ISPa96

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP028162.1 N Pseudomonas aeruginosa
Pseudomonas aeruginosa MRSN12280
DNA section
IS Length : 1179 bp

Ends


IR Length : 16

IRL : GGAAGGTCTGCACAAATGGGGCCCCGCCGTGCTTGGCAAGTGCGTGAGCT
IRR : GGAAGGTCTGCACAAAGCACCCTGAACCGTGCCTGCGCCCCGAGTGACTC

Insertion site


Left flankDirect repeatRight flankDR Length
CGTGAGAAACGCCAGCACGGCAAGCTAAGACACCCGGAATCACCG0

DNA sequence

GGAAGGTCTGCACAAATGGGGCCCCGCCGTGCTTGGCAAGTGCGTGAGCTGCTGAGACCATATCGCCCATGAAGCAACACAGCCTGGGCCTGGGGATGAC
GGCCAAGCGCACGCGGCGGCGCGAGTTTCTGGAAGAGATGGAACGCGTGGTGCCCTGGGCCGACTTGGTGGCGCTGGTGTCGCCCTACCTGCCCGAGGGC
CGGCGCGGACGTCCGCCGTTTGCCCCGGAGACCATGCTGCGCATCCACTTCATGCAGCAGTGGTTCAACCTGAGCGACCCGGCCATGGAAGAGGCGCTGC
ACGACGTGCCGCTGTTCCGCGAGTTCGCCGGGCTGGAAGGCTGGGAAGAACGGCTGCCCGACGAGAGCACCATCCTGAGGTTCCGCCACGTGCTCGAACA
GCACCAGCTGGCCGCCCAGATCCTGAAGACCGTCAACGACCTGCTGGGCGCCAAGGGGCTGCTGCTCAGGAGCGGCACGGTGGTCGATGCCACACTCATC
GCAGCCCCGAGCTCCACCAAGAACGCCTCGGGGCAGCGTGATCCCGAGATGAAGCAAAGCCGCAAGGGCCAGCAGTGGTACTTCGGCATGAAGTGCCACA
TCGGCGTGGATGCCGACTCGGGCCTGGTGCACACCGTGCGCGGCACTGGCGGGCACGTCAACGACGTGGTCGAGGCCGCCAGCCTGCTGCACGGACAGGA
GCGCGACGTGTTTGCCGATGCGGGCTACCAGGGTGCGGGCAAACGAGCCGACGCCCCGCCCGGAGTGCAGTGGCACATCGCCATGAAGCCGGGGCAGCGC
CGGGTGCTGGATCCGGCCGATCCCATAGAGGGGCTGACCGAGCAGCTCGAGCGGCTGAAGGCGCGCATCCGGGCCAAGGTGGAACATCCCTTCCGGGTGG
TCAAGCGCCAGTTCGGGCATGTGAAGGTGCGCTACCGGGGTTTGGCCAAGAACACGGCGCAGCTGCACACGCTGTTTGCGCTGGCCAACCTGTGGCTGGC
GCGCCGCCAACTCCTGGGAGCGGGGGCATGAGTGCGCCCGAAATGGGCCTGCGGGGCCGCCACGGCCACCGAATCGGCGGGAGTGTCGGTGCATTTGGGC
CGAAGGGGGCATCGCAGACATTCGATTTCGAGTCACTCGGGGCGCAGGCACGGTTCAGGGTGCTTTGTGCAGACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa691031+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQHSLGLGMTAKRTRRREFLEEMERVVPWADLVALVSPYLPEGRRGRPPFAPETMLRIHFMQQWFNLSDPAMEEALHDVPLFREFAGLEGWEERLPDES
TILRFRHVLEQHQLAAQILKTVNDLLGAKGLLLRSGTVVDATLIAAPSSTKNASGQRDPEMKQSRKGQQWYFGMKCHIGVDADSGLVHTVRGTGGHVNDV
VEAASLLHGQERDVFADAGYQGAGKRADAPPGVQWHIAMKPGQRRVLDPADPIEGLTEQLERLKARIRAKVEHPFRVVKRQFGHVKVRYRGLAKNTAQLH
TLFALANLWLARRQLLGAGA

 

Blast result :
Comments
ISPa96 is 90% aa similar to ISBmu20.
References
1] Mick Chandler (2018) Direct submission.
2] Snesrud,E., Ong,A.C., Kwak,Y.I., Jones,A.R., Hinkle,M.K. and McGann,P. (2018) Direct GenBank submission.