ISFac4

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP004145 ND Ferroplasma acidarmanus
Ferroplasma acidarmanus Fer1
DNA section
IS Length : 1482 bp

Ends


Left end : GGTTATATAGTATTGTAATGGTGTCAGAACGATGGACAAGAAGCAATAAATCAGTATATAATCTGGGATACCATATTATCTGGTGCCCGAAATACAGAAG II struct. : No
Right end : GAGATGCGTACAAAGGGAACACTGGTATCCCTGAAGAGGCAACGTTAGGAACGATGGCGACCTTAGAACCCCACATGCTTTAGCTGTGGGAGTATGTCAG II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGTAAAAAACTAATAGTTAACTAATGGTATTCCAGAATTCAG

DNA sequence

GGTTATATAGTATTGTAATGGTGTCAGAACGATGGACAAGAAGCAATAAATCAGTATATAATCTGGGATACCATATTATCTGGTGCCCGAAATACAGAAG
AAATGTACTGGTAAATGGCATAGATGTAAGATTGAAGGAATTATTAAATTATAAGGCACAGGAATTAAAGATAGAAATTAAAGAAATGGAAGTTATGCCG
GACCATATACACATATTTATAAAAGCAGATCCAGTATTGAGCCCGCATTATATTATTCAGCAATTCAAAGGATATACTTCCAGGATACTGAGGCAGGAAT
TTCCAGTATTGAAACGCAAGCTGCCAACACTATGGACAAGAAGCTATTATATAGAATCTGTAGGGCATATATCCGAGTCAGTAGTCAGGAAATATATAGA
GGAGCAGAAGAAAGTATGATATTAACATATAAAATTAAACATGGCAAAGATTTTTCTGAAGAATTAAACAAAGCCAGGCAAATAGCAGAGTTTGCCATTA
AAACAAAATCCATTATATCCAGGGATGTAAAACAGTTCGGGTTAAAATCAGCCATTTCAAACCAGATATTAAGGAAATACTCCAGGAATTCAAAAGCAAA
GGATGTACATAAAATAAAATTGACAGTGCCACATCAGGGAATAAAATGTAATAATGAGGACAGAACAATAACCATAACTCCCCTGAAGCTAACTTTAAAC
TATTATTTCAGGAATGACTTTGATAAGATAAACCAGATTGAACTGGATAATAAATTTGCATATGTATCTATAAATATCCCTGATAATGATCTCATTGAAC
CCAATGGATACTTAGGAGTGGACAGGAACACAACAGGGCATATTGCTGTTGCTGGCAATCCAGAAACGGGAAAAATAATAAAGCTTGGAAAGGAAGCAGG
TCATGTGCATAAGAAGTATAGCAAGACGAGGAAGAATCTGCAGAAAAAAGGAAAAAATAGGAAAGCTAAGAGAATAAAGAACAGGGAAAGCAGAATAGTC
AAAGATATTAACCATAAGGTAGCAAGAAAGATAGTGCAGGAAGCAAAGGATAATGGAATGGGAATAAAGCTCGAATATTTAAACGGAATAAGAAATGCAA
AATCGAGCAAGAGTTTCAGGTATTCCCTGAATAGCTGGTCATTCTATCAGCTTAAAACTATGATAGAATATAAGGCCAGACTACCTGGAATACCTGTTGC
CTATGTCGATCCATATAATACATCTAAAGAGTGTAGCAGATGTGGACAGATAGGCAACCGTTCAGGAAAATCATTTAAGTGCAACAATTGCGGGCACGTT
GATCATGCTGATGCCAATGCTTCGTTCAACATAGCATTGCGTCCAGTATTTGAGGAAGGCATAGATCAATTGTACGTAGACAGAGATGCGTACAAAGGGA
ACACTGGTATCCCTGAAGAGGCAACGTTAGGAACGATGGCGACCTTAGAACCCCACATGCTTTAGCTGTGGGAGTATGTCAG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
402 bp133 aa18419+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MVSERWTRSNKSVYNLGYHIIWCPKYRRNVLVNGIDVRLKELLNYKAQELKIEIKEMEVMPDHIHIFIKADPVLSPHYIIQQFKGYTSRILRQEFPVLKR
KLPTLWTRSYYIESVGHISESVVRKYIEEQKKV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1050 bp349 aa4161465+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MILTYKIKHGKDFSEELNKARQIAEFAIKTKSIISRDVKQFGLKSAISNQILRKYSRNSKAKDVHKIKLTVPHQGIKCNNEDRTITITPLKLTLNYYFRN
DFDKINQIELDNKFAYVSINIPDNDLIEPNGYLGVDRNTTGHIAVAGNPETGKIIKLGKEAGHVHKKYSKTRKNLQKKGKNRKAKRIKNRESRIVKDINH
KVARKIVQEAKDNGMGIKLEYLNGIRNAKSSKSFRYSLNSWSFYQLKTMIEYKARLPGIPVAYVDPYNTSKECSRCGQIGNRSGKSFKCNNCGHVDHADA
NASFNIALRPVFEEGIDQLYVDRDAYKGNTGIPEEATLGTMATLEPHML

 

Blast result :
Comments
ISFac4 is 77% (transposase) aa similar to ISTac1.
References
1] ISfinder submission (2018)
2] Allen,E.E., Tyson,G.W., Whitaker,R.J., Detter,J.C., Richardson,P.M. and Banfield,J.F. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (6), 1883-1888.