ISLbp5
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000348 | ND | Leptospira borgpetersenii | Leptospira borgpetersenii serovar Hardjo-bovis L550 |
DNA section
IS Length : 862 bp
Ends
IR Length : 15
IRL : GAGCCCGTCTCAAAACTGGTTGTACTTTTGAATCGTAATTATTTACTTGT
IRR : GAGCCCGTCTCAAAAATATCTATTAAAGAAATTGAAAACAATAGTGCTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGGGGCGCCATATCA | TGATATGGCGCCCCA | 0 |
DNA sequence
GAGCCCGTCTCAAAACTGGTTGTACTTTTGAATCGTAATTATTTACTTGTGAAATGGACAAATATTATTCAGAGATCCCCGATGGACTTTGGGAAAAAAT
AGAACCATTAATCCCAAAAGTTAGGGCAAATCTCCAAGGAGGTCGCAATCGATTACCTACAAGAGTGGTAATGGCGGGGATCATCTATCGAATGAAAACA
GGCTGTCAGTGGCGGGCAATTCCGAGTAACTTCGGATCTGGTCAAACTTATCACAGAAGATTCCAAGAATGGGAAAGAGCGGGAGTATTCAAAAAGGTTT
ATAAATCTATTTTAAAATATTATGATGTGAAGAATAAGATAGCATGGGACTGGGCTTCGATGGATTCCGCAATTGTTAAAGCTCCCAAAGGGGGAGTTTA
ACCGGCAAAAACCCTACAGACCGCGCCAAATTAGGGGTTAGACGGCATATTCTTACGGATGGAAATGGAATTCCATTGGCCATAACATTGAGTGGAGCCA
ATGTTCATGACAAGCATAACGTAAAAGAGACTTTAAATTCAATCCTGATTTTTTCCGGTAGAAGAAAAAAGAAACCAAAACATCTCTGTCTTGATAAAGG
ATATGACTTTAAAGATACGGAAAAATTAATTAGAAGAAGAAATATCCGGCCTCACATTCGAAGAAGAGGCGAGAAACCATTGATCGGTAAATATAAAGGA
AAGCCTCGAAGATGGGTCGTTGAAAGAACGAACAGTTGGCACAATCGATTCAGGGCTATCCTTATCCGGTGGGAAAGAAAATCTGAAAATTATATGGCTT
CTCTTTACCTCGCGAGCACTATTGTTTTCAATTTCTTTAATAGATATTTTTGAGACGGGCTC
AGAACCATTAATCCCAAAAGTTAGGGCAAATCTCCAAGGAGGTCGCAATCGATTACCTACAAGAGTGGTAATGGCGGGGATCATCTATCGAATGAAAACA
GGCTGTCAGTGGCGGGCAATTCCGAGTAACTTCGGATCTGGTCAAACTTATCACAGAAGATTCCAAGAATGGGAAAGAGCGGGAGTATTCAAAAAGGTTT
ATAAATCTATTTTAAAATATTATGATGTGAAGAATAAGATAGCATGGGACTGGGCTTCGATGGATTCCGCAATTGTTAAAGCTCCCAAAGGGGGAGTTTA
ACCGGCAAAAACCCTACAGACCGCGCCAAATTAGGGGTTAGACGGCATATTCTTACGGATGGAAATGGAATTCCATTGGCCATAACATTGAGTGGAGCCA
ATGTTCATGACAAGCATAACGTAAAAGAGACTTTAAATTCAATCCTGATTTTTTCCGGTAGAAGAAAAAAGAAACCAAAACATCTCTGTCTTGATAAAGG
ATATGACTTTAAAGATACGGAAAAATTAATTAGAAGAAGAAATATCCGGCCTCACATTCGAAGAAGAGGCGAGAAACCATTGATCGGTAAATATAAAGGA
AAGCCTCGAAGATGGGTCGTTGAAAGAACGAACAGTTGGCACAATCGATTCAGGGCTATCCTTATCCGGTGGGAAAGAAAATCTGAAAATTATATGGCTT
CTCTTTACCTCGCGAGCACTATTGTTTTCAATTTCTTTAATAGATATTTTTGAGACGGGCTC
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
348 bp | 115 aa | 54 | 401 | + | No |
Description : First part of the transposase
ORF sequence :
MDKYYSEIPDGLWEKIEPLIPKVRANLQGGRNRLPTRVVMAGIIYRMKTGCQWRAIPSNFGSGQTYHRRFQEWERAGVFKKVYKSILKYYDVKNKIAWDW
ASMDSAIVKAPKGGV
ASMDSAIVKAPKGGV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
473 bp | 157 aa | 381 | 853 | + | No |
Description : Second part of the transposase
ORF sequence :
SSQRGSLTGKNPTDRAKLGVRRHILTDGNGIPLAITLSGANVHDKHNVKETLNSILIFSGRRKKKPKHLCLDKGYDFKDTEKLIRRRNIRPHIRRRGEKP
LIGKYKGKPRRWVVERTNSWHNRFRAILIRWERKSENYMASLYLASTIVFNFFNRYF
LIGKYKGKPRRWVVERTNSWHNRFRAILIRWERKSENYMASLYLASTIVFNFFNRYF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
800 bp | 266 aa | 54 | 853 | + | Yes |
Chemistry : DDE
ORF sequence :
MDKYYSEIPDGLWEKIEPLIPKVRANLQGGRNRLPTRVVMAGIIYRMKTGCQWRAIPSNFGSGQTYHRRFQEWERAGVFKKVYKSILKYYDVKNKIAWDW
ASMDSAIVKAPKGGSLTGKNPTDRAKLGVRRHILTDGNGIPLAITLSGANVHDKHNVKETLNSILIFSGRRKKKPKHLCLDKGYDFKDTEKLIRRRNIRP
HIRRRGEKPLIGKYKGKPRRWVVERTNSWHNRFRAILIRWERKSENYMASLYLASTIVFNFFNRYF
ASMDSAIVKAPKGGSLTGKNPTDRAKLGVRRHILTDGNGIPLAITLSGANVHDKHNVKETLNSILIFSGRRKKKPKHLCLDKGYDFKDTEKLIRRRNIRP
HIRRRGEKPLIGKYKGKPRRWVVERTNSWHNRFRAILIRWERKSENYMASLYLASTIVFNFFNRYF
Blast result :
Comments
ISLbp5 is 69% aa similar to ISMba5.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder submission (2018)
2] Bulach,D.M., Zuerner,R.L., Wilson,P., Seemann,T., McGrath,A., Cullen,P.A., Davis,J., Johnson,M., Kuczek,E., Alt,D.P., Peterson-Burch,B., Coppel,R.L., Rood,J.I., Davies,J.K. and Adler,B. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (39), 14560-14565 .
2] Bulach,D.M., Zuerner,R.L., Wilson,P., Seemann,T., McGrath,A., Cullen,P.A., Davis,J., Johnson,M., Kuczek,E., Alt,D.P., Peterson-Burch,B., Coppel,R.L., Rood,J.I., Davies,J.K. and Adler,B. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (39), 14560-14565 .