ISPa96
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP028162.1 | N | Pseudomonas aeruginosa | Pseudomonas aeruginosa MRSN12280 |
DNA section
IS Length : 1179 bp
Ends
IR Length : 16
IRL : GGAAGGTCTGCACAAATGGGGCCCCGCCGTGCTTGGCAAGTGCGTGAGCT
IRR : GGAAGGTCTGCACAAAGCACCCTGAACCGTGCCTGCGCCCCGAGTGACTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTGAGAAACGCCAGCACGGCAAG | CTAAGACACCCGGAATCACCG | 0 |
DNA sequence
GGAAGGTCTGCACAAATGGGGCCCCGCCGTGCTTGGCAAGTGCGTGAGCTGCTGAGACCATATCGCCCATGAAGCAACACAGCCTGGGCCTGGGGATGAC
GGCCAAGCGCACGCGGCGGCGCGAGTTTCTGGAAGAGATGGAACGCGTGGTGCCCTGGGCCGACTTGGTGGCGCTGGTGTCGCCCTACCTGCCCGAGGGC
CGGCGCGGACGTCCGCCGTTTGCCCCGGAGACCATGCTGCGCATCCACTTCATGCAGCAGTGGTTCAACCTGAGCGACCCGGCCATGGAAGAGGCGCTGC
ACGACGTGCCGCTGTTCCGCGAGTTCGCCGGGCTGGAAGGCTGGGAAGAACGGCTGCCCGACGAGAGCACCATCCTGAGGTTCCGCCACGTGCTCGAACA
GCACCAGCTGGCCGCCCAGATCCTGAAGACCGTCAACGACCTGCTGGGCGCCAAGGGGCTGCTGCTCAGGAGCGGCACGGTGGTCGATGCCACACTCATC
GCAGCCCCGAGCTCCACCAAGAACGCCTCGGGGCAGCGTGATCCCGAGATGAAGCAAAGCCGCAAGGGCCAGCAGTGGTACTTCGGCATGAAGTGCCACA
TCGGCGTGGATGCCGACTCGGGCCTGGTGCACACCGTGCGCGGCACTGGCGGGCACGTCAACGACGTGGTCGAGGCCGCCAGCCTGCTGCACGGACAGGA
GCGCGACGTGTTTGCCGATGCGGGCTACCAGGGTGCGGGCAAACGAGCCGACGCCCCGCCCGGAGTGCAGTGGCACATCGCCATGAAGCCGGGGCAGCGC
CGGGTGCTGGATCCGGCCGATCCCATAGAGGGGCTGACCGAGCAGCTCGAGCGGCTGAAGGCGCGCATCCGGGCCAAGGTGGAACATCCCTTCCGGGTGG
TCAAGCGCCAGTTCGGGCATGTGAAGGTGCGCTACCGGGGTTTGGCCAAGAACACGGCGCAGCTGCACACGCTGTTTGCGCTGGCCAACCTGTGGCTGGC
GCGCCGCCAACTCCTGGGAGCGGGGGCATGAGTGCGCCCGAAATGGGCCTGCGGGGCCGCCACGGCCACCGAATCGGCGGGAGTGTCGGTGCATTTGGGC
CGAAGGGGGCATCGCAGACATTCGATTTCGAGTCACTCGGGGCGCAGGCACGGTTCAGGGTGCTTTGTGCAGACCTTCC
GGCCAAGCGCACGCGGCGGCGCGAGTTTCTGGAAGAGATGGAACGCGTGGTGCCCTGGGCCGACTTGGTGGCGCTGGTGTCGCCCTACCTGCCCGAGGGC
CGGCGCGGACGTCCGCCGTTTGCCCCGGAGACCATGCTGCGCATCCACTTCATGCAGCAGTGGTTCAACCTGAGCGACCCGGCCATGGAAGAGGCGCTGC
ACGACGTGCCGCTGTTCCGCGAGTTCGCCGGGCTGGAAGGCTGGGAAGAACGGCTGCCCGACGAGAGCACCATCCTGAGGTTCCGCCACGTGCTCGAACA
GCACCAGCTGGCCGCCCAGATCCTGAAGACCGTCAACGACCTGCTGGGCGCCAAGGGGCTGCTGCTCAGGAGCGGCACGGTGGTCGATGCCACACTCATC
GCAGCCCCGAGCTCCACCAAGAACGCCTCGGGGCAGCGTGATCCCGAGATGAAGCAAAGCCGCAAGGGCCAGCAGTGGTACTTCGGCATGAAGTGCCACA
TCGGCGTGGATGCCGACTCGGGCCTGGTGCACACCGTGCGCGGCACTGGCGGGCACGTCAACGACGTGGTCGAGGCCGCCAGCCTGCTGCACGGACAGGA
GCGCGACGTGTTTGCCGATGCGGGCTACCAGGGTGCGGGCAAACGAGCCGACGCCCCGCCCGGAGTGCAGTGGCACATCGCCATGAAGCCGGGGCAGCGC
CGGGTGCTGGATCCGGCCGATCCCATAGAGGGGCTGACCGAGCAGCTCGAGCGGCTGAAGGCGCGCATCCGGGCCAAGGTGGAACATCCCTTCCGGGTGG
TCAAGCGCCAGTTCGGGCATGTGAAGGTGCGCTACCGGGGTTTGGCCAAGAACACGGCGCAGCTGCACACGCTGTTTGCGCTGGCCAACCTGTGGCTGGC
GCGCCGCCAACTCCTGGGAGCGGGGGCATGAGTGCGCCCGAAATGGGCCTGCGGGGCCGCCACGGCCACCGAATCGGCGGGAGTGTCGGTGCATTTGGGC
CGAAGGGGGCATCGCAGACATTCGATTTCGAGTCACTCGGGGCGCAGGCACGGTTCAGGGTGCTTTGTGCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 69 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MKQHSLGLGMTAKRTRRREFLEEMERVVPWADLVALVSPYLPEGRRGRPPFAPETMLRIHFMQQWFNLSDPAMEEALHDVPLFREFAGLEGWEERLPDES
TILRFRHVLEQHQLAAQILKTVNDLLGAKGLLLRSGTVVDATLIAAPSSTKNASGQRDPEMKQSRKGQQWYFGMKCHIGVDADSGLVHTVRGTGGHVNDV
VEAASLLHGQERDVFADAGYQGAGKRADAPPGVQWHIAMKPGQRRVLDPADPIEGLTEQLERLKARIRAKVEHPFRVVKRQFGHVKVRYRGLAKNTAQLH
TLFALANLWLARRQLLGAGA
TILRFRHVLEQHQLAAQILKTVNDLLGAKGLLLRSGTVVDATLIAAPSSTKNASGQRDPEMKQSRKGQQWYFGMKCHIGVDADSGLVHTVRGTGGHVNDV
VEAASLLHGQERDVFADAGYQGAGKRADAPPGVQWHIAMKPGQRRVLDPADPIEGLTEQLERLKARIRAKVEHPFRVVKRQFGHVKVRYRGLAKNTAQLH
TLFALANLWLARRQLLGAGA
Blast result :
Comments
ISPa96 is 90% aa similar to ISBmu20.
References
1] Mick Chandler (2018) Direct submission.
2] Snesrud,E., Ong,A.C., Kwak,Y.I., Jones,A.R., Hinkle,M.K. and McGann,P. (2018) Direct GenBank submission.
2] Snesrud,E., Ong,A.C., Kwak,Y.I., Jones,A.R., Hinkle,M.K. and McGann,P. (2018) Direct GenBank submission.