCCCGCGGCCTGGC
CGGGGTCCGGTTGGTCACTTCTGACGCCCACACCGGACTCAAGGACGCCATCGCGGCGAACCTGCCCGGAGCGACGTGGCAGCGCTGCCGCACCCATTAC
GCGGCGAACCTGATGGGCATCACCCCGAAGAACATGTGGCCGGCCGTGAAAGCCATGCTGCACTCGGTCTATGACCAGCCCGATGCGGCCAGCGTGCACG
CGCAGTTCGACCGGCTCCTGGACTACGTGAGCGAGAAGCTGCCCACCGTGGCTGAGCACCTCGACGCCGCCCGGGCGGACATCCTGGCCTTCACCACGTT
CCCGAAGGACGTCTGGACGCAGGTCTGGTCGAACAACCCGGCCGAGCGGCTCAACCGGGAGATCCGCCGTCGCACCGACGCGGTGGGCATCTTCCCCAAC
CGGGCGGCCATCGTCAGGCTAGTGGGTGCGGTGCTGGCCGAGCAGACCGATGAATGGGCCGAGGGTCGACGCTACCTCGGTCTCGAAGTCCTGGCCCGCT
GCAGGCTCACCACCGTGACCAACACCGGAGACGAGGTGGACCCCGACACCGAACTCACCCTCGGCCTCAGCGCCTGACCCCCATGAAGGATCAGACCGCT
ACACCATCACGAGGGGCTTGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1254 bp | 417 aa | 124 | 1377 | + | No |
Chemistry : DDE
ORF sequence :
MTAPHILDPAGLLGEALSEASPDMMRHLLQTMINTLLSADADAVVGAEWGKPSSSRTARRNGYRHRDLDTRVGTLDVAIPKLRSGTYFPDWLLERRKRAE
SALITVVADCYLAGVSTQRMDKLVKTLGVNALSKSQVSRMATELDEQVEAFRHRPLGVAGPFTFVAADALSMKVREGGRVVNAVVLLATGVNADGHREVL
GLRVATSETGAAWNEFFADLVARGLAGVRLVTSDAHTGLKDAIAANLPGATWQRCRTHYAANLMGITPKNMWPAVKAMLHSVYDQPDAASVHAQFDRLLD
YVSEKLPTVAEHLDAARADILAFTTFPKDVWTQVWSNNPAERLNREIRRRTDAVGIFPNRAAIVRLVGAVLAEQTDEWAEGRRYLGLEVLARCRLTTVTN
TGDEVDPDTELTLGLSA
SALITVVADCYLAGVSTQRMDKLVKTLGVNALSKSQVSRMATELDEQVEAFRHRPLGVAGPFTFVAADALSMKVREGGRVVNAVVLLATGVNADGHREVL
GLRVATSETGAAWNEFFADLVARGLAGVRLVTSDAHTGLKDAIAANLPGATWQRCRTHYAANLMGITPKNMWPAVKAMLHSVYDQPDAASVHAQFDRLLD
YVSEKLPTVAEHLDAARADILAFTTFPKDVWTQVWSNNPAERLNREIRRRTDAVGIFPNRAAIVRLVGAVLAEQTDEWAEGRRYLGLEVLARCRLTTVTN
TGDEVDPDTELTLGLSA
Blast result :
Comments
ISMlu2 is 96% aa similar to ISMlu1.
ISMlu2 is inserted into an IS3 family member.
ISMlu2 is inserted into an IS3 family member.
References
1] ISfinder submission (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.