ISLdl3
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ316615 | ND | Lactobacillus delbrueckii | Lactobacillus delbrueckii subsp. lactis |
DNA section
IS Length : 1208 bp
Ends
IR Length : 21/28
IRL : CCCCGATTTAAAATTGAAGTGCAACACTTGATAACTAGACCAATTAGACT
IRR : CCTCAATTGTCAAGTTAAGTGCAACACTAATGGCCTATTCTTATAATTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACATGACTATTT | CATATTATTT | 0 |
DNA sequence
CCCCGATTTAAAATTGAAGTGCAACACTTGATAACTAGACCAATTAGACTAGCTTAAAAGGCCATGAAGGCCTATTCATATTATTAACGACAAAATCAAC
AGATAAGGATAGGTATCTTCATGACCCAAACTAAGAATATCATGCCTAAGCATTACCAACAACTCCAATCTTTTGAACGCAGTCAAATTGAGTGCCTGAC
TCGATTAGGATTTGGCGTTTGTCAGATCGCCAGCCGGCTTCACCGGAGTCCCAGCACCATTTCTCGCGAATTAAAACGCGGGTTAACCACCCAGATTGAT
TCCCAGAAACATCGGTCATATCAGGGCTACTTTGCCGAGCGCGGGGCGGCTTACTATCGAGAACAGCGGGCCAAGTGTCACCCCAAGGGTTTACTGCAGC
GGGCTGCCGTGTTCTTCAAGTCCCTGCCGAAAGCTTTAAAAGCTAAGCCACGAGTTTTCAGTGTCGATACGTATGTCCACTATTTCAAAGCTCATTACCC
GGGCTTTCCCTGCCCATCAACGGCTACGGTCTATCGGTATATCGAGGCTGGCAAGCTCCCGGAGCTTCACAGTTATGATTTACCCATGAAGTTACGTCGC
CGCGTTCAACGCCCGAATCACCGACATGCCCGCCTGAATAAAAAACGGCTTGGACAGTCCATTGAAGACCGGCCCGCAGTGGTTCGGAAACGTCAGGAGT
TGGGCCATTGGGAAGGCGACTTAGTGAAAGCCAAACGGGTTGAGTCCGAACCAGCTTTAATGACGTTAACCGAGCGAGTTAGCCGGATGGAAATTATCGT
TAAATTGCCTGATTACCGGGCAGAGACTTGCCGGCAAGCCCTCCAAGATACGATTGATGATTACGGTGCAGAAAACTTTCGGACGATCACGTTTGACAAC
GGCTCGGAATTCGCTAGTTTAAATCAGGTTCAAGGAACGGAAATCTACTTTGCCCATCCATATTCTCCCTGGGAACGGGGCACTAATGAGAATGTGAATG
GTCAATTAAGAGAGTTCTTCCCAAAGGGGCATTCCTTTAAAAACCTCTCATTAGTGGATCTGCAGTTGGTTCAAGACACGCTGAATCACCGTCCCCGCCG
CTGTATAAGCTATAGTTGTCCAGCGGATGTTATGCCACAACTGGTTTAACTTTCTAGACCAATTATAAGAATAGGCCATTAGTGTTGCACTTAACTTGAC
AATTGAGG
AGATAAGGATAGGTATCTTCATGACCCAAACTAAGAATATCATGCCTAAGCATTACCAACAACTCCAATCTTTTGAACGCAGTCAAATTGAGTGCCTGAC
TCGATTAGGATTTGGCGTTTGTCAGATCGCCAGCCGGCTTCACCGGAGTCCCAGCACCATTTCTCGCGAATTAAAACGCGGGTTAACCACCCAGATTGAT
TCCCAGAAACATCGGTCATATCAGGGCTACTTTGCCGAGCGCGGGGCGGCTTACTATCGAGAACAGCGGGCCAAGTGTCACCCCAAGGGTTTACTGCAGC
GGGCTGCCGTGTTCTTCAAGTCCCTGCCGAAAGCTTTAAAAGCTAAGCCACGAGTTTTCAGTGTCGATACGTATGTCCACTATTTCAAAGCTCATTACCC
GGGCTTTCCCTGCCCATCAACGGCTACGGTCTATCGGTATATCGAGGCTGGCAAGCTCCCGGAGCTTCACAGTTATGATTTACCCATGAAGTTACGTCGC
CGCGTTCAACGCCCGAATCACCGACATGCCCGCCTGAATAAAAAACGGCTTGGACAGTCCATTGAAGACCGGCCCGCAGTGGTTCGGAAACGTCAGGAGT
TGGGCCATTGGGAAGGCGACTTAGTGAAAGCCAAACGGGTTGAGTCCGAACCAGCTTTAATGACGTTAACCGAGCGAGTTAGCCGGATGGAAATTATCGT
TAAATTGCCTGATTACCGGGCAGAGACTTGCCGGCAAGCCCTCCAAGATACGATTGATGATTACGGTGCAGAAAACTTTCGGACGATCACGTTTGACAAC
GGCTCGGAATTCGCTAGTTTAAATCAGGTTCAAGGAACGGAAATCTACTTTGCCCATCCATATTCTCCCTGGGAACGGGGCACTAATGAGAATGTGAATG
GTCAATTAAGAGAGTTCTTCCCAAAGGGGCATTCCTTTAAAAACCTCTCATTAGTGGATCTGCAGTTGGTTCAAGACACGCTGAATCACCGTCCCCGCCG
CTGTATAAGCTATAGTTGTCCAGCGGATGTTATGCCACAACTGGTTTAACTTTCTAGACCAATTATAAGAATAGGCCATTAGTGTTGCACTTAACTTGAC
AATTGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 121 | 1149 | + | No |
Chemistry : DDE
ORF sequence :
MTQTKNIMPKHYQQLQSFERSQIECLTRLGFGVCQIASRLHRSPSTISRELKRGLTTQIDSQKHRSYQGYFAERGAAYYREQRAKCHPKGLLQRAAVFFK
SLPKALKAKPRVFSVDTYVHYFKAHYPGFPCPSTATVYRYIEAGKLPELHSYDLPMKLRRRVQRPNHRHARLNKKRLGQSIEDRPAVVRKRQELGHWEGD
LVKAKRVESEPALMTLTERVSRMEIIVKLPDYRAETCRQALQDTIDDYGAENFRTITFDNGSEFASLNQVQGTEIYFAHPYSPWERGTNENVNGQLREFF
PKGHSFKNLSLVDLQLVQDTLNHRPRRCISYSCPADVMPQLV
SLPKALKAKPRVFSVDTYVHYFKAHYPGFPCPSTATVYRYIEAGKLPELHSYDLPMKLRRRVQRPNHRHARLNKKRLGQSIEDRPAVVRKRQELGHWEGD
LVKAKRVESEPALMTLTERVSRMEIIVKLPDYRAETCRQALQDTIDDYGAENFRTITFDNGSEFASLNQVQGTEIYFAHPYSPWERGTNENVNGQLREFF
PKGHSFKNLSLVDLQLVQDTLNHRPRRCISYSCPADVMPQLV
Blast result :
Comments
ISLdl3 is 58% aa similar to ISStin2.
References
1] ISfinder submission (2018)
2] Ravin,V. and Alatossava,T. (2002) Microbiol. Res. 157 (2), 109-114 .
3] Ravin,V. and Alatossava,T. (2003) Plasmid 49 (3), 253-268.
2] Ravin,V. and Alatossava,T. (2002) Microbiol. Res. 157 (2), 109-114 .
3] Ravin,V. and Alatossava,T. (2003) Plasmid 49 (3), 253-268.