ISFac4
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP004145 | ND | Ferroplasma acidarmanus | Ferroplasma acidarmanus Fer1 |
DNA section
IS Length : 1482 bp
Ends
Left end : GGTTATATAGTATTGTAATGGTGTCAGAACGATGGACAAGAAGCAATAAATCAGTATATAATCTGGGATACCATATTATCTGGTGCCCGAAATACAGAAG II struct. : No
Right end : GAGATGCGTACAAAGGGAACACTGGTATCCCTGAAGAGGCAACGTTAGGAACGATGGCGACCTTAGAACCCCACATGCTTTAGCTGTGGGAGTATGTCAG II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGTAAAAAACTAATAG | TTAA | CTAATGGTATTCCAGAAT | TCAG |
DNA sequence
GGTTATATAGTATTGTAATGGTGTCAGAACGATGGACAAGAAGCAATAAATCAGTATATAATCTGGGATACCATATTATCTGGTGCCCGAAATACAGAAG
AAATGTACTGGTAAATGGCATAGATGTAAGATTGAAGGAATTATTAAATTATAAGGCACAGGAATTAAAGATAGAAATTAAAGAAATGGAAGTTATGCCG
GACCATATACACATATTTATAAAAGCAGATCCAGTATTGAGCCCGCATTATATTATTCAGCAATTCAAAGGATATACTTCCAGGATACTGAGGCAGGAAT
TTCCAGTATTGAAACGCAAGCTGCCAACACTATGGACAAGAAGCTATTATATAGAATCTGTAGGGCATATATCCGAGTCAGTAGTCAGGAAATATATAGA
GGAGCAGAAGAAAGTATGATATTAACATATAAAATTAAACATGGCAAAGATTTTTCTGAAGAATTAAACAAAGCCAGGCAAATAGCAGAGTTTGCCATTA
AAACAAAATCCATTATATCCAGGGATGTAAAACAGTTCGGGTTAAAATCAGCCATTTCAAACCAGATATTAAGGAAATACTCCAGGAATTCAAAAGCAAA
GGATGTACATAAAATAAAATTGACAGTGCCACATCAGGGAATAAAATGTAATAATGAGGACAGAACAATAACCATAACTCCCCTGAAGCTAACTTTAAAC
TATTATTTCAGGAATGACTTTGATAAGATAAACCAGATTGAACTGGATAATAAATTTGCATATGTATCTATAAATATCCCTGATAATGATCTCATTGAAC
CCAATGGATACTTAGGAGTGGACAGGAACACAACAGGGCATATTGCTGTTGCTGGCAATCCAGAAACGGGAAAAATAATAAAGCTTGGAAAGGAAGCAGG
TCATGTGCATAAGAAGTATAGCAAGACGAGGAAGAATCTGCAGAAAAAAGGAAAAAATAGGAAAGCTAAGAGAATAAAGAACAGGGAAAGCAGAATAGTC
AAAGATATTAACCATAAGGTAGCAAGAAAGATAGTGCAGGAAGCAAAGGATAATGGAATGGGAATAAAGCTCGAATATTTAAACGGAATAAGAAATGCAA
AATCGAGCAAGAGTTTCAGGTATTCCCTGAATAGCTGGTCATTCTATCAGCTTAAAACTATGATAGAATATAAGGCCAGACTACCTGGAATACCTGTTGC
CTATGTCGATCCATATAATACATCTAAAGAGTGTAGCAGATGTGGACAGATAGGCAACCGTTCAGGAAAATCATTTAAGTGCAACAATTGCGGGCACGTT
GATCATGCTGATGCCAATGCTTCGTTCAACATAGCATTGCGTCCAGTATTTGAGGAAGGCATAGATCAATTGTACGTAGACAGAGATGCGTACAAAGGGA
ACACTGGTATCCCTGAAGAGGCAACGTTAGGAACGATGGCGACCTTAGAACCCCACATGCTTTAGCTGTGGGAGTATGTCAG
AAATGTACTGGTAAATGGCATAGATGTAAGATTGAAGGAATTATTAAATTATAAGGCACAGGAATTAAAGATAGAAATTAAAGAAATGGAAGTTATGCCG
GACCATATACACATATTTATAAAAGCAGATCCAGTATTGAGCCCGCATTATATTATTCAGCAATTCAAAGGATATACTTCCAGGATACTGAGGCAGGAAT
TTCCAGTATTGAAACGCAAGCTGCCAACACTATGGACAAGAAGCTATTATATAGAATCTGTAGGGCATATATCCGAGTCAGTAGTCAGGAAATATATAGA
GGAGCAGAAGAAAGTATGATATTAACATATAAAATTAAACATGGCAAAGATTTTTCTGAAGAATTAAACAAAGCCAGGCAAATAGCAGAGTTTGCCATTA
AAACAAAATCCATTATATCCAGGGATGTAAAACAGTTCGGGTTAAAATCAGCCATTTCAAACCAGATATTAAGGAAATACTCCAGGAATTCAAAAGCAAA
GGATGTACATAAAATAAAATTGACAGTGCCACATCAGGGAATAAAATGTAATAATGAGGACAGAACAATAACCATAACTCCCCTGAAGCTAACTTTAAAC
TATTATTTCAGGAATGACTTTGATAAGATAAACCAGATTGAACTGGATAATAAATTTGCATATGTATCTATAAATATCCCTGATAATGATCTCATTGAAC
CCAATGGATACTTAGGAGTGGACAGGAACACAACAGGGCATATTGCTGTTGCTGGCAATCCAGAAACGGGAAAAATAATAAAGCTTGGAAAGGAAGCAGG
TCATGTGCATAAGAAGTATAGCAAGACGAGGAAGAATCTGCAGAAAAAAGGAAAAAATAGGAAAGCTAAGAGAATAAAGAACAGGGAAAGCAGAATAGTC
AAAGATATTAACCATAAGGTAGCAAGAAAGATAGTGCAGGAAGCAAAGGATAATGGAATGGGAATAAAGCTCGAATATTTAAACGGAATAAGAAATGCAA
AATCGAGCAAGAGTTTCAGGTATTCCCTGAATAGCTGGTCATTCTATCAGCTTAAAACTATGATAGAATATAAGGCCAGACTACCTGGAATACCTGTTGC
CTATGTCGATCCATATAATACATCTAAAGAGTGTAGCAGATGTGGACAGATAGGCAACCGTTCAGGAAAATCATTTAAGTGCAACAATTGCGGGCACGTT
GATCATGCTGATGCCAATGCTTCGTTCAACATAGCATTGCGTCCAGTATTTGAGGAAGGCATAGATCAATTGTACGTAGACAGAGATGCGTACAAAGGGA
ACACTGGTATCCCTGAAGAGGCAACGTTAGGAACGATGGCGACCTTAGAACCCCACATGCTTTAGCTGTGGGAGTATGTCAG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
402 bp | 133 aa | 18 | 419 | + | No |
Chemistry : Y1
ORF sequence :
MVSERWTRSNKSVYNLGYHIIWCPKYRRNVLVNGIDVRLKELLNYKAQELKIEIKEMEVMPDHIHIFIKADPVLSPHYIIQQFKGYTSRILRQEFPVLKR
KLPTLWTRSYYIESVGHISESVVRKYIEEQKKV
KLPTLWTRSYYIESVGHISESVVRKYIEEQKKV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1050 bp | 349 aa | 416 | 1465 | + | No |
AG : TnpB
ORF sequence :
MILTYKIKHGKDFSEELNKARQIAEFAIKTKSIISRDVKQFGLKSAISNQILRKYSRNSKAKDVHKIKLTVPHQGIKCNNEDRTITITPLKLTLNYYFRN
DFDKINQIELDNKFAYVSINIPDNDLIEPNGYLGVDRNTTGHIAVAGNPETGKIIKLGKEAGHVHKKYSKTRKNLQKKGKNRKAKRIKNRESRIVKDINH
KVARKIVQEAKDNGMGIKLEYLNGIRNAKSSKSFRYSLNSWSFYQLKTMIEYKARLPGIPVAYVDPYNTSKECSRCGQIGNRSGKSFKCNNCGHVDHADA
NASFNIALRPVFEEGIDQLYVDRDAYKGNTGIPEEATLGTMATLEPHML
DFDKINQIELDNKFAYVSINIPDNDLIEPNGYLGVDRNTTGHIAVAGNPETGKIIKLGKEAGHVHKKYSKTRKNLQKKGKNRKAKRIKNRESRIVKDINH
KVARKIVQEAKDNGMGIKLEYLNGIRNAKSSKSFRYSLNSWSFYQLKTMIEYKARLPGIPVAYVDPYNTSKECSRCGQIGNRSGKSFKCNNCGHVDHADA
NASFNIALRPVFEEGIDQLYVDRDAYKGNTGIPEEATLGTMATLEPHML
Blast result :
Comments
ISFac4 is 77% (transposase) aa similar to ISTac1.
References
1] ISfinder submission (2018)
2] Allen,E.E., Tyson,G.W., Whitaker,R.J., Detter,J.C., Richardson,P.M. and Banfield,J.F. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (6), 1883-1888.
2] Allen,E.E., Tyson,G.W., Whitaker,R.J., Detter,J.C., Richardson,P.M. and Banfield,J.F. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (6), 1883-1888.