ISLfr1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB292687 | ND | Lactobacillus fructivorans | Lactobacillus fructivorans ATCC 15435 Pediococcus damnosus strain TMW 2.1534 Pediococcus damnosus strain TMW 2.1533 pL21533-1 Pediococcus damnosus strain TMW 2.1532 Pediococcus damnosus strain TMW 2.1535 pL21535-3 Lactobacillus backii strain TMW 1.2002 Lactobacillus backii strain TMW 1.1989 Lactobacillus coryniformis subsp. torquens DSM 20004 (KCTC 3535) pLDW-4 Lactobacillus amylophilus DSM 20533 (JCM 1125) |
DNA section
IS Length : 1468 bp
Ends
IR Length : 17/24
IRL : GATTCTACAATATCTGTTGTTGGTAATAGATTTTCATCTATTACTGATGA
IRR : GGCTCTTCGTCAACTGTTGTTGGTGAATCCATATTTCGAGTTCTAATCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACAGCCAA | CCATTTTA | TTAGCTAACTGC | 8 |
DNA sequence
GATTCTACAATATCTGTTGTTGGTAATAGATTTTCATCTATTACTGATGACAGATTTTTTATTTATGGCTAGAATAAAAAAGCGGACATTTCCTGTCCGT
TCATCCAAGTCAACCACCACGAAGATTTTTCAGAAAGAAGGAAATGCCCTATGTGTCATGATACTACAAAATTATTATTAGGAATAGCTGACGAGAACCT
AAAAATTACTGACGGTGAAACTGGAGAAGACGGGGTTATTCGCTTAACTGGCCACTTGGATTACACGCCGAAGGCTTGTCCCAAGTGCGGGATTATCAAT
GATCAAAAGATTATTAACTACGGCTGGCGCAATACCACTATCAGATTCTCGAAGGTTCTGAGCAACACCGTCATCTTAGCCTTAAAGCGCCGCTATTTCC
ACTGTAAAGAATGTCACGGCAACTTTCTTGCACAAACAGTGGCAGTTCCGAAACACTGTACAATTTCAAACACCAGCCGCAAAGAATGCCTAGAGAAGCT
CGGTGAACCGGTCTCTTTGAAGCACATTGCCAATGAAGTATCGGCATCAGATTCATTTGTGGGCCGCCAGTTAATGCGCGCTGAACGAGACTTTCAAACC
AATTGGCACTATTTACCAGAGATCATCTTAATGGATGAGGTGAAGAGTACCAAGAGCGCTACTGGTGCCATGAGCTTTGAGTTCATGAATGGCGAAACCC
ATGAATTAATCGACTTACTCCCTTATCGAACCATCAATAAACTAGAGAAGTATTTTTACCACTTCGATCAAGCTGCCCGAGAAAACGTCAAAATTATTGT
GACTGATATGAATTATACCTACCCCAAGCTTGTGCAGACCGTATTCCCCAATGCCATGGTGGTCATGGACAAGTTTCATATTATCAACGCCCTAAATCGG
GCGTTTAACAAAACCAGAATCAAGGTGATGAAGAAGTTTACCCCGTCTTCTCGCGAATTTCACGCCCTTAAGCGCTACTGGAAGCTATTGTTAGTACCAA
CTGAACAGCTTAACTTTGAACAATTCAAAAAGTGGACTAATTTTCCTTACTGGATGGCTGCCACCGATGTTGTCCATCAGCTGTTATTGTTGGATTCAGA
ACTAGAACAAACTTATCAAGTCTTAAACAGTGTCCGGTCAGCTGTCCAACATCAAGATTGGCATAACTACAATGCGGCATTTTGGAATAACAAAACGTAT
TCTGAAGAAATGAAGAACACGATTAAAACACTTGAAAGCCATCATGATGAGATTCGTAACACCTTTACCACACACTATTCAAATGGTCCTTTGGAAGGTT
CTAATAATAAAATCAAGGCGATCAAACGAGCCAGTTTTGGCTATCGCAGCTTCTGGAGGTTTAGAACTCGAGTACTATACGTTTTCAAAATCAAAACAAA
AAGAGCCCTAATCACGAAGTGATTAGAACTCGAAATATGGATTCACCAACAACAGTTGACGAAGAGCC
TCATCCAAGTCAACCACCACGAAGATTTTTCAGAAAGAAGGAAATGCCCTATGTGTCATGATACTACAAAATTATTATTAGGAATAGCTGACGAGAACCT
AAAAATTACTGACGGTGAAACTGGAGAAGACGGGGTTATTCGCTTAACTGGCCACTTGGATTACACGCCGAAGGCTTGTCCCAAGTGCGGGATTATCAAT
GATCAAAAGATTATTAACTACGGCTGGCGCAATACCACTATCAGATTCTCGAAGGTTCTGAGCAACACCGTCATCTTAGCCTTAAAGCGCCGCTATTTCC
ACTGTAAAGAATGTCACGGCAACTTTCTTGCACAAACAGTGGCAGTTCCGAAACACTGTACAATTTCAAACACCAGCCGCAAAGAATGCCTAGAGAAGCT
CGGTGAACCGGTCTCTTTGAAGCACATTGCCAATGAAGTATCGGCATCAGATTCATTTGTGGGCCGCCAGTTAATGCGCGCTGAACGAGACTTTCAAACC
AATTGGCACTATTTACCAGAGATCATCTTAATGGATGAGGTGAAGAGTACCAAGAGCGCTACTGGTGCCATGAGCTTTGAGTTCATGAATGGCGAAACCC
ATGAATTAATCGACTTACTCCCTTATCGAACCATCAATAAACTAGAGAAGTATTTTTACCACTTCGATCAAGCTGCCCGAGAAAACGTCAAAATTATTGT
GACTGATATGAATTATACCTACCCCAAGCTTGTGCAGACCGTATTCCCCAATGCCATGGTGGTCATGGACAAGTTTCATATTATCAACGCCCTAAATCGG
GCGTTTAACAAAACCAGAATCAAGGTGATGAAGAAGTTTACCCCGTCTTCTCGCGAATTTCACGCCCTTAAGCGCTACTGGAAGCTATTGTTAGTACCAA
CTGAACAGCTTAACTTTGAACAATTCAAAAAGTGGACTAATTTTCCTTACTGGATGGCTGCCACCGATGTTGTCCATCAGCTGTTATTGTTGGATTCAGA
ACTAGAACAAACTTATCAAGTCTTAAACAGTGTCCGGTCAGCTGTCCAACATCAAGATTGGCATAACTACAATGCGGCATTTTGGAATAACAAAACGTAT
TCTGAAGAAATGAAGAACACGATTAAAACACTTGAAAGCCATCATGATGAGATTCGTAACACCTTTACCACACACTATTCAAATGGTCCTTTGGAAGGTT
CTAATAATAAAATCAAGGCGATCAAACGAGCCAGTTTTGGCTATCGCAGCTTCTGGAGGTTTAGAACTCGAGTACTATACGTTTTCAAAATCAAAACAAA
AAGAGCCCTAATCACGAAGTGATTAGAACTCGAAATATGGATTCACCAACAACAGTTGACGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1272 bp | 423 aa | 151 | 1422 | + | No |
Chemistry : Unknow
ORF sequence :
MCHDTTKLLLGIADENLKITDGETGEDGVIRLTGHLDYTPKACPKCGIINDQKIINYGWRNTTIRFSKVLSNTVILALKRRYFHCKECHGNFLAQTVAVP
KHCTISNTSRKECLEKLGEPVSLKHIANEVSASDSFVGRQLMRAERDFQTNWHYLPEIILMDEVKSTKSATGAMSFEFMNGETHELIDLLPYRTINKLEK
YFYHFDQAARENVKIIVTDMNYTYPKLVQTVFPNAMVVMDKFHIINALNRAFNKTRIKVMKKFTPSSREFHALKRYWKLLLVPTEQLNFEQFKKWTNFPY
WMAATDVVHQLLLLDSELEQTYQVLNSVRSAVQHQDWHNYNAAFWNNKTYSEEMKNTIKTLESHHDEIRNTFTTHYSNGPLEGSNNKIKAIKRASFGYRS
FWRFRTRVLYVFKIKTKRALITK
KHCTISNTSRKECLEKLGEPVSLKHIANEVSASDSFVGRQLMRAERDFQTNWHYLPEIILMDEVKSTKSATGAMSFEFMNGETHELIDLLPYRTINKLEK
YFYHFDQAARENVKIIVTDMNYTYPKLVQTVFPNAMVVMDKFHIINALNRAFNKTRIKVMKKFTPSSREFHALKRYWKLLLVPTEQLNFEQFKKWTNFPY
WMAATDVVHQLLLLDSELEQTYQVLNSVRSAVQHQDWHNYNAAFWNNKTYSEEMKNTIKTLESHHDEIRNTFTTHYSNGPLEGSNNKIKAIKRASFGYRS
FWRFRTRVLYVFKIKTKRALITK
Blast result :
Comments
ISLfr1 is 56% aa similar to ISSau8.
References
1] ISfinder submission (2018)
2] Wada,Y. and Mizoguchi,H. (2007) J. Biosci. Bioeng. 103 (5), 399-405.
2] Wada,Y. and Mizoguchi,H. (2007) J. Biosci. Bioeng. 103 (5), 399-405.