ISEfm1
- Family IS982
- Group
Isoform IS19Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF138282 | ND | Enterococcus faecium | Enterococcus faecium |
DNA section
IS Length : 1041 bp
Ends
IR Length : 22
IRL : ACCCGTGGTGCTAGTTAATTTTTTCCTAGAGGAAAATGTCTAAACATGTT
IRR : ACCCGTGGTGCTAGTTAATTTTAATATCCTAAAGAATATCTCAAAGTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCAAAATAT | ATCAATA | ATAAAATCGA | 7 |
DNA sequence
ACCCGTGGTGCTAGTTAATTTTTTCCTAGAGGAAAATGTCTAAACATGTTGGTAAATCAACAAAAAAACGCATATAGTAGTCTCAAAACTCCCAAGAAAT
GAGGACTACATATGCGTTCATCAAAATATACTGAACATTATACAGATACTTTTATAACATTCAAGGAAATTATGAGAACTGTTTCTAACATATACCACAA
TTGTGTACCAGATAAGATTAAAAACCGAAGAAATACTGATCAACTGAAGCAACGCGATACAGTGATTATTGCTTGTGTTATATGGGGCATAATTAATGGC
TATACTAGCCAAAGAGCCACGTATAGAGCGGTTTGTTCCGTCTTATTTCCTAATGGTGACTTTGCTAGTAGGAGTCGATTCACTCGCTTAAGTTCAAACT
TAGCTTACACTATCAAGATTATTCGATACTTTTTCATCAAGAAGCTCACCAAAGGTGAACTAGTCGGAATTATAGATAGTTTTCCTAGTCCATTATGTAA
ACCAGTTAGAAATAGACAAGCAAAACTATTGAATCAAATAGCCAAAGTTGGCTATAACTCAACAAAAAAGATCTTATTTTTATGGTCTTAAAATTCATAT
GATCGTTACTAAGACTGGCTTTCCGATTACTTACTCAATCACGAATCCAGGTGTCCATGACGTGAAAGTGTTAGAGACTTTATCGGAAGAAGCGAATCTT
CCCAATATCCTAGGGGACAAAGGATATATTAGCCATAAAATCCATGAAAAGCTTGCCCTTAAGGGCATTACTATATCCGTTCCACCACGTAAAAACATGG
ATAAATCAGAAAAACTAGACCACAGCTTACTTGGAAAACAAAGAAAAACAGTTGAGACTGTTTTTTCTTCCTTAGAAAAATTAGGTTGTCAAAATTTCAA
CTCACGTTCTGTTAAAGGGCTAGAGAGTAGATTTGAAAGCATATTACTGGCTTACAGTGTTCTATTAAGTCGAGCACAACGACGTTTTGAAGGAACTTTG
AGATATTCTTTAGGATATTAAAATTAACTAGCACCACGGGT
GAGGACTACATATGCGTTCATCAAAATATACTGAACATTATACAGATACTTTTATAACATTCAAGGAAATTATGAGAACTGTTTCTAACATATACCACAA
TTGTGTACCAGATAAGATTAAAAACCGAAGAAATACTGATCAACTGAAGCAACGCGATACAGTGATTATTGCTTGTGTTATATGGGGCATAATTAATGGC
TATACTAGCCAAAGAGCCACGTATAGAGCGGTTTGTTCCGTCTTATTTCCTAATGGTGACTTTGCTAGTAGGAGTCGATTCACTCGCTTAAGTTCAAACT
TAGCTTACACTATCAAGATTATTCGATACTTTTTCATCAAGAAGCTCACCAAAGGTGAACTAGTCGGAATTATAGATAGTTTTCCTAGTCCATTATGTAA
ACCAGTTAGAAATAGACAAGCAAAACTATTGAATCAAATAGCCAAAGTTGGCTATAACTCAACAAAAAAGATCTTATTTTTATGGTCTTAAAATTCATAT
GATCGTTACTAAGACTGGCTTTCCGATTACTTACTCAATCACGAATCCAGGTGTCCATGACGTGAAAGTGTTAGAGACTTTATCGGAAGAAGCGAATCTT
CCCAATATCCTAGGGGACAAAGGATATATTAGCCATAAAATCCATGAAAAGCTTGCCCTTAAGGGCATTACTATATCCGTTCCACCACGTAAAAACATGG
ATAAATCAGAAAAACTAGACCACAGCTTACTTGGAAAACAAAGAAAAACAGTTGAGACTGTTTTTTCTTCCTTAGAAAAATTAGGTTGTCAAAATTTCAA
CTCACGTTCTGTTAAAGGGCTAGAGAGTAGATTTGAAAGCATATTACTGGCTTACAGTGTTCTATTAAGTCGAGCACAACGACGTTTTGAAGGAACTTTG
AGATATTCTTTAGGATATTAAAATTAACTAGCACCACGGGT
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
910 bp | 302 aa | 111 | 1020 | + | Yes |
Chemistry : DDE
ORF sequence :
MRSSKYTEHYTDTFITFKEIMRTVSNIYHNCVPDKIKNRRNTDQLKQRDTVIIACVIWGIINGYTSQRATYRAVCSVLFPNGDFASRSRFTRLSSNLAYT
IKIIRYFFIKKLTKGELVGIIDSFPSPLCKPVRNRQAKLLNQIAKVGYNSTKRSYFYGLKIHMIVTKTGFPITYSITNPGVHDVKVLETLSEEANLPNIL
GDKGYISHKIHEKLALKGITISVPPRKNMDKSEKLDHSLLGKQRKTVETVFSSLEKLGCQNFNSRSVKGLESRFESILLAYSVLLSRAQRRFEGTLRYSL
GY
IKIIRYFFIKKLTKGELVGIIDSFPSPLCKPVRNRQAKLLNQIAKVGYNSTKRSYFYGLKIHMIVTKTGFPITYSITNPGVHDVKVLETLSEEANLPNIL
GDKGYISHKIHEKLALKGITISVPPRKNMDKSEKLDHSLLGKQRKTVETVFSSLEKLGCQNFNSRSVKGLESRFESILLAYSVLLSRAQRRFEGTLRYSL
GY
Blast result :
Comments
ISEfm1 is 98% similar with IS19, 60% with IS982. The protein is a fusion protein due to a ribosomal slippage (join 111-563; 565-1020).
References
1] Boyd,D., Dedier,H., Robertson,L., Slater,E., Conly,J. and Mulvey,M. (1999) Direct Submission