ISHne6
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP000158 | ND | Hyphomonas neptunium | Hyphomonas neptunium ATCC 15444 |
DNA section
IS Length : 777 bp
Ends
IR Length : 13/23
IRL : GGCCATGTAGCCTCAGGGAATGGCCATATCACCATTTCGCTACTTCAAGA
IRR : GGTGCTGTCAGTCGAATGCGAACCCGTCTCCGCTATTCGCGGGTCAGCAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGCCTTGAGGAGGTGATTTC | GCCAGACTTTCTGCGTAGTCTC | 0 |
DNA sequence
GGCCATGTAGCCTCAGGGAATGGCCATATCACCATTTCGCTACTTCAAGACCTCGTCTGAGATCATCCAGCTTGGCGTGCTGATGTATGTCCGATTTCCG
CTTTGGCTTCGCAATGTCGAAGATCTTCTGCACGAGCGCGGCATAGACGTGTGTCACGAGAGTGTCCGCTTGTGGGTCGATCGCTTCGGAACATACTTCG
CAGATAAGATCCGTAAGCGGAGGTCAGAGGCAATGCGCCGGGTCAAGCAATGGCGCTGGCACCTGGATGAGGTCTTCGTGAAGATCCGCGGAGAGACACA
CTATCTTTGGCGCGCGGTTGACCACGAAGGGGAGGTGTTTGAAGCTTACGTCACCAAGAAGCGGGACAAGGCTGCAGCGCTGAAATTCCTCAGAAAAGCC
ATGAAACGCTATGGAAATCCAGAAGTCGTGGTGACTGACAAGTGCCCATCCTACCGCGCAGCGATGAAGGTGATTGGAAACGAGGGACGCCAGGAAACAG
GCCGTCATTTAAACAATCGCGCCGAGAATTCGCACTTGCCTTTTCGAAGACGCGAGCGGGCGATGTCGCGCTTCAGGCGAATGCGTAGTCTTCAAAAATT
CGCTTCAATGCATTCGTCTGTACACAATCATTTCAATCATCAGAGAAACATCAAGAGGAGGGCCGGCTTCAAATCGCTACGAGACGCCGCCTTTCGCGAA
TGGCGCGAACTTCTCGTTGTCTAGCACCTGCTGACCCGCGAATAGCGGAGACGGGTTCGCATTCGACTGACAGCACC
CTTTGGCTTCGCAATGTCGAAGATCTTCTGCACGAGCGCGGCATAGACGTGTGTCACGAGAGTGTCCGCTTGTGGGTCGATCGCTTCGGAACATACTTCG
CAGATAAGATCCGTAAGCGGAGGTCAGAGGCAATGCGCCGGGTCAAGCAATGGCGCTGGCACCTGGATGAGGTCTTCGTGAAGATCCGCGGAGAGACACA
CTATCTTTGGCGCGCGGTTGACCACGAAGGGGAGGTGTTTGAAGCTTACGTCACCAAGAAGCGGGACAAGGCTGCAGCGCTGAAATTCCTCAGAAAAGCC
ATGAAACGCTATGGAAATCCAGAAGTCGTGGTGACTGACAAGTGCCCATCCTACCGCGCAGCGATGAAGGTGATTGGAAACGAGGGACGCCAGGAAACAG
GCCGTCATTTAAACAATCGCGCCGAGAATTCGCACTTGCCTTTTCGAAGACGCGAGCGGGCGATGTCGCGCTTCAGGCGAATGCGTAGTCTTCAAAAATT
CGCTTCAATGCATTCGTCTGTACACAATCATTTCAATCATCAGAGAAACATCAAGAGGAGGGCCGGCTTCAAATCGCTACGAGACGCCGCCTTTCGCGAA
TGGCGCGAACTTCTCGTTGTCTAGCACCTGCTGACCCGCGAATAGCGGAGACGGGTTCGCATTCGACTGACAGCACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 705 bp | 234 aa | 20 | 724 | + | No |
Chemistry : DDE
ORF sequence :
MAISPFRYFKTSSEIIQLGVLMYVRFPLWLRNVEDLLHERGIDVCHESVRLWVDRFGTYFADKIRKRRSEAMRRVKQWRWHLDEVFVKIRGETHYLWRAV
DHEGEVFEAYVTKKRDKAAALKFLRKAMKRYGNPEVVVTDKCPSYRAAMKVIGNEGRQETGRHLNNRAENSHLPFRRRERAMSRFRRMRSLQKFASMHSS
VHNHFNHQRNIKRRAGFKSLRDAAFREWRELLVV
DHEGEVFEAYVTKKRDKAAALKFLRKAMKRYGNPEVVVTDKCPSYRAAMKVIGNEGRQETGRHLNNRAENSHLPFRRRERAMSRFRRMRSLQKFASMHSS
VHNHFNHQRNIKRRAGFKSLRDAAFREWRELLVV
Blast result :
Comments
ISHne6 is 65% aa similar to ISApr5.
References
1] ISfinder submission (2018)
2] Badger,J.H., Hoover,T.R., Brun,Y.V., Weiner,R.M., Laub,M.T., Alexandre,G., Mrazek,J., Ren,Q., Paulsen,I.T., Nelson,K.E., Khouri,H.M., Radune,D., Sosa,J., Dodson,R.J., Sullivan,S.A., Rosovitz,M.J., Madupu,R., Brinkac,L.M., Durkin,A.S., Daugherty,S.C., Kothari,S.P., Giglio,M.G., Zhou,L., Haft,D.H., Selengut,J.D., Davidsen,T.M., Yang,Q., Zafar,N. and Ward,N.L. (2006) J. Bacteriol. 188 (19), 6841-6850.
2] Badger,J.H., Hoover,T.R., Brun,Y.V., Weiner,R.M., Laub,M.T., Alexandre,G., Mrazek,J., Ren,Q., Paulsen,I.T., Nelson,K.E., Khouri,H.M., Radune,D., Sosa,J., Dodson,R.J., Sullivan,S.A., Rosovitz,M.J., Madupu,R., Brinkac,L.M., Durkin,A.S., Daugherty,S.C., Kothari,S.P., Giglio,M.G., Zhou,L., Haft,D.H., Selengut,J.D., Davidsen,T.M., Yang,Q., Zafar,N. and Ward,N.L. (2006) J. Bacteriol. 188 (19), 6841-6850.