ISHsal15
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 945 bp
Ends
IR Length : 20/25
IRL : CGCTCATCTCGACAAGTCGTAACATCAATTTGGATGGCGGATCAATGACC
IRR : CGCTCATCCCGATACATTGTAACATAGGAGTTTCTCGAACCAATCTTCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATATTCCTCTT | CACCTGTATTGA | 0 |
DNA sequence
CGCTCATCTCGACAAGTCGTAACATCAATTTGGATGGCGGATCAATGACCAGTCAACGATGGATGAGGAGTCCGCTCAAGTCTTCCTACCATCACGTGAG
CGATGTTTTGAACGTCTCCGTCTCGCCCGCTTCGGCGAGACGGTGACGTGTGTCCATTGCGAGAGCGACAACGTTGTGAAGCGAGGGACGACCGGTAAAG
ACGCCCAACAGCACTGGTGCAAGGAGTGTGAGACGTATTTCAACGACCTCACGAACACGATTTTCGGTCAGCATCGCTTCGAACTCGAAGAGATGTTCTA
CATCATCAAGGAGATGCGATCTGAGCCGACCGCTCAGATCGCTCGTGACCTTGGCCGAGACTACGAAGCTGTTCTCAACTTTGTCCACAAAGTCCAAGAC
GTGAGTGGGGAGATCGATGAATTTGAACTGTACGAGGTCTGTGAAGCTGACGAAGTCTACGTGACAGCCGGCGAGAAGGGGATCGAAGACGAAGATGAGA
GTCCGCGCGAGCGCGGACTCAAAAAAAGGGACGAGGACGATTCGAATCAGACAAACCGCCAGTGCTGACACTCGTCCGTCGCTCCGACGGACGAGTTCGG
TTTCTCGTCTGCAAGAATCTCCAAGGTACCGACGAAGACATCGCTGAGTATGGCGACGGCAGCGTCATCCTCTGTACTGACGATTACTCGATTTACGATG
GGATCGAGAACAAGGAGGGGGTGGACGGCCATCTGGCCGTCACCCACTCCGACACCTATGTCATCGGCGATGCCCACACAAACACCTGCGAGAACCGCCA
CAGTTTCCTTCGCCAGTGGCTGGCGAAGTTCAGGGGTGTCTCGAAGCATCATCTTCAGAAGTATCTCAACTTCCTTGCACTGAAGCTCAACTCACCCGAA
GATTGGTTCGAGAAACTCCTATGTTACAATGTATCGGGATGAGCG
CGATGTTTTGAACGTCTCCGTCTCGCCCGCTTCGGCGAGACGGTGACGTGTGTCCATTGCGAGAGCGACAACGTTGTGAAGCGAGGGACGACCGGTAAAG
ACGCCCAACAGCACTGGTGCAAGGAGTGTGAGACGTATTTCAACGACCTCACGAACACGATTTTCGGTCAGCATCGCTTCGAACTCGAAGAGATGTTCTA
CATCATCAAGGAGATGCGATCTGAGCCGACCGCTCAGATCGCTCGTGACCTTGGCCGAGACTACGAAGCTGTTCTCAACTTTGTCCACAAAGTCCAAGAC
GTGAGTGGGGAGATCGATGAATTTGAACTGTACGAGGTCTGTGAAGCTGACGAAGTCTACGTGACAGCCGGCGAGAAGGGGATCGAAGACGAAGATGAGA
GTCCGCGCGAGCGCGGACTCAAAAAAAGGGACGAGGACGATTCGAATCAGACAAACCGCCAGTGCTGACACTCGTCCGTCGCTCCGACGGACGAGTTCGG
TTTCTCGTCTGCAAGAATCTCCAAGGTACCGACGAAGACATCGCTGAGTATGGCGACGGCAGCGTCATCCTCTGTACTGACGATTACTCGATTTACGATG
GGATCGAGAACAAGGAGGGGGTGGACGGCCATCTGGCCGTCACCCACTCCGACACCTATGTCATCGGCGATGCCCACACAAACACCTGCGAGAACCGCCA
CAGTTTCCTTCGCCAGTGGCTGGCGAAGTTCAGGGGTGTCTCGAAGCATCATCTTCAGAAGTATCTCAACTTCCTTGCACTGAAGCTCAACTCACCCGAA
GATTGGTTCGAGAAACTCCTATGTTACAATGTATCGGGATGAGCG
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
510 bp | 169 aa | 59 | 568 | + | No |
Description : First part of the transposase
ORF sequence :
MDEESAQVFLPSRERCFERLRLARFGETVTCVHCESDNVVKRGTTGKDAQQHWCKECETYFNDLTNTIFGQHRFELEEMFYIIKEMRSEPTAQIARDLGR
DYEAVLNFVHKVQDVSGEIDEFELYEVCEADEVYVTAGEKGIEDEDESPRERGLKKRDEDDSNQTNRQC
DYEAVLNFVHKVQDVSGEIDEFELYEVCEADEVYVTAGEKGIEDEDESPRERGLKKRDEDDSNQTNRQC
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
444 bp | 147 aa | 499 | 942 | + | No |
Description : Second part of the transposase
ORF sequence :
ESARARTQKKGRGRFESDKPPVLTLVRRSDGRVRFLVCKNLQGTDEDIAEYGDGSVILCTDDYSIYDGIENKEGVDGHLAVTHSDTYVIGDAHTNTCENR
HSFLRQWLAKFRGVSKHHLQKYLNFLALKLNSPEDWFEKLLCYNVSG
HSFLRQWLAKFRGVSKHHLQKYLNFLALKLNSPEDWFEKLLCYNVSG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
884 bp | 293 aa | 59 | 942 | + | Yes |
Chemistry : DDE
ORF sequence :
MDEESAQVFLPSRERCFERLRLARFGETVTCVHCESDNVVKRGTTGKDAQQHWCKECETYFNDLTNTIFGQHRFELEEMFYIIKEMRSEPTAQIARDLGR
DYEAVLNFVHKVQDVSGEIDEFELYEVCEADEVYVTAGEKGIEDEDESPRERGLKKGRGRFESDKPPVLTLVRRSDGRVRFLVCKNLQGTDEDIAEYGDG
SVILCTDDYSIYDGIENKEGVDGHLAVTHSDTYVIGDAHTNTCENRHSFLRQWLAKFRGVSKHHLQKYLNFLALKLNSPEDWFEKLLCYNVSG
DYEAVLNFVHKVQDVSGEIDEFELYEVCEADEVYVTAGEKGIEDEDESPRERGLKKGRGRFESDKPPVLTLVRRSDGRVRFLVCKNLQGTDEDIAEYGDG
SVILCTDDYSIYDGIENKEGVDGHLAVTHSDTYVIGDAHTNTCENRHSFLRQWLAKFRGVSKHHLQKYLNFLALKLNSPEDWFEKLLCYNVSG
Blast result :
Comments
ISHsal15 is 96% aa similar to ISNpe28.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).