ISLhe66
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000517 | ND | Lactobacillus helveticus | Lactobacillus helveticus DPC 4571 |
DNA section
IS Length : 2262 bp
Ends
IR Length : 26
IRL : GTAAGCGTCCAAAACTGAAGTATCTTTTTTGGCTCCTAATTTTCGGCTAT
IRR : GTAAGCGTCCAAAACTGAAGTATCTTAAAACCCCATCTTGCCTTGTGCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGAAAAGTCTA | ACTAAAAA | GTAAGAATTAAA | 8 |
DNA sequence
GTAAGCGTCCAAAACTGAAGTATCTTTTTTGGCTCCTAATTTTCGGCTATCCTTGTTTCATAAACTTAAGGAGGCAACGAATATGCTTGAAAAACAACAG
TCAATCGTGGCTCTGGATCATCCGAAAAGACCAAAAAAGGCACGTCCGCCACGCAACAATTTGATGCTTAGTCTGAAAAAGAATGACCTTGAACTGAATT
TTTATAGCTCTTTGGATCCTGATGGCCTAAACAAAATCTTGAGCAAGGTCCTATCATGATTAACCTTTATGACTTGGGGCAGGTCTACATTGTTTGTGGT
CGAACAGATATGAGACGCGGAATCGATGGCCTGGCTGCCATAGTTAAAGATGAATTTGATTTGGATCCTTTTTCTGGCCGAGTCTTTATCTTCTGCGGTG
GCAGTCGCGACCGTTTCAAGGCTTTATATTGGGATGGTCAGGGATATTGGCTGCTTTATAAAAGATTTGAAAATGGCAAGATGATCTGGCCTAACAATCA
GGATGAAGTCAAAGCTTTGTCAAAAGAACAAGTAGATTGGTTAATGAAGGGCTTTTCTATTGAGCCTGGGATAAAAGCAACGAACGCACGCAATTTCTAT
TGATTTTGCGTGCGTTTCTGGTATGCTTTAAATTATCAAAAAATGAGAGAGATCCTAATGACAAGAGCTGAAACAAAAGATGAAATCATTAAAGGCTTAA
TGACTACTATTAACAACCTGAACGAAGAGATTTCCTTCTTGCGTGAACAAGTAGCCTACTTAACGCAAAAACGTTACGGCAAATCATCAGAACAAACGCC
TTTATCAGGCCAAACCAGCTTATTTGATGAAGAAAATTTTGCGGGCGATGAAGACGAGGATCTTCCCTGTTGAAACTGAAGAAATTGCCTATCGCAGAAG
AAGACGCAAGGCTAAGAGAGCCAATGTCTTAAAAGCTTTTGCCAGTGAAGAAATTCATCACCAATTGACTGGCAAAGATCTGCTTTGCCCAGATTGCCAG
CAGGAAATGAAAGAGATCGGCTCTTGTCCGGTTCGCCAAGAGCTGCTGTTCATTCCAGCACAAATCAAGCGACTGGATCATATCCAACATGCTTACAAAT
GTCAGTGCTGCAGTTTAAAAAATACTAGTGATAAGATTGTCAAGGCACCAGTGCCTAAAGCACCGCTAGCTCATAGCTATGGCTCTGCTTCAGTCATTGC
TCATACCATCTATCAAAAGTATGAGTTGAAAGTACCAGCCTATCGGCAAAAAAACGACTGGCAGAAAATGGGTCTGCCTATTACGCGCCGGGATATCATC
AACTGGCAGATCAAATCTACGGAATATTACTTTAAGCCGCTTTATCAATTGCTTAAGAAAAAGCTGCTAGAGCAAAAGTTTTTACACGCAGATGAAACAA
CTTATCGCGTCTTGGAAAGCAAGACGCAAAAAACTTTCTACTGGACTTTTCTGTCTGACAAGCAGGCAGAAAAGCCAATTACTCTATATCACCATAATCC
GCATCGCAGCGGTCAAGTAGCGATCCAATTCTTAGGCAATTATGCTGGCTACTTGCATTGTGACATGTGGCAGGCGTATGGGCAATTGGCGCAAGCTACT
TTGGTTGGCTGCTGGGCTCATGTCAGAAGAAAGTTCTTTGAAGCTGTGCCGCCTAAAGCATCAGACAAATCAATATCTAAACAAGGCGTGCGCTACTGCA
ATAGAATGTTTGCCCTAGAAAAAGACTGGGGAAATTTGTCTAACGAAGAGCGTCTTCGATTGCGTCGAAAGAAACTAGCGCCGCTGATGAGGGAATTCTT
TAACTGGTGTCGTAAGCAGAAAACAAGGACGCTGCCTAATTCCAAGCTAGGAAAAGCAATTGCTTACTCTTTGAATCATGAAGAAACATTTAAACATGTT
TTGTTAGATGGCCGACTGGTTTTGTCCAACAATCTAGCTGAGCGTGCAATCAAATCGCTGGTTATCGGCCGCAAGAACTGGTTGTTCTCTCAGAGTTTTA
ATGGTGCCCAATCTTCGGCCATCATTCTTAGTTTGATTGAAACTGCCAAGCGCAATGGCTTGGATCCAGAAAAATATCTGGTATATCTACTCTCTAATTT
GCCCAACGAATCAACTCTGACAGATAAAGAAGCACTGTCAGCTTATTTGCCATGGGAAAAAGCGGCACAAGCAAACTGCAGATAAAATTTGAATACAAAG
GCAACCCCATCTTAGCACAAGGCAAGATGGGGTTTTAAGATACTTCAGTTTTGGACGCTTAC
TCAATCGTGGCTCTGGATCATCCGAAAAGACCAAAAAAGGCACGTCCGCCACGCAACAATTTGATGCTTAGTCTGAAAAAGAATGACCTTGAACTGAATT
TTTATAGCTCTTTGGATCCTGATGGCCTAAACAAAATCTTGAGCAAGGTCCTATCATGATTAACCTTTATGACTTGGGGCAGGTCTACATTGTTTGTGGT
CGAACAGATATGAGACGCGGAATCGATGGCCTGGCTGCCATAGTTAAAGATGAATTTGATTTGGATCCTTTTTCTGGCCGAGTCTTTATCTTCTGCGGTG
GCAGTCGCGACCGTTTCAAGGCTTTATATTGGGATGGTCAGGGATATTGGCTGCTTTATAAAAGATTTGAAAATGGCAAGATGATCTGGCCTAACAATCA
GGATGAAGTCAAAGCTTTGTCAAAAGAACAAGTAGATTGGTTAATGAAGGGCTTTTCTATTGAGCCTGGGATAAAAGCAACGAACGCACGCAATTTCTAT
TGATTTTGCGTGCGTTTCTGGTATGCTTTAAATTATCAAAAAATGAGAGAGATCCTAATGACAAGAGCTGAAACAAAAGATGAAATCATTAAAGGCTTAA
TGACTACTATTAACAACCTGAACGAAGAGATTTCCTTCTTGCGTGAACAAGTAGCCTACTTAACGCAAAAACGTTACGGCAAATCATCAGAACAAACGCC
TTTATCAGGCCAAACCAGCTTATTTGATGAAGAAAATTTTGCGGGCGATGAAGACGAGGATCTTCCCTGTTGAAACTGAAGAAATTGCCTATCGCAGAAG
AAGACGCAAGGCTAAGAGAGCCAATGTCTTAAAAGCTTTTGCCAGTGAAGAAATTCATCACCAATTGACTGGCAAAGATCTGCTTTGCCCAGATTGCCAG
CAGGAAATGAAAGAGATCGGCTCTTGTCCGGTTCGCCAAGAGCTGCTGTTCATTCCAGCACAAATCAAGCGACTGGATCATATCCAACATGCTTACAAAT
GTCAGTGCTGCAGTTTAAAAAATACTAGTGATAAGATTGTCAAGGCACCAGTGCCTAAAGCACCGCTAGCTCATAGCTATGGCTCTGCTTCAGTCATTGC
TCATACCATCTATCAAAAGTATGAGTTGAAAGTACCAGCCTATCGGCAAAAAAACGACTGGCAGAAAATGGGTCTGCCTATTACGCGCCGGGATATCATC
AACTGGCAGATCAAATCTACGGAATATTACTTTAAGCCGCTTTATCAATTGCTTAAGAAAAAGCTGCTAGAGCAAAAGTTTTTACACGCAGATGAAACAA
CTTATCGCGTCTTGGAAAGCAAGACGCAAAAAACTTTCTACTGGACTTTTCTGTCTGACAAGCAGGCAGAAAAGCCAATTACTCTATATCACCATAATCC
GCATCGCAGCGGTCAAGTAGCGATCCAATTCTTAGGCAATTATGCTGGCTACTTGCATTGTGACATGTGGCAGGCGTATGGGCAATTGGCGCAAGCTACT
TTGGTTGGCTGCTGGGCTCATGTCAGAAGAAAGTTCTTTGAAGCTGTGCCGCCTAAAGCATCAGACAAATCAATATCTAAACAAGGCGTGCGCTACTGCA
ATAGAATGTTTGCCCTAGAAAAAGACTGGGGAAATTTGTCTAACGAAGAGCGTCTTCGATTGCGTCGAAAGAAACTAGCGCCGCTGATGAGGGAATTCTT
TAACTGGTGTCGTAAGCAGAAAACAAGGACGCTGCCTAATTCCAAGCTAGGAAAAGCAATTGCTTACTCTTTGAATCATGAAGAAACATTTAAACATGTT
TTGTTAGATGGCCGACTGGTTTTGTCCAACAATCTAGCTGAGCGTGCAATCAAATCGCTGGTTATCGGCCGCAAGAACTGGTTGTTCTCTCAGAGTTTTA
ATGGTGCCCAATCTTCGGCCATCATTCTTAGTTTGATTGAAACTGCCAAGCGCAATGGCTTGGATCCAGAAAAATATCTGGTATATCTACTCTCTAATTT
GCCCAACGAATCAACTCTGACAGATAAAGAAGCACTGTCAGCTTATTTGCCATGGGAAAAAGCGGCACAAGCAAACTGCAGATAAAATTTGAATACAAAG
GCAACCCCATCTTAGCACAAGGCAAGATGGGGTTTTAAGATACTTCAGTTTTGGACGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
177 bp | 58 aa | 83 | 259 | + | No |
AG : IS66 TnpA
ORF sequence :
MLEKQQSIVALDHPKRPKKARPPRNNLMLSLKKNDLELNFYSSLDPDGLNKILSKVLS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
348 bp | 114 aa | 256 | 603 | + | No |
AG : IS66 TnpB
ORF sequence :
MINLYDLGQVYIVCGRTDMRRGIDGLAAIVKDEFDLDPFSGRVFIFCGGSRDRFKALYWDGQGYWLLYKRFENGKMIWPNNQDEVKALSKEQVDWLMKGF
SIEPGIKATNARNFY
SIEPGIKATNARNFY
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1543 bp | 514 aa | 643 | 2185 | + | No |
Chemistry : DDE
ORF sequence :
MREILMTRAETKDEIIKGLMTTINNLNEEISFLREQVAYLTQKRYGKSSEQTPLSGQTSLFDEENFAGDEDEDLPPVETEEIAYRRRRRKAKRANVLKAF
ASEEIHHQLTGKDLLCPDCQQEMKEIGSCPVRQELLFIPAQIKRLDHIQHAYKCQCCSLKNTSDKIVKAPVPKAPLAHSYGSASVIAHTIYQKYELKVPA
YRQKNDWQKMGLPITRRDIINWQIKSTEYYFKPLYQLLKKKLLEQKFLHADETTYRVLESKTQKTFYWTFLSDKQAEKPITLYHHNPHRSGQVAIQFLGN
YAGYLHCDMWQAYGQLAQATLVGCWAHVRRKFFEAVPPKASDKSISKQGVRYCNRMFALEKDWGNLSNEERLRLRRKKLAPLMREFFNWCRKQKTRTLPN
SKLGKAIAYSLNHEETFKHVLLDGRLVLSNNLAERAIKSLVIGRKNWLFSQSFNGAQSSAIILSLIETAKRNGLDPEKYLVYLLSNLPNESTLTDKEALS
AYLPWEKAAQANCR
ASEEIHHQLTGKDLLCPDCQQEMKEIGSCPVRQELLFIPAQIKRLDHIQHAYKCQCCSLKNTSDKIVKAPVPKAPLAHSYGSASVIAHTIYQKYELKVPA
YRQKNDWQKMGLPITRRDIINWQIKSTEYYFKPLYQLLKKKLLEQKFLHADETTYRVLESKTQKTFYWTFLSDKQAEKPITLYHHNPHRSGQVAIQFLGN
YAGYLHCDMWQAYGQLAQATLVGCWAHVRRKFFEAVPPKASDKSISKQGVRYCNRMFALEKDWGNLSNEERLRLRRKKLAPLMREFFNWCRKQKTRTLPN
SKLGKAIAYSLNHEETFKHVLLDGRLVLSNNLAERAIKSLVIGRKNWLFSQSFNGAQSSAIILSLIETAKRNGLDPEKYLVYLLSNLPNESTLTDKEALS
AYLPWEKAAQANCR
Blast result :
Comments
ISLhe66 is 59% aa similar to ISCth11.
Possible sequencing error inducing unexpected frameshift in the transposase (in silico reconstructed).
Possible sequencing error inducing unexpected frameshift in the transposase (in silico reconstructed).
References
1] ISfinder submission (2018)
2] Callanan,M., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador-Vegas,A., Slattery,L., Fitzgerald,G.F., Beresford,T. and Ross,R.P. (2008) J. Bacteriol. 190 (2), 727-735.
2] Callanan,M., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador-Vegas,A., Slattery,L., Fitzgerald,G.F., Beresford,T. and Ross,R.P. (2008) J. Bacteriol. 190 (2), 727-735.