ISLfr1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB292687 ND Lactobacillus fructivorans
Lactobacillus fructivorans ATCC 15435
Pediococcus damnosus strain TMW 2.1534
Pediococcus damnosus strain TMW 2.1533 pL21533-1
Pediococcus damnosus strain TMW 2.1532
Pediococcus damnosus strain TMW 2.1535 pL21535-3
Lactobacillus backii strain TMW 1.2002
Lactobacillus backii strain TMW 1.1989
Lactobacillus coryniformis subsp. torquens DSM 20004 (KCTC 3535) pLDW-4
Lactobacillus amylophilus DSM 20533 (JCM 1125)
DNA section
IS Length : 1468 bp

Ends


IR Length : 17/24

IRL : GATTCTACAATATCTGTTGTTGGTAATAGATTTTCATCTATTACTGATGA
IRR : GGCTCTTCGTCAACTGTTGTTGGTGAATCCATATTTCGAGTTCTAATCAC

Insertion site


Left flankDirect repeatRight flankDR Length
AAACAGCCAACCATTTTATTAGCTAACTGC8

DNA sequence

GATTCTACAATATCTGTTGTTGGTAATAGATTTTCATCTATTACTGATGACAGATTTTTTATTTATGGCTAGAATAAAAAAGCGGACATTTCCTGTCCGT
TCATCCAAGTCAACCACCACGAAGATTTTTCAGAAAGAAGGAAATGCCCTATGTGTCATGATACTACAAAATTATTATTAGGAATAGCTGACGAGAACCT
AAAAATTACTGACGGTGAAACTGGAGAAGACGGGGTTATTCGCTTAACTGGCCACTTGGATTACACGCCGAAGGCTTGTCCCAAGTGCGGGATTATCAAT
GATCAAAAGATTATTAACTACGGCTGGCGCAATACCACTATCAGATTCTCGAAGGTTCTGAGCAACACCGTCATCTTAGCCTTAAAGCGCCGCTATTTCC
ACTGTAAAGAATGTCACGGCAACTTTCTTGCACAAACAGTGGCAGTTCCGAAACACTGTACAATTTCAAACACCAGCCGCAAAGAATGCCTAGAGAAGCT
CGGTGAACCGGTCTCTTTGAAGCACATTGCCAATGAAGTATCGGCATCAGATTCATTTGTGGGCCGCCAGTTAATGCGCGCTGAACGAGACTTTCAAACC
AATTGGCACTATTTACCAGAGATCATCTTAATGGATGAGGTGAAGAGTACCAAGAGCGCTACTGGTGCCATGAGCTTTGAGTTCATGAATGGCGAAACCC
ATGAATTAATCGACTTACTCCCTTATCGAACCATCAATAAACTAGAGAAGTATTTTTACCACTTCGATCAAGCTGCCCGAGAAAACGTCAAAATTATTGT
GACTGATATGAATTATACCTACCCCAAGCTTGTGCAGACCGTATTCCCCAATGCCATGGTGGTCATGGACAAGTTTCATATTATCAACGCCCTAAATCGG
GCGTTTAACAAAACCAGAATCAAGGTGATGAAGAAGTTTACCCCGTCTTCTCGCGAATTTCACGCCCTTAAGCGCTACTGGAAGCTATTGTTAGTACCAA
CTGAACAGCTTAACTTTGAACAATTCAAAAAGTGGACTAATTTTCCTTACTGGATGGCTGCCACCGATGTTGTCCATCAGCTGTTATTGTTGGATTCAGA
ACTAGAACAAACTTATCAAGTCTTAAACAGTGTCCGGTCAGCTGTCCAACATCAAGATTGGCATAACTACAATGCGGCATTTTGGAATAACAAAACGTAT
TCTGAAGAAATGAAGAACACGATTAAAACACTTGAAAGCCATCATGATGAGATTCGTAACACCTTTACCACACACTATTCAAATGGTCCTTTGGAAGGTT
CTAATAATAAAATCAAGGCGATCAAACGAGCCAGTTTTGGCTATCGCAGCTTCTGGAGGTTTAGAACTCGAGTACTATACGTTTTCAAAATCAAAACAAA
AAGAGCCCTAATCACGAAGTGATTAGAACTCGAAATATGGATTCACCAACAACAGTTGACGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1272 bp423 aa1511422+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MCHDTTKLLLGIADENLKITDGETGEDGVIRLTGHLDYTPKACPKCGIINDQKIINYGWRNTTIRFSKVLSNTVILALKRRYFHCKECHGNFLAQTVAVP
KHCTISNTSRKECLEKLGEPVSLKHIANEVSASDSFVGRQLMRAERDFQTNWHYLPEIILMDEVKSTKSATGAMSFEFMNGETHELIDLLPYRTINKLEK
YFYHFDQAARENVKIIVTDMNYTYPKLVQTVFPNAMVVMDKFHIINALNRAFNKTRIKVMKKFTPSSREFHALKRYWKLLLVPTEQLNFEQFKKWTNFPY
WMAATDVVHQLLLLDSELEQTYQVLNSVRSAVQHQDWHNYNAAFWNNKTYSEEMKNTIKTLESHHDEIRNTFTTHYSNGPLEGSNNKIKAIKRASFGYRS
FWRFRTRVLYVFKIKTKRALITK

 

Blast result :
Comments
ISLfr1 is 56% aa similar to ISSau8.
References
1] ISfinder submission (2018)
2] Wada,Y. and Mizoguchi,H. (2007) J. Biosci. Bioeng. 103 (5), 399-405.