ISPa95

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
Pseudomonas aeruginosa megaplasmid pVIM200
DNA section
IS Length : 1192 bp

Ends


IR Length : 18

IRL : GGAAATCCTGAAAAAGACTTCCTGATTTTGGCAAAATACCCGGACTCCAC
IRR : GGATGGTCTGAAATAGCCCTGTATTTCTGACTGACTTCAGCCTACGCTGA

Insertion site


Left flankDirect repeatRight flankDR Length
TCTGCTAGGTGATGAGTCTGTAATTGGCAATTCGCAG0

DNA sequence

GGAAATCCTGAAAAAGACTTCCTGATTTTGGCAAAATACCCGGACTCCACCCGCCGAGTTTTCCGATGAAGCAAATGACCTTCGCCGACGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGCAAAGAGCTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGGTTGATTGCCCTGATCGAGCCGCACTACCCG
AAGGGTGAAGGCGGTCGTCCGGCGTATCCGTTGATGGCGATGCTGCGCATACATCTGATGCAGAATTGGTTTGGCTACAGCGATCCGGCGATGGAGGAAG
CGCTGTACGAGACCACCATCCTGCGCCAGTTCGCCGGGTTGAGCCTGGAACGCATTCCTGATGAAACCACCATCCTCAACTTCCGTCGCCTGCTGGAAAA
ACATGAGCTGGCGGCCGGCATCCTCGGTGTGATCAACGGTTACCTGGGTGATCGTGGTCTGTCGCTGCGCCAGGGCACCATCGTCGATGCCACACTGATC
CATGCGCCGAGTTCGACCAAGAACAAGGACGGCAAGCGCGACCCGGAAATGCACCAGACCAAGAAAGGCCAGCAGTTCTACTTCGGCATGAAGGCGCACA
TCGGCGTGGATGACGAGTCGGGCCTGGTGCACAGCGTGGTGGGTACGGCGGCCAACGTTGCGGACGTTACTCAGGTCGACAAGTTGCTGCATGGCGACGA
GAACGTGGTTTGTACGGACGCGGGTTACACCGGCGTTGAGAAACGTCCAGAGCATGTCGATCGTAAGGTTATCTGGCAGGTGGCGGCACGCCGCAGCACC
TACAAGAAACTCGATAAGCGCAGCGCGCTGTACAAGGCCAAGCGCAAGATCGAGAAGGCCAAGGCCCAGGTGCGCGCCAAGGTCGAGCATCCATTTCGCG
TGATCAAGCGGCAGTTTGGCTACACCAAGGTGCGTTTCCGGGGGCTGGTGAAGAACACCGCGCAACTGGTGACGCTGTTCGCCCTGTCGAACCTATGGAT
GGCACGCCGACATTTACTGACGAATGCAGGAGAGGTGCGCTTGTAATGCAGAAAATGGCGCGGCGAGGTGCTCGCTGAGGCCAGAAACACCGAAATAAGC
GGGCGATTTGATCGTTTTTTGATCGGTTTACCGCTTTCAAAATCAGCGTAGGCTGAAGTCAGTCAGAAATACAGGGCTATTTCAGACCATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa661046+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDE
TTILNFRRLLEKHELAAGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGQQFYFGMKAHIGVDDESGLVHSVVGTAANVAD
VTQVDKLLHGDENVVCTDAGYTGVEKRPEHVDRKVIWQVAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLVKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL

 

Blast result :
Comments
ISPa95 is 98% aa similar to ISPa16.
References
1] Javier Escobar-Perez (2018) Direct submission.