ISLbp1

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000348 ND Leptospira borgpetersenii
Leptospira borgpetersenii serovar Hardjo-bovis L550
DNA section
IS Length : 1407 bp

Ends


IR Length : 19

IRL : CAATGCTGTCAATTTAAGAAAAAAGACTAAAGATTAAAGAATTTAGTACG
IRR : CAATGCTGTCAATTTAAGAGACTCTGCCGTAATAGATTTCAAACTTACGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACCCTAAGGGTACCCCTTAGG0
ACGAAACGGCG/ACCCCTTAGGAAGCGTTTCAA11

DNA sequence

CAATGCTGTCAATTTAAGAAAAAAGACTAAAGATTAAAGAATTTAGTACGACAAGAAGACATGGGCAAGAAAGAATTACAATCATAGTCGAATTAGAAGC
TTGGATTTATTCCAGAAAGATTCTGGAAATCGCGCGAATGAAACCGAGCGCTTTTACTCGGAATCGTCAACTAACCCTACCGAGGTTGCTGATAGCCATG
ATAAACTTATTAAACAAAAGCTTAGCGGTCGAGTTATATAGATATTTTAAGAATTTAGGAAAGAAAGCTGTAACGAAACAGGCGTTTTCCTTTGCGCGGG
AGAATTTAAATCCGCAAGTGTTTGAATCGTTAAACGAAATATTTGTAAACAGCTACTACAAAAATGTAACGAATTGCAAAACGCATAAAGGTTATATAGT
TGCAGCTTGCGACGCAACAGGAATAAGCCTACCTAAAACGAAGGAGTTCGTGAAAGATTTTGGCTGTGTAAAAAATCAACTGGGGGAATCGGAATCGCCG
AATGCCAATAGTTCGATTATATTTGATATTTATAATGATATAATATTGAGTTCTACCGTTGGTCCGCATAGAACGAGTGAAAGGTCAATGGCGTTGCATC
ATATCGAGAAACTTAGATCGATCTCGGCTCTTCAAAATAAGAAATTGATTCTTCTTTTCGACAGGGGCTATCCATCGATGGAACTAATCGGAAAGTTAAT
GGCAAACGGAATCCATTTTATCGTTAGAAGCAACACCCGTTGGCTCAAAGAGGCAAAAATTGCAGGGGAATACAAAGAATACGACAAAGTTAAAAACATT
CTTATCACTAACAATATGCAAAAGAAGAAGGAATGGCTTAAGGAATATGCGAATACGAAAGGAAATCTGTTTTCATTACGTTTTGTCGGCTCAAGATATA
AAGACGGACAAGTCGGAATTTTTGTCACCGATCTTCCCGATTCCGAATTTTCAAGAGAAGCTATTGTTTCCCTCTACGGCAAACGTTGGAATATAGAAAC
TCATTTTCGTTTCGAAAAATATTCTCTTGAATTGGAGAATGTAGCATCCAAAACTTCAATCCGATTTCTTCAAGAATATTATGCAAAAATCTTAACATTT
AATCTTGCCTCTCTTCTAATCCAAGAAGCGCAAGAAGAATACGATCAATCGATTCAAAACAAAAAAGTAAAAACAAAATATGATTATAAAATTACTAGAA
ATATCGCGATCGGCATTCTAAAAGGAGAACTTCCAAGGTTACTTTCTGGAACTGAACCGATGAACTCCGTTTTTGATGAAATGAAAGCCGTACTTATAAA
ACATCGGCTACCTGTCATTCCAAATAGAACCTTCAATAGAAAACATAAAGTTCGAAAACGTAAGTTTGAAATCTATTACGGCAGAGTCTCTTAAATTGAC
AGCATTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1381394+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPSAFTRNRQLTLPRLLIAMINLLNKSLAVELYRYFKNLGKKAVTKQAFSFARENLNPQVFESLNEIFVNSYYKNVTNCKTHKGYIVAACDATGISLPK
TKEFVKDFGCVKNQLGESESPNANSSIIFDIYNDIILSSTVGPHRTSERSMALHHIEKLRSISALQNKKLILLFDRGYPSMELIGKLMANGIHFIVRSNT
RWLKEAKIAGEYKEYDKVKNILITNNMQKKKEWLKEYANTKGNLFSLRFVGSRYKDGQVGIFVTDLPDSEFSREAIVSLYGKRWNIETHFRFEKYSLELE
NVASKTSIRFLQEYYAKILTFNLASLLIQEAQEEYDQSIQNKKVKTKYDYKITRNIAIGILKGELPRLLSGTEPMNSVFDEMKAVLIKHRLPVIPNRTFN
RKHKVRKRKFEIYYGRVS

 

Blast result :
Comments
ISLbp1 is 46% aa similar to ISPa45.
References
1] ISfinder submission (2018)
2] Bulach,D.M., Zuerner,R.L., Wilson,P., Seemann,T., McGrath,A., Cullen,P.A., Davis,J., Johnson,M., Kuczek,E., Alt,D.P., Peterson-Burch,B., Coppel,R.L., Rood,J.I., Davies,J.K. and Adler,B. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (39), 14560-14565.