TnDra1
- Family Tn3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP015084 | ND | Deinococcus radiodurans | Deinococcus radiodurans R1 plasmid CP1 |
DNA section
IS Length : 8954 bp
Ends
IR Length : 46/52
IRL : GGAGGTGGTTTAAGGAAGCTGCTACGAAGCGCAAAGTGAGGAGTTTCCCG
IRR : GGGGGTGGTTTAAGGAAGCTGCTATCAAGCGCAAAGTGAAGGCTTTCCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTCCCCGTGCTCCCAGTTCGTGCG | GTCCA | GACTCAGCAAGACCTTCCCCGGTGG | 5 |
DNA sequence
GGAGGTGGTTTAAGGAAGCTGCTACGAAGCGCAAAGTGAGGAGTTTCCCGAGGCAGAATCAGGCGGATTGTTGGGCTTCCAATCTGCACAGCACCCGCTC
CAGCGCCCGTGCGTTGCCACTCTGGACACAGCACTCACAGATACAGACATCCAAGTCTCGATACACTCGCCAGCCCTTTGTCCCAGCGACCTCCCACGCC
TCCTCTTCATTCGCCTGCCGGGCTGTGCTGTCGCCGCAGGCGTCACAGAGAAGGTACACGCCCTGACCCTGGGGTCTGACGTGATTGCGGGTTCGCCAGG
CCGCTACCCCATCGAGGTGCGAGGAGACGGAAGACAACAGGGGGCTGGCCTTTCCCGCTCGCGCATCCTCAACAATGCGCGCTGTACGCGACTGCATCCG
GCGCATCAGTTCCGTGCCAGCCTGATCCATCGTGTAGACCGGCACATGCATGCCCTGGACATAGGCATGACCCACGATCACATGGTCCGGGAAGGCGGCG
CGGAGCCAGTCTTCCAGGTGATCGAGGGCTTCCCGGTAGGTCCGCTCAGCGATCAGGACGAACGCGTCGCGTTCGTCCTCGAACCGTAAGCAGTGGGTCA
GCGTCGGGCCCCACAATACGCGCCATTCCCGTACGCACGCTTGCAGCCGCAAGAAGTCAGGTTCAGACACCCGCTCAAGCCCCAGCAGCATCACGTCGGC
GGTACTCATTCTGTGAGAAGCATAGCCGTGGATGAAAGCCGTTTAAAGGTAGAAATCTACTGGTAGTCTTCTCCCACACCTTTGTGTGCGGTAGAAAACT
CGGCTGACCAGTCCCGCAATTCCTGACAGAATTACGTTATCCGCGTATTTCTCAGATTCGCCGGGAGGTCTCCTTGCTGGTCCGCAATGCACAGCTCCAG
GTCGTCAGCACCCAACCCCTCATCGCCCGCTTGCTCGAAGATGCGCTCCATGCCCGTCTCCCTGAATTTCCGGCCGCCTCGCTGGTCCTGGACTGGCCGG
TCGGCTTTGCCTTTCAGGTTGTGACGCCAGAATCGGCGGCCAGTAGCTTCGTCCTGACCCAGAACGCCTGTCCCGAGTACCTCGATGATCTGTGGAACCT
GGGCCTGCTGGGCTTGGCGTACCGGAGCCGCACCCTGGAGGAACTCGCGGAGTTACTGCGGCGTGCAGAAACCCAGGAGCGGGTCCGCTTGACGCCTGCT
CAGCGCTCTCCTTTGACGCCAGCGGAAGGGGACTTGCTGCGCCTGGTAGCACGCGGTCTCGCCAACAAGGAAATTGCCCGTGAGTTGGGGATTGCCAACC
AGACGGTGCAGAACGGGTTGACGCGCGTGTTTCAGAAACTTGGTTGCGACGGGCGCAGTGAAGCCATCCTGCACTACTGGGGGCTGACGGCTGCGACCAA
AGAGCCTCTCTGAATGCAGTTTGTTGCCTGAGCCTGCAATCGAACTCCCATGACGGCACCGCTCCTGATTCAAGGAGCGGTGCCTCCGTCTTTAAAAGCG
GTCGCCTATCCACAACGACGTGAGCGCACGGAACAGGGAGAAATCCGCCGGTAGCTCTGGACCAAAATTCCGGTAGAAACCGTTCTTTCGCACGAATTAT
GTCCAAAGCATACTCATTCGTGAGGTGGCCGCTTCGCTCAGCGTTGAGAACGACGGTCTCAACACGGTTCTCGCTCTTTCATGACCCATTTTTGGGAAAG
GAACAGACCATGCCTTACGACGTTTTGATTGATCCTGGACACGGTGGCGCCGACAGTGGCGCGGTAAATTCGAAGACCAACACTTTGGAAAAGAACTTGA
ACATGGATTCGTCTCTGTCTGTGGAGTATTTCCTCGGCCAACGCGGCAGGACGACGAAAATGACCCGCACCACGGATGTCGATATTGACAACTACCAGCG
CGCCTACCAGGGCGTCAGGGAAGGTGCCAAGATTTTCGTCTCGGTGCACCATGACTCTGCCGAGGTCGGCCGCTCGCTGGTGTACCACGACAACAAGGCT
GAATCGATTCGCCTCGCGAACAAGGTGGCAGGCTACATGGGGGGTATCTCGGTCGTGAGCATGAACCAGAGTCCCCACGGCCGCCTCTACATCGCTGATT
TCACGACCGGGCCGTCCATCCTGATCGAGATGGGGCCAACTCGCCCTTACACCCGTGATGAGCGGATCGCACGCTGTCAGCCTGCGGCCAACGCCATCGC
GGACTTCATCGCCAACAACTTCTCGTAAACTTTCCTGAAGATGCGGGCAGCCTGTGGCTGCCCGCATCTTTTCTGTTATGTCAGGCCAATGAGCACCGTC
CGGTAACTTTTTCCGTTGGAGAATTTGAGCGTTACGAGATAGCTGGTGAGATAATATCTGCTGCCATAACGCTTTTTCGCTTCTCTACGTAAGCGACCTT
GAGCATCGTCAAGCTTGAGAATAATCCGGTTGCTCTCAACCCTCCAGCCTGGCGTGCTCCCGGACTTATTGAGTACAAAGGACTGATGGCCCAGCATGTC
GCACTGACGCTCATCGCAGGCGTTGGTCTGATGCACGTAGGTCACGGTGACGCTGACTGGCACCACCATCTGGGTGGTACGCACGTATTCATCACTGCCG
ATCACCCCGTATAGCCCATCTGAGGCTTGCAGAAGATGCTGGCTGCGCGGCTGCACCTGGTAGATCAGCCGAAAGCTACCGTCTCGAAGCGTAGAAGGGC
CAGCCATGCCGCCCGTCAGACCCACACTGGAAAGCAGCAAAGCGCTGGTACAGGCACCTGTACGCCATACCTTAATCATAACCGCAGCATAAAGCAGTCG
TCTCTCCCTTCTTTTGGGTGACGCCGCTGGCTGCTGCAAGCTCTGATAATGGGGAGATTTCACGTCTTGTGGTGCTGTCGATAGGCAGATGGTATGGGAG
ACCGGCCAGCCTCAGCTCTCTAAGTCCAGGAGGAATAACGATGCGTAGAACCGTACGGCTCGCTCTATTTCAGTTTTTGGTCGCCACGCTGGCGAGTTTC
ACGCCTACCCTCGCCGCTAAGCCGAGCATGCAGTGGGCAGTGACGCGAAGCGCCACCCCGGCACCTTCTTCTGTTACCACCGATTCCACTCGGGTATATC
TGGTGGAAGGCCAGCGTCTTCAAGCCCGGCGACTGTCCGACGGTAAGTTAATCTGGCAAGCGGGAACTGGGATCAGCTCGCCCCTTGTGGTCGAACGGGG
CATAGTCTACGTCACAGGTCGGGCTCGCGAAGTCTTCGCTTTTAATGCGACTGACGGGCGAAAGCTCTGGTCCACGGTACTTACAGGCGTGCCAGAGCAG
TCACATGGCGGGTGGGCAGATACTCTCTCAGTTGACCACGGTATGCTCTTGGTTGCCTCCACACGAGGGATCTGGGGGGTAAACGCACGGACGGGCCAGC
AACGGTGGTTTCGCGAACTTCTTGATGCACGTGGCCCCTTAGTTCAGCTAGGGAGCATCACGGTCTGGCAGGTCTCTACGCCTCTCAAGAGTTTCACGTT
CGGCTTGCAATCGGAGACCGGCCGAGAAGTCTGGAGGGTGCAGACCGGGGCGACACCACTTCTTCAGGAAGATAAGTACGTGTTCGTGACGGTCCCCGGT
TCCCCGAGTGCTTACCGCATGATCGATGTCCCGAGCGGTCGCAGTATTCGGGTGGATCACAACTTCAGAGTTGGTGCCCCTTCAGGACAGCAACCGGCTC
AGGGAACACCTGGAGAGCTATTTGTGACAGGGATGGAGGTTTGCGTCCGCGTGACAAACGGTGAGGTTGACCGATTGAATTGCGTGAACCGGCAGCAGGG
CCGGAGGACCGGAGGAGAGGCAGATTTATTGAGGCAAGCGCTGGGTGAGCACCCTGTAAAAGTGCGTCGTCTCTTGAATGCCAGTCTTCCCTCTGGCTGT
GTGGGCACAGCAGTCAAGACCGCTGTAGGGGTCGTGCTGGTCGATGCACCGGACATGACTAAGACCCGGCTTTCTCAATTGCCGTCTCGGGCGTTTGCCT
GCTTCTTCCCTGTAAGCAACACCTTGAAGGTTGTTCCGGTAGGGGGGCAACTCATTGCCATTGACGAGAAAGGCAGACAAGTCTGGGTGGTTAACGTTCA
GGGGAGAGTCCAGCAGGTCATTCCTGTGGATGGGCGCTTATTGGTCGCCACCAGTGCTGAACTCCGCATACTCTCCTGGCCGTGAGCACACGAGGTAGGG
CCGCACTCCTGAGGAGTGCGGCCCCATTACAGCCAACTTCAGCTAATGATGCCGACCATGGTCTTGACCTTGCGGCCGTCGCCCGCATTCCGGAACTCTG
CACACAGCATCTGAGCTGAGCCGCTCGAGTCCAGGAAAATGCCGTCGAGGGCACCGAGGGTCTGTTTAATGGCTTGGCGGAACTGCCCGGCGGTGGCTCC
AAGCTGGCCACTCGCGGTCATAACGAGGTAGACATAACCCGCCTCGTTGTATACCAGGCCTGCACGCTGGATCACGCCGTCGGGGTTAGGGAGGTTTTGC
TGTGTGACTGCGATGTCCCTCCAGTTGGCGTCGTTCTGGAGGCTCATGCTCACGCCGCCCTGCGCCCAGTAATTGCTACGGTTGGTCACCGAAATTTGGC
TGGCGTTACTCACAACGCGGACCCCGATGGTTCGGCTCACGGTGTCGTGGAAGACGGTTCCGCGCGCATAGCCCACATTGGCCCAGCCGCTGCCGTAGCT
TGTGTCTTGATAAATTAGGCTGCCAACAGGAACGTCGTTGTTGACGGTCAGGGAAAGGAGGGGTTGACTTTCAATGGGCTCTCCGAGAATGTAAAAACCC
CCGTTGATTCCGTAATGTCCGCTGGCGGTTACATTGCTGTTGATGCGTCGCAGAACGATATTGCTGGCCGTGGTCTTCATATAGTGAAGTGTGATGCCGT
TGTACGTTGCTTTTCCGTAGACGTAAGCCATGTTGTTTCTCCTTGAGATGAAGTACTGAAGCGGCCGCTTCGAGAGTTAGTATGCTTCTGGCGTAGTTTT
CCTGCGAGAGTGTTTTCTACCGTAATCTCAAGGAGAACTCCTGTGAGACTTCTCCTTGGGCTCGAGGATCTAGAGTGCCGAGTCTCTGCTTGGTATTGGC
ACTTCCCTCAATGCTGGTGGGAGGTGTACCCTGCGGTGCCCCTACAGCACGCGCCATGGTGACCGACACTTCTCTGGAAGTACCGTCACTGCCGATTCCC
GGCACTTTTTCAGGGAGGCTCCATGCAGCAGCGCTGGACCATCGACGAACTCATCGACACCTGGACGCTGCTGCCCACCGAGACCGACCTGCTGCGGAAC
AAGACCGGCCCCACCCGCCTGGGCTTCGCCGTCATGCTCAAGGCCTTCCAGCACGAGGGCCGTTTCCCCTACAACACCCATGAGGTGCCCGAAGCCGTCG
TTGAGTACGTCGCCCGGCAGGTCGGCGTGGCGACCGACGAGTACCGGGCCTTCAATTGGCGCAGCCGCAACAGCAGCTACCAGCGTCAGGACATCCGGGC
GTTCTGTGGGTTCCGCGAGTTCATTACCGAGGATGCGGGCACGCTGACGGACTGGCTGAGCCAGTCCGTCGTTCCGCACGAGGCACACTCCGGCGCTGTG
ACCGAAGCTGCTCTGCGCTGGCTCCGCGAGAACGGTATCGAGCCGCCCAGCCCCGGGCGGCTCCAGCGGTTCGTGGACGCGGCGGAACGGCACTATGACC
TGCGCCTGTGTCAGACCATCCACGACCGCTTGAGCACCGATCACCGGGCAGGGCTGGAGGCGCTGCTGAGGCTGACGGTATTGGAGGAAGACCAGCCGGA
AGACCACGAGGGCCAAGGCCCTCGTGGCTCAGCCCTGCAACACCTGCGGACCAACTCCGAGAAACGCGGTGTGGAGAGCGTGGAAGAGCAGATCGAGAAA
CTGCGCCTGCTTCGCCGGTTGAAGCTCCCCCAGACGCTTTTCGCGGACGTGGCCCCCCACGTCCTGACCCGTTACCGCGAGCGGGCCTCCAACGAGTCCC
CCAGTCACTTTCGTGCCCAGATCCCACCTGTGCGTCTCACGCTCCTGGCCGCTTTCTGTGCTGCGCGTGCCGCCGAGTTGACTGATGCCCTGGTGACGCA
CCTGATGGACATGGTTCACCACATCAACGTCAAAGCCGAGCGGCGGGTCGAGCGCAACTTCGTGGCCGAGTTCCGGCGGGTCCATAACAAGGACCGCATT
CTGGAGCGGCTGCTGGAGGCCGCGCTGGGGAGTCCCGACGGCACCGTACGTGAGGTGCTGTTCCCAGTGGTGGACGAGCAGACCCTGCGTGACCTGCTGC
GTGAGTACAAGGAGAAGGGAGGCTTCCGGCAGCAGGTCCACACCATCGTGCGCGGCACCTACCGCAGCCACTACCGGCGGATGATCCCCTGGCTGCTCAC
CGAACTGTCGTTCCGGTCCAACAATCACCGGCACCAGCCGGTGATCGACGCCCTGAGCCTGCTGGGGCGGTATGTGGACAGCAACGCGAGAATCTACCCG
TCCGAGGAACACATCCCGGTCGGTGGCGTGATCGACCGGAACATCCGTGACCTGATTCTCGAACGGGGGCCGGATGGTGGAACGCGCGTCAACCGCGTGA
ATTACGAGCTGTGCGTCCTGTCCGCGCTGCGGGACGCTCTGCGTTCCCGCGAAATCTGGGTGGTCGGGGCCGACAAGTACCGCGACCCCGACAAGGACCT
GCCCCAGGACTTCGAGGCCCGCAAGGAAAGTTACTTCCAGGCGCTGAGACAGCCGCAGGAGGTGGACACCTTCGTGCAGGGTCTGGAGCAGCAGCTCAAG
GACGCCCTGGTGATGCTGCACGACGGCTTGCCGAAGAATCCTGGCGTGCGGGTGGTCGCGCGGGACGGGGGCCGCTTCGTGGTCACGCCCCTGACCCGGC
AGCCGGACCCGCCCTTCTACGACACCTTGAAGGGCGAGGTGGGGCGGCAGTTCTGGAACACCCAGTTGCTCGATGTCCTGGTCGAGGTGGACCGACGTGC
AGGGATTACCCCGCACTTCAAGAGCTTCATGACGCGCGAGAACATGCCGCGTGACCAGCTCCAGCAGCGCTTGCTGCTGTGCCTGTACGGCCTGGGGACG
AACACGGGACTGAAGCGGGTGGCCGCCGGGCAGGACGGGGTCGGGTACTCGGACCTGAAGTACGTCCGGCGGCATTACATCCACCGCGACGCGCTGCGGG
CGGCGAACGCCGCGGTGGTGAACGCCACGCTGGCCGCGCGCCGCCCGGACATCTGGGGCGAGGGGACCACCAGTTGCGCCAGTGATGCCAAGAAATACGC
CGCCTGGGACGGGAACCTGCGGACGCAGCGGTCTATCCGGTACGGCGGGGACGGGGTGATGATCTACTGGCACGTCGAGAGACGGGCCAGTTGCATCTAC
TCCAGCATGAAGTCCTGCTCGTCGTCGGAAGTCGCCGCGATGATCGAGGGCGTGCTGCGTCACTGCACCACGCTGTCCGTCGAGAAGAACTACGTGGATA
CCCATGGGCAGAGCGAGCCGGGCTTCGCCTTCACGCACCTGCTGGGATTCAAACTGATGCCCCGTCTGGCGGACATCGCCCATCAGCGGCTTTACCTGCC
GAATATGGCGTTCGCGGCGCAGGTGCCGAACCTCGCCGCTGTGCAGGCACAGCGGTCGATCCGCTGGGACCTCATCCGCCAGCAGTACGAGCCGATGGTC
AAGTACGCGACGGCTCTGCGGCTGGGGCTGGCCGACCCCAAAGCCATTCTGCAACGCTTCACCCGGGCCAACGCCCAGCATCCGACCTACGCAGCCCTGT
GCGAACTGGGGAAGGTGCTGCGGACGATCTTCGTCTGCGAGTACCTGCACCGGGAGGAGGTGCGCCGGGAGATTCACGAGGGGCTGAATGTCATCGAAAC
TTGGAACGGCACGACCAACTTCATCTTTTTCGGCAAGGGTGGGGAGATCAGCACCAACAACCTCGAAGGGCAGGAAATCTCCATGCTGGCGCTGCAACTG
CTGCAAAACAGCCTGGTGTACGTCAACACCCTGATGATCCAGCGGGTGCTGGGCAGCGAAACTTGGCGACAGCGGATGACCGCCGAGGACTGGCGGGCCC
TGTCCCCCCTGATGCACCACCACATCAACCCATACGGGGAGTTCAAACTGGACCTGACCCACAGGCTCAAGCTGGAGGTCGAGGTGGACGCATGACACAG
ACGCGGCGCACCGGGGCGAAGAAGAAAGCGCGTGAACTGGCGAAACTGCTGCGGGCTGAGCGGCCAGACTACGCCTACCTCAAGGAAGTGTTCCGTCATC
TGCGGGCCGAACTGGAAGTGGAGGTGCCGGGACCGTCACGCCGTCTGCCGTGGGTGCCGACCGAGGAGCAGGTGCGGGCGTTCTACGAGGCGGTGTGGCG
CACGCGCCGCACCGCTGACCTCGTGCTGATCAAGACCTTCCTGTACACCGGTGTACGCGTGTCCGAACTGGTGATGATGCGCCTCGCGGACGTGGACCTG
GACGCCTGCCAGATCCGGGTAAACCTGGGGAAGGGGAGCAAGGACCGGGTGGTGCCGTTCCCAGCACCCTTCAAGGAGACGCTGGCGCTTCATATCGGCC
AGAGACGACAACAGGGAGGAATCTACCTGTTCGAGTCGTCGTGGAAACGTCGCTACAGCGACCGGGGCGTGCGGCGGATGTTCGAGCGGTACACGGCCCT
GGCGGAGATCGACCGCAGCCTGTCGCCGCACAAGCTGCGGCATTTCCTGCTGACCTGGCTCAAGAAACAGGGCCTCGACGACGCGCTGATTCAGCCGTAC
AGCGGCCATGCTTCCCGGCAGTCGTTAGAAATCTACTCGCGGCTGGCGCTGGGCGAGGCCCAGCGCGAGTACGACCGGGTGATCGGGCGTTTTCCTGTAT
AGCTCGGGAAAGCCTTCACTTTGCGCTTGATAGCAGCTTCCTTAAACCACCCCC
CAGCGCCCGTGCGTTGCCACTCTGGACACAGCACTCACAGATACAGACATCCAAGTCTCGATACACTCGCCAGCCCTTTGTCCCAGCGACCTCCCACGCC
TCCTCTTCATTCGCCTGCCGGGCTGTGCTGTCGCCGCAGGCGTCACAGAGAAGGTACACGCCCTGACCCTGGGGTCTGACGTGATTGCGGGTTCGCCAGG
CCGCTACCCCATCGAGGTGCGAGGAGACGGAAGACAACAGGGGGCTGGCCTTTCCCGCTCGCGCATCCTCAACAATGCGCGCTGTACGCGACTGCATCCG
GCGCATCAGTTCCGTGCCAGCCTGATCCATCGTGTAGACCGGCACATGCATGCCCTGGACATAGGCATGACCCACGATCACATGGTCCGGGAAGGCGGCG
CGGAGCCAGTCTTCCAGGTGATCGAGGGCTTCCCGGTAGGTCCGCTCAGCGATCAGGACGAACGCGTCGCGTTCGTCCTCGAACCGTAAGCAGTGGGTCA
GCGTCGGGCCCCACAATACGCGCCATTCCCGTACGCACGCTTGCAGCCGCAAGAAGTCAGGTTCAGACACCCGCTCAAGCCCCAGCAGCATCACGTCGGC
GGTACTCATTCTGTGAGAAGCATAGCCGTGGATGAAAGCCGTTTAAAGGTAGAAATCTACTGGTAGTCTTCTCCCACACCTTTGTGTGCGGTAGAAAACT
CGGCTGACCAGTCCCGCAATTCCTGACAGAATTACGTTATCCGCGTATTTCTCAGATTCGCCGGGAGGTCTCCTTGCTGGTCCGCAATGCACAGCTCCAG
GTCGTCAGCACCCAACCCCTCATCGCCCGCTTGCTCGAAGATGCGCTCCATGCCCGTCTCCCTGAATTTCCGGCCGCCTCGCTGGTCCTGGACTGGCCGG
TCGGCTTTGCCTTTCAGGTTGTGACGCCAGAATCGGCGGCCAGTAGCTTCGTCCTGACCCAGAACGCCTGTCCCGAGTACCTCGATGATCTGTGGAACCT
GGGCCTGCTGGGCTTGGCGTACCGGAGCCGCACCCTGGAGGAACTCGCGGAGTTACTGCGGCGTGCAGAAACCCAGGAGCGGGTCCGCTTGACGCCTGCT
CAGCGCTCTCCTTTGACGCCAGCGGAAGGGGACTTGCTGCGCCTGGTAGCACGCGGTCTCGCCAACAAGGAAATTGCCCGTGAGTTGGGGATTGCCAACC
AGACGGTGCAGAACGGGTTGACGCGCGTGTTTCAGAAACTTGGTTGCGACGGGCGCAGTGAAGCCATCCTGCACTACTGGGGGCTGACGGCTGCGACCAA
AGAGCCTCTCTGAATGCAGTTTGTTGCCTGAGCCTGCAATCGAACTCCCATGACGGCACCGCTCCTGATTCAAGGAGCGGTGCCTCCGTCTTTAAAAGCG
GTCGCCTATCCACAACGACGTGAGCGCACGGAACAGGGAGAAATCCGCCGGTAGCTCTGGACCAAAATTCCGGTAGAAACCGTTCTTTCGCACGAATTAT
GTCCAAAGCATACTCATTCGTGAGGTGGCCGCTTCGCTCAGCGTTGAGAACGACGGTCTCAACACGGTTCTCGCTCTTTCATGACCCATTTTTGGGAAAG
GAACAGACCATGCCTTACGACGTTTTGATTGATCCTGGACACGGTGGCGCCGACAGTGGCGCGGTAAATTCGAAGACCAACACTTTGGAAAAGAACTTGA
ACATGGATTCGTCTCTGTCTGTGGAGTATTTCCTCGGCCAACGCGGCAGGACGACGAAAATGACCCGCACCACGGATGTCGATATTGACAACTACCAGCG
CGCCTACCAGGGCGTCAGGGAAGGTGCCAAGATTTTCGTCTCGGTGCACCATGACTCTGCCGAGGTCGGCCGCTCGCTGGTGTACCACGACAACAAGGCT
GAATCGATTCGCCTCGCGAACAAGGTGGCAGGCTACATGGGGGGTATCTCGGTCGTGAGCATGAACCAGAGTCCCCACGGCCGCCTCTACATCGCTGATT
TCACGACCGGGCCGTCCATCCTGATCGAGATGGGGCCAACTCGCCCTTACACCCGTGATGAGCGGATCGCACGCTGTCAGCCTGCGGCCAACGCCATCGC
GGACTTCATCGCCAACAACTTCTCGTAAACTTTCCTGAAGATGCGGGCAGCCTGTGGCTGCCCGCATCTTTTCTGTTATGTCAGGCCAATGAGCACCGTC
CGGTAACTTTTTCCGTTGGAGAATTTGAGCGTTACGAGATAGCTGGTGAGATAATATCTGCTGCCATAACGCTTTTTCGCTTCTCTACGTAAGCGACCTT
GAGCATCGTCAAGCTTGAGAATAATCCGGTTGCTCTCAACCCTCCAGCCTGGCGTGCTCCCGGACTTATTGAGTACAAAGGACTGATGGCCCAGCATGTC
GCACTGACGCTCATCGCAGGCGTTGGTCTGATGCACGTAGGTCACGGTGACGCTGACTGGCACCACCATCTGGGTGGTACGCACGTATTCATCACTGCCG
ATCACCCCGTATAGCCCATCTGAGGCTTGCAGAAGATGCTGGCTGCGCGGCTGCACCTGGTAGATCAGCCGAAAGCTACCGTCTCGAAGCGTAGAAGGGC
CAGCCATGCCGCCCGTCAGACCCACACTGGAAAGCAGCAAAGCGCTGGTACAGGCACCTGTACGCCATACCTTAATCATAACCGCAGCATAAAGCAGTCG
TCTCTCCCTTCTTTTGGGTGACGCCGCTGGCTGCTGCAAGCTCTGATAATGGGGAGATTTCACGTCTTGTGGTGCTGTCGATAGGCAGATGGTATGGGAG
ACCGGCCAGCCTCAGCTCTCTAAGTCCAGGAGGAATAACGATGCGTAGAACCGTACGGCTCGCTCTATTTCAGTTTTTGGTCGCCACGCTGGCGAGTTTC
ACGCCTACCCTCGCCGCTAAGCCGAGCATGCAGTGGGCAGTGACGCGAAGCGCCACCCCGGCACCTTCTTCTGTTACCACCGATTCCACTCGGGTATATC
TGGTGGAAGGCCAGCGTCTTCAAGCCCGGCGACTGTCCGACGGTAAGTTAATCTGGCAAGCGGGAACTGGGATCAGCTCGCCCCTTGTGGTCGAACGGGG
CATAGTCTACGTCACAGGTCGGGCTCGCGAAGTCTTCGCTTTTAATGCGACTGACGGGCGAAAGCTCTGGTCCACGGTACTTACAGGCGTGCCAGAGCAG
TCACATGGCGGGTGGGCAGATACTCTCTCAGTTGACCACGGTATGCTCTTGGTTGCCTCCACACGAGGGATCTGGGGGGTAAACGCACGGACGGGCCAGC
AACGGTGGTTTCGCGAACTTCTTGATGCACGTGGCCCCTTAGTTCAGCTAGGGAGCATCACGGTCTGGCAGGTCTCTACGCCTCTCAAGAGTTTCACGTT
CGGCTTGCAATCGGAGACCGGCCGAGAAGTCTGGAGGGTGCAGACCGGGGCGACACCACTTCTTCAGGAAGATAAGTACGTGTTCGTGACGGTCCCCGGT
TCCCCGAGTGCTTACCGCATGATCGATGTCCCGAGCGGTCGCAGTATTCGGGTGGATCACAACTTCAGAGTTGGTGCCCCTTCAGGACAGCAACCGGCTC
AGGGAACACCTGGAGAGCTATTTGTGACAGGGATGGAGGTTTGCGTCCGCGTGACAAACGGTGAGGTTGACCGATTGAATTGCGTGAACCGGCAGCAGGG
CCGGAGGACCGGAGGAGAGGCAGATTTATTGAGGCAAGCGCTGGGTGAGCACCCTGTAAAAGTGCGTCGTCTCTTGAATGCCAGTCTTCCCTCTGGCTGT
GTGGGCACAGCAGTCAAGACCGCTGTAGGGGTCGTGCTGGTCGATGCACCGGACATGACTAAGACCCGGCTTTCTCAATTGCCGTCTCGGGCGTTTGCCT
GCTTCTTCCCTGTAAGCAACACCTTGAAGGTTGTTCCGGTAGGGGGGCAACTCATTGCCATTGACGAGAAAGGCAGACAAGTCTGGGTGGTTAACGTTCA
GGGGAGAGTCCAGCAGGTCATTCCTGTGGATGGGCGCTTATTGGTCGCCACCAGTGCTGAACTCCGCATACTCTCCTGGCCGTGAGCACACGAGGTAGGG
CCGCACTCCTGAGGAGTGCGGCCCCATTACAGCCAACTTCAGCTAATGATGCCGACCATGGTCTTGACCTTGCGGCCGTCGCCCGCATTCCGGAACTCTG
CACACAGCATCTGAGCTGAGCCGCTCGAGTCCAGGAAAATGCCGTCGAGGGCACCGAGGGTCTGTTTAATGGCTTGGCGGAACTGCCCGGCGGTGGCTCC
AAGCTGGCCACTCGCGGTCATAACGAGGTAGACATAACCCGCCTCGTTGTATACCAGGCCTGCACGCTGGATCACGCCGTCGGGGTTAGGGAGGTTTTGC
TGTGTGACTGCGATGTCCCTCCAGTTGGCGTCGTTCTGGAGGCTCATGCTCACGCCGCCCTGCGCCCAGTAATTGCTACGGTTGGTCACCGAAATTTGGC
TGGCGTTACTCACAACGCGGACCCCGATGGTTCGGCTCACGGTGTCGTGGAAGACGGTTCCGCGCGCATAGCCCACATTGGCCCAGCCGCTGCCGTAGCT
TGTGTCTTGATAAATTAGGCTGCCAACAGGAACGTCGTTGTTGACGGTCAGGGAAAGGAGGGGTTGACTTTCAATGGGCTCTCCGAGAATGTAAAAACCC
CCGTTGATTCCGTAATGTCCGCTGGCGGTTACATTGCTGTTGATGCGTCGCAGAACGATATTGCTGGCCGTGGTCTTCATATAGTGAAGTGTGATGCCGT
TGTACGTTGCTTTTCCGTAGACGTAAGCCATGTTGTTTCTCCTTGAGATGAAGTACTGAAGCGGCCGCTTCGAGAGTTAGTATGCTTCTGGCGTAGTTTT
CCTGCGAGAGTGTTTTCTACCGTAATCTCAAGGAGAACTCCTGTGAGACTTCTCCTTGGGCTCGAGGATCTAGAGTGCCGAGTCTCTGCTTGGTATTGGC
ACTTCCCTCAATGCTGGTGGGAGGTGTACCCTGCGGTGCCCCTACAGCACGCGCCATGGTGACCGACACTTCTCTGGAAGTACCGTCACTGCCGATTCCC
GGCACTTTTTCAGGGAGGCTCCATGCAGCAGCGCTGGACCATCGACGAACTCATCGACACCTGGACGCTGCTGCCCACCGAGACCGACCTGCTGCGGAAC
AAGACCGGCCCCACCCGCCTGGGCTTCGCCGTCATGCTCAAGGCCTTCCAGCACGAGGGCCGTTTCCCCTACAACACCCATGAGGTGCCCGAAGCCGTCG
TTGAGTACGTCGCCCGGCAGGTCGGCGTGGCGACCGACGAGTACCGGGCCTTCAATTGGCGCAGCCGCAACAGCAGCTACCAGCGTCAGGACATCCGGGC
GTTCTGTGGGTTCCGCGAGTTCATTACCGAGGATGCGGGCACGCTGACGGACTGGCTGAGCCAGTCCGTCGTTCCGCACGAGGCACACTCCGGCGCTGTG
ACCGAAGCTGCTCTGCGCTGGCTCCGCGAGAACGGTATCGAGCCGCCCAGCCCCGGGCGGCTCCAGCGGTTCGTGGACGCGGCGGAACGGCACTATGACC
TGCGCCTGTGTCAGACCATCCACGACCGCTTGAGCACCGATCACCGGGCAGGGCTGGAGGCGCTGCTGAGGCTGACGGTATTGGAGGAAGACCAGCCGGA
AGACCACGAGGGCCAAGGCCCTCGTGGCTCAGCCCTGCAACACCTGCGGACCAACTCCGAGAAACGCGGTGTGGAGAGCGTGGAAGAGCAGATCGAGAAA
CTGCGCCTGCTTCGCCGGTTGAAGCTCCCCCAGACGCTTTTCGCGGACGTGGCCCCCCACGTCCTGACCCGTTACCGCGAGCGGGCCTCCAACGAGTCCC
CCAGTCACTTTCGTGCCCAGATCCCACCTGTGCGTCTCACGCTCCTGGCCGCTTTCTGTGCTGCGCGTGCCGCCGAGTTGACTGATGCCCTGGTGACGCA
CCTGATGGACATGGTTCACCACATCAACGTCAAAGCCGAGCGGCGGGTCGAGCGCAACTTCGTGGCCGAGTTCCGGCGGGTCCATAACAAGGACCGCATT
CTGGAGCGGCTGCTGGAGGCCGCGCTGGGGAGTCCCGACGGCACCGTACGTGAGGTGCTGTTCCCAGTGGTGGACGAGCAGACCCTGCGTGACCTGCTGC
GTGAGTACAAGGAGAAGGGAGGCTTCCGGCAGCAGGTCCACACCATCGTGCGCGGCACCTACCGCAGCCACTACCGGCGGATGATCCCCTGGCTGCTCAC
CGAACTGTCGTTCCGGTCCAACAATCACCGGCACCAGCCGGTGATCGACGCCCTGAGCCTGCTGGGGCGGTATGTGGACAGCAACGCGAGAATCTACCCG
TCCGAGGAACACATCCCGGTCGGTGGCGTGATCGACCGGAACATCCGTGACCTGATTCTCGAACGGGGGCCGGATGGTGGAACGCGCGTCAACCGCGTGA
ATTACGAGCTGTGCGTCCTGTCCGCGCTGCGGGACGCTCTGCGTTCCCGCGAAATCTGGGTGGTCGGGGCCGACAAGTACCGCGACCCCGACAAGGACCT
GCCCCAGGACTTCGAGGCCCGCAAGGAAAGTTACTTCCAGGCGCTGAGACAGCCGCAGGAGGTGGACACCTTCGTGCAGGGTCTGGAGCAGCAGCTCAAG
GACGCCCTGGTGATGCTGCACGACGGCTTGCCGAAGAATCCTGGCGTGCGGGTGGTCGCGCGGGACGGGGGCCGCTTCGTGGTCACGCCCCTGACCCGGC
AGCCGGACCCGCCCTTCTACGACACCTTGAAGGGCGAGGTGGGGCGGCAGTTCTGGAACACCCAGTTGCTCGATGTCCTGGTCGAGGTGGACCGACGTGC
AGGGATTACCCCGCACTTCAAGAGCTTCATGACGCGCGAGAACATGCCGCGTGACCAGCTCCAGCAGCGCTTGCTGCTGTGCCTGTACGGCCTGGGGACG
AACACGGGACTGAAGCGGGTGGCCGCCGGGCAGGACGGGGTCGGGTACTCGGACCTGAAGTACGTCCGGCGGCATTACATCCACCGCGACGCGCTGCGGG
CGGCGAACGCCGCGGTGGTGAACGCCACGCTGGCCGCGCGCCGCCCGGACATCTGGGGCGAGGGGACCACCAGTTGCGCCAGTGATGCCAAGAAATACGC
CGCCTGGGACGGGAACCTGCGGACGCAGCGGTCTATCCGGTACGGCGGGGACGGGGTGATGATCTACTGGCACGTCGAGAGACGGGCCAGTTGCATCTAC
TCCAGCATGAAGTCCTGCTCGTCGTCGGAAGTCGCCGCGATGATCGAGGGCGTGCTGCGTCACTGCACCACGCTGTCCGTCGAGAAGAACTACGTGGATA
CCCATGGGCAGAGCGAGCCGGGCTTCGCCTTCACGCACCTGCTGGGATTCAAACTGATGCCCCGTCTGGCGGACATCGCCCATCAGCGGCTTTACCTGCC
GAATATGGCGTTCGCGGCGCAGGTGCCGAACCTCGCCGCTGTGCAGGCACAGCGGTCGATCCGCTGGGACCTCATCCGCCAGCAGTACGAGCCGATGGTC
AAGTACGCGACGGCTCTGCGGCTGGGGCTGGCCGACCCCAAAGCCATTCTGCAACGCTTCACCCGGGCCAACGCCCAGCATCCGACCTACGCAGCCCTGT
GCGAACTGGGGAAGGTGCTGCGGACGATCTTCGTCTGCGAGTACCTGCACCGGGAGGAGGTGCGCCGGGAGATTCACGAGGGGCTGAATGTCATCGAAAC
TTGGAACGGCACGACCAACTTCATCTTTTTCGGCAAGGGTGGGGAGATCAGCACCAACAACCTCGAAGGGCAGGAAATCTCCATGCTGGCGCTGCAACTG
CTGCAAAACAGCCTGGTGTACGTCAACACCCTGATGATCCAGCGGGTGCTGGGCAGCGAAACTTGGCGACAGCGGATGACCGCCGAGGACTGGCGGGCCC
TGTCCCCCCTGATGCACCACCACATCAACCCATACGGGGAGTTCAAACTGGACCTGACCCACAGGCTCAAGCTGGAGGTCGAGGTGGACGCATGACACAG
ACGCGGCGCACCGGGGCGAAGAAGAAAGCGCGTGAACTGGCGAAACTGCTGCGGGCTGAGCGGCCAGACTACGCCTACCTCAAGGAAGTGTTCCGTCATC
TGCGGGCCGAACTGGAAGTGGAGGTGCCGGGACCGTCACGCCGTCTGCCGTGGGTGCCGACCGAGGAGCAGGTGCGGGCGTTCTACGAGGCGGTGTGGCG
CACGCGCCGCACCGCTGACCTCGTGCTGATCAAGACCTTCCTGTACACCGGTGTACGCGTGTCCGAACTGGTGATGATGCGCCTCGCGGACGTGGACCTG
GACGCCTGCCAGATCCGGGTAAACCTGGGGAAGGGGAGCAAGGACCGGGTGGTGCCGTTCCCAGCACCCTTCAAGGAGACGCTGGCGCTTCATATCGGCC
AGAGACGACAACAGGGAGGAATCTACCTGTTCGAGTCGTCGTGGAAACGTCGCTACAGCGACCGGGGCGTGCGGCGGATGTTCGAGCGGTACACGGCCCT
GGCGGAGATCGACCGCAGCCTGTCGCCGCACAAGCTGCGGCATTTCCTGCTGACCTGGCTCAAGAAACAGGGCCTCGACGACGCGCTGATTCAGCCGTAC
AGCGGCCATGCTTCCCGGCAGTCGTTAGAAATCTACTCGCGGCTGGCGCTGGGCGAGGCCCAGCGCGAGTACGACCGGGTGATCGGGCGTTTTCCTGTAT
AGCTCGGGAAAGCCTTCACTTTGCGCTTGATAGCAGCTTCCTTAAACCACCCCC
Protein section
ORF number : 8
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
540 bp | 179 aa | 874 | 1413 | + | No |
Annotation : Helix-turn-helix transcriptional regulatorDescription : Transcriptional Regulator factor
ORF sequence :
MLVRNAQLQVVSTQPLIARLLEDALHARLPEFPAASLVLDWPVGFAFQVVTPESAASSFVLTQNACPEYLDDLWNLGLLGLAYRSRTLEELAELLRRAET
QERVRLTPAQRSPLTPAEGDLLRLVARGLANKEIARELGIANQTVQNGLTRVFQKLGCDGRSEAILHYWGLTAATKEPL
QERVRLTPAQRSPLTPAEGDLLRLVARGLANKEIARELGIANQTVQNGLTRVFQKLGCDGRSEAILHYWGLTAATKEPL
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
651 bp | 216 aa | 709 | 59 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MSTADVMLLGLERVSEPDFLRLQACVREWRVLWGPTLTHCLRFEDERDAFVLIAERTYREALDHLEDWLRAAFPDHVIVGHAYVQGMHVPVYTMDQAGTE
LMRRMQSRTARIVEDARAGKASPLLSSVSSHLDGVAAWRTRNHVRPQGQGVYLLCDACGDSTARQANEEEAWEVAGTKGWRVYRDLDVCICECCVQSGNA
RALERVLCRLEAQQSA
LMRRMQSRTARIVEDARAGKASPLLSSVSSHLDGVAAWRTRNHVRPQGQGVYLLCDACGDSTARQANEEEAWEVAGTKGWRVYRDLDVCICECCVQSGNA
RALERVLCRLEAQQSA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
426 bp | 141 aa | 1803 | 2228 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDSSLSVEYFLGQRGRTTKMTRTTDVDIDNYQRAYQGVREGAKIFVSVHHDSAEVGRSLVYHDNKAESIRLANKVAGYMGGISVVSMNQSPHGRLYIADF
TTGPSILIEMGPTRPYTRDERIARCQPAANAIADFIANNFS
TTGPSILIEMGPTRPYTRDERIARCQPAANAIADFIANNFS
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
504 bp | 167 aa | 2779 | 2276 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MIKVWRTGACTSALLLSSVGLTGGMAGPSTLRDGSFRLIYQVQPRSQHLLQASDGLYGVIGSDEYVRTTQMVVPVSVTVTYVHQTNACDERQCDMLGHQS
FVLNKSGSTPGWRVESNRIILKLDDAQGRLRREAKKRYGSRYYLTSYLVTLKFSNGKSYRTVLIGLT
FVLNKSGSTPGWRVESNRIILKLDDAQGRLRREAKKRYGSRYYLTSYLVTLKFSNGKSYRTVLIGLT
Blast result :ORF 5
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 2941 | 4185 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRRTVRLALFQFLVATLASFTPTLAAKPSMQWAVTRSATPAPSSVTTDSTRVYLVEGQRLQARRLSDGKLIWQAGTGISSPLVVERGIVYVTGRAREVFA
FNATDGRKLWSTVLTGVPEQSHGGWADTLSVDHGMLLVASTRGIWGVNARTGQQRWFRELLDARGPLVQLGSITVWQVSTPLKSFTFGLQSETGREVWRV
QTGATPLLQEDKYVFVTVPGSPSAYRMIDVPSGRSIRVDHNFRVGAPSGQQPAQGTPGELFVTGMEVCVRVTNGEVDRLNCVNRQQGRRTGGEADLLRQA
LGEHPVKVRRLLNASLPSGCVGTAVKTAVGVVLVDAPDMTKTRLSQLPSRAFACFFPVSNTLKVVPVGGQLIAIDEKGRQVWVVNVQGRVQQVIPVDGRL
LVATSAELRILSWP
FNATDGRKLWSTVLTGVPEQSHGGWADTLSVDHGMLLVASTRGIWGVNARTGQQRWFRELLDARGPLVQLGSITVWQVSTPLKSFTFGLQSETGREVWRV
QTGATPLLQEDKYVFVTVPGSPSAYRMIDVPSGRSIRVDHNFRVGAPSGQQPAQGTPGELFVTGMEVCVRVTNGEVDRLNCVNRQQGRRTGGEADLLRQA
LGEHPVKVRRLLNASLPSGCVGTAVKTAVGVVLVDAPDMTKTRLSQLPSRAFACFFPVSNTLKVVPVGGQLIAIDEKGRQVWVVNVQGRVQQVIPVDGRL
LVATSAELRILSWP
Blast result :ORF 6
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
642 bp | 213 aa | 4880 | 4239 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MKTTASNIVLRRINSNVTASGHYGINGGFYILGEPIESQPLLSLTVNNDVPVGSLIYQDTSYGSGWANVGYARGTVFHDTVSRTIGVRVVSNASQISVTN
RSNYWAQGGVSMSLQNDANWRDIAVTQQNLPNPDGVIQRAGLVYNEAGYVYLVMTASGQLGATAGQFRQAIKQTLGALDGIFLDSSGSAQMLCAEFRNAG
DGRKVKTMVGIIS
RSNYWAQGGVSMSLQNDANWRDIAVTQQNLPNPDGVIQRAGLVYNEAGYVYLVMTASGQLGATAGQFRQAIKQTLGALDGIFLDSSGSAQMLCAEFRNAG
DGRKVKTMVGIIS
Blast result :ORF 7
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2973 bp | 990 aa | 5223 | 8195 | + | No |
Chemistry : DDE
ORF sequence :
MQQRWTIDELIDTWTLLPTETDLLRNKTGPTRLGFAVMLKAFQHEGRFPYNTHEVPEAVVEYVARQVGVATDEYRAFNWRSRNSSYQRQDIRAFCGFREF
ITEDAGTLTDWLSQSVVPHEAHSGAVTEAALRWLRENGIEPPSPGRLQRFVDAAERHYDLRLCQTIHDRLSTDHRAGLEALLRLTVLEEDQPEDHEGQGP
RGSALQHLRTNSEKRGVESVEEQIEKLRLLRRLKLPQTLFADVAPHVLTRYRERASNESPSHFRAQIPPVRLTLLAAFCAARAAELTDALVTHLMDMVHH
INVKAERRVERNFVAEFRRVHNKDRILERLLEAALGSPDGTVREVLFPVVDEQTLRDLLREYKEKGGFRQQVHTIVRGTYRSHYRRMIPWLLTELSFRSN
NHRHQPVIDALSLLGRYVDSNARIYPSEEHIPVGGVIDRNIRDLILERGPDGGTRVNRVNYELCVLSALRDALRSREIWVVGADKYRDPDKDLPQDFEAR
KESYFQALRQPQEVDTFVQGLEQQLKDALVMLHDGLPKNPGVRVVARDGGRFVVTPLTRQPDPPFYDTLKGEVGRQFWNTQLLDVLVEVDRRAGITPHFK
SFMTRENMPRDQLQQRLLLCLYGLGTNTGLKRVAAGQDGVGYSDLKYVRRHYIHRDALRAANAAVVNATLAARRPDIWGEGTTSCASDAKKYAAWDGNLR
TQRSIRYGGDGVMIYWHVERRASCIYSSMKSCSSSEVAAMIEGVLRHCTTLSVEKNYVDTHGQSEPGFAFTHLLGFKLMPRLADIAHQRLYLPNMAFAAQ
VPNLAAVQAQRSIRWDLIRQQYEPMVKYATALRLGLADPKAILQRFTRANAQHPTYAALCELGKVLRTIFVCEYLHREEVRREIHEGLNVIETWNGTTNF
IFFGKGGEISTNNLEGQEISMLALQLLQNSLVYVNTLMIQRVLGSETWRQRMTAEDWRALSPLMHHHINPYGEFKLDLTHRLKLEVEVDA
ITEDAGTLTDWLSQSVVPHEAHSGAVTEAALRWLRENGIEPPSPGRLQRFVDAAERHYDLRLCQTIHDRLSTDHRAGLEALLRLTVLEEDQPEDHEGQGP
RGSALQHLRTNSEKRGVESVEEQIEKLRLLRRLKLPQTLFADVAPHVLTRYRERASNESPSHFRAQIPPVRLTLLAAFCAARAAELTDALVTHLMDMVHH
INVKAERRVERNFVAEFRRVHNKDRILERLLEAALGSPDGTVREVLFPVVDEQTLRDLLREYKEKGGFRQQVHTIVRGTYRSHYRRMIPWLLTELSFRSN
NHRHQPVIDALSLLGRYVDSNARIYPSEEHIPVGGVIDRNIRDLILERGPDGGTRVNRVNYELCVLSALRDALRSREIWVVGADKYRDPDKDLPQDFEAR
KESYFQALRQPQEVDTFVQGLEQQLKDALVMLHDGLPKNPGVRVVARDGGRFVVTPLTRQPDPPFYDTLKGEVGRQFWNTQLLDVLVEVDRRAGITPHFK
SFMTRENMPRDQLQQRLLLCLYGLGTNTGLKRVAAGQDGVGYSDLKYVRRHYIHRDALRAANAAVVNATLAARRPDIWGEGTTSCASDAKKYAAWDGNLR
TQRSIRYGGDGVMIYWHVERRASCIYSSMKSCSSSEVAAMIEGVLRHCTTLSVEKNYVDTHGQSEPGFAFTHLLGFKLMPRLADIAHQRLYLPNMAFAAQ
VPNLAAVQAQRSIRWDLIRQQYEPMVKYATALRLGLADPKAILQRFTRANAQHPTYAALCELGKVLRTIFVCEYLHREEVRREIHEGLNVIETWNGTTNF
IFFGKGGEISTNNLEGQEISMLALQLLQNSLVYVNTLMIQRVLGSETWRQRMTAEDWRALSPLMHHHINPYGEFKLDLTHRLKLEVEVDA
Blast result :ORF 8
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
711 bp | 236 aa | 8192 | 8902 | + | No |
AG : Tn3 resolvase
ORF sequence :
MTQTRRTGAKKKARELAKLLRAERPDYAYLKEVFRHLRAELEVEVPGPSRRLPWVPTEEQVRAFYEAVWRTRRTADLVLIKTFLYTGVRVSELVMMRLAD
VDLDACQIRVNLGKGSKDRVVPFPAPFKETLALHIGQRRQQGGIYLFESSWKRRYSDRGVRRMFERYTALAEIDRSLSPHKLRHFLLTWLKKQGLDDALI
QPYSGHASRQSLEIYSRLALGEAQREYDRVIGRFPV
VDLDACQIRVNLGKGSKDRVVPFPAPFKETLALHIGQRRQQGGIYLFESSWKRRYSDRGVRRMFERYTALAEIDRSLSPHKLRHFLLTWLKKQGLDDALI
QPYSGHASRQSLEIYSRLALGEAQREYDRVIGRFPV
Blast result :
Comments
TnDra1 is 66% (transposase) aa similar tp ISNpu13
References
1] ISfinder annotation (2018)
2] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M. (1999) Science 286 (5444), 1571-1577.
2] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M. (1999) Science 286 (5444), 1571-1577.