ISLbp3
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP000348 | ND | Leptospira borgpetersenii | Leptospira borgpetersenii serovar Hardjo-bovis L550 |
DNA section
IS Length : 1115 bp
Ends
IR Length : 25/32
IRL : ACGTGAGTTCGGCGTAAGAAGGAAAAAAGAGTAAAAATCTTGTACTGAAA
IRR : ACGTGAGTTCGGCCTAAGGAGAAAGTAGAAGTTGTAAATTGTCTTTGGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGTTTTTAATTA | TATTTATAAA | 0 |
DNA sequence
ACGTGAGTTCGGCGTAAGAAGGAAAAAAGAGTAAAAATCTTGTACTGAAAAGCGCCAGATCGCATATTGAACCAAATTTCCGACAAGAAAAGGTACAATA
TGGATCTGACAGAGATATTTTGCGCAATAGACGATTATTGTACACAACAAAAAATAAACTGGAACGGGAAAATACTTTCGTCCGGTGGTTCGAAAAAGGA
ACCGTAAATTTCAACTCAGCCTGAGTGAAGTAGCAACAATCGTAGTTTATTTCCATCTTTCTCATTATAGAGAATTTAAAAATTATTATTTGATAGAAAT
AAAAAAGAATCTGAAATCTGAATTTCCAAAAGCTGTAAGTTACAATCGTTTTGTCGAGCTGATGCCTAACGCGTTAACCGTCATCGATTCGTTTCTGTCA
AATTCTTGTTTAGAAAAGTGTTCCGGAATATCGTTCATTGATTCCACGATTCTCAAAGTATGCGACAACAGAAGAATCCATTCTCATAAGAACCTGTCCT
TCACCAATTTTTTCTTATGGAAAAAACCGGTGAAGGGCAGAACCTTGCAGCTTGATTATTCTGATAATGTAAACTGGAGTTTTAAAACGCGCTGTAAGGT
ATTTAAAGACATTGCGCAGCGAGGGAAATCAAGCACAGGCTGGTTTTACGGCTTTAAATTGCATTTAATCATAAATGATCAAGGTGAATTATTATCATTT
ATGGTCACTCCTGGAAATGTGGACGACAGGAATTTGAAAGTGATCTTTCCACTTTCTAAAAATATTTACGGTAAACTTTTCGGAGATAGAGGTTACATCA
GTCAATCTCTGTTTGAAAGTCTTTATGAAAAGGGAATTCAACTCATTACAAAACTTAAAAAGAATATGAGAAATAAATTAATACCCTTCGTTGATAAAAT
CCTTTTAAGGAAAAGAGCTATCATTGAATCCGTTAATGATGAACTTAAAAATATCTGTCAGATTCAACATACTAGGCATCGTAGTTTTTTCAATTGGGCC
GTTAATCTATTAAGCGGGTTAGTCGCATTTTCATTTTTTCCAAAAAAACCTTCTTTGAATTTGAGATCCAAAGACAATTTACAACTTCTACTTTCTCCTT
AGGCCGAACTCACGT
TGGATCTGACAGAGATATTTTGCGCAATAGACGATTATTGTACACAACAAAAAATAAACTGGAACGGGAAAATACTTTCGTCCGGTGGTTCGAAAAAGGA
ACCGTAAATTTCAACTCAGCCTGAGTGAAGTAGCAACAATCGTAGTTTATTTCCATCTTTCTCATTATAGAGAATTTAAAAATTATTATTTGATAGAAAT
AAAAAAGAATCTGAAATCTGAATTTCCAAAAGCTGTAAGTTACAATCGTTTTGTCGAGCTGATGCCTAACGCGTTAACCGTCATCGATTCGTTTCTGTCA
AATTCTTGTTTAGAAAAGTGTTCCGGAATATCGTTCATTGATTCCACGATTCTCAAAGTATGCGACAACAGAAGAATCCATTCTCATAAGAACCTGTCCT
TCACCAATTTTTTCTTATGGAAAAAACCGGTGAAGGGCAGAACCTTGCAGCTTGATTATTCTGATAATGTAAACTGGAGTTTTAAAACGCGCTGTAAGGT
ATTTAAAGACATTGCGCAGCGAGGGAAATCAAGCACAGGCTGGTTTTACGGCTTTAAATTGCATTTAATCATAAATGATCAAGGTGAATTATTATCATTT
ATGGTCACTCCTGGAAATGTGGACGACAGGAATTTGAAAGTGATCTTTCCACTTTCTAAAAATATTTACGGTAAACTTTTCGGAGATAGAGGTTACATCA
GTCAATCTCTGTTTGAAAGTCTTTATGAAAAGGGAATTCAACTCATTACAAAACTTAAAAAGAATATGAGAAATAAATTAATACCCTTCGTTGATAAAAT
CCTTTTAAGGAAAAGAGCTATCATTGAATCCGTTAATGATGAACTTAAAAATATCTGTCAGATTCAACATACTAGGCATCGTAGTTTTTTCAATTGGGCC
GTTAATCTATTAAGCGGGTTAGTCGCATTTTCATTTTTTCCAAAAAAACCTTCTTTGAATTTGAGATCCAAAGACAATTTACAACTTCTACTTTCTCCTT
AGGCCGAACTCACGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 918 bp | 305 aa | 185 | 1102 | + | No |
Chemistry : DDE
ORF sequence :
MVRKRNRKFQLSLSEVATIVVYFHLSHYREFKNYYLIEIKKNLKSEFPKAVSYNRFVELMPNALTVIDSFLSNSCLEKCSGISFIDSTILKVCDNRRIHS
HKNLSFTNFFLWKKPVKGRTLQLDYSDNVNWSFKTRCKVFKDIAQRGKSSTGWFYGFKLHLIINDQGELLSFMVTPGNVDDRNLKVIFPLSKNIYGKLFG
DRGYISQSLFESLYEKGIQLITKLKKNMRNKLIPFVDKILLRKRAIIESVNDELKNICQIQHTRHRSFFNWAVNLLSGLVAFSFFPKKPSLNLRSKDNLQ
LLLSP
HKNLSFTNFFLWKKPVKGRTLQLDYSDNVNWSFKTRCKVFKDIAQRGKSSTGWFYGFKLHLIINDQGELLSFMVTPGNVDDRNLKVIFPLSKNIYGKLFG
DRGYISQSLFESLYEKGIQLITKLKKNMRNKLIPFVDKILLRKRAIIESVNDELKNICQIQHTRHRSFFNWAVNLLSGLVAFSFFPKKPSLNLRSKDNLQ
LLLSP
Blast result :
Comments
ISLbp3 is 66% aa similar to IS195.
References
1] ISfinder submission (2018)
2] Bulach,D.M., Zuerner,R.L., Wilson,P., Seemann,T., McGrath,A., Cullen,P.A., Davis,J., Johnson,M., Kuczek,E., Alt,D.P., Peterson-Burch,B., Coppel,R.L., Rood,J.I., Davies,J.K. and Adler,B. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (39), 14560-14565 .
2] Bulach,D.M., Zuerner,R.L., Wilson,P., Seemann,T., McGrath,A., Cullen,P.A., Davis,J., Johnson,M., Kuczek,E., Alt,D.P., Peterson-Burch,B., Coppel,R.L., Rood,J.I., Davies,J.K. and Adler,B. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (39), 14560-14565 .