ISPrre2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY090559 ND Providencia rettgeri
Providencia rettgeri
DNA section
IS Length : 1053 bp

Ends


IR Length : 15/19

IRL : GGCGTTGTTGCCTAAATAAGCGGAACCTTTTTCGCTTTCCATGATCTGCT
IRR : GGCGTTGTTGATCAAATCATTCGCTTGAACGCAACTGCCCCTAGGCTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
CGCATACAGGCGTTGAAAGTGTTGTCTTT9

DNA sequence

GGCGTTGTTGCCTAAATAAGCGGAACCTTTTTCGCTTTCCATGATCTGCTCTTGCATAACAGGTCTTCGGTCAGTTTCATGGGTAAGTCAGAACGCAATA
TCACCAATTGGAAGCAATACAATCAGGCATTAGTAAACCGTGGTTCGGTTACCTTCTGGCTGGACGAGGCAGCGGTTAACGCTTGGCATTGCACAAAGCA
TCACGGCGGTCGTGGCCGTGGCTTTCAATTCAGCGACACCGCCATCGAAACCGCCTTGATGCTCAAAGGGATTTTTAAGCTGTCATTACGTGCGACCGAA
GGGTTCATCAACTCCCTGTTTCAGCTGATGAAAATACCGTTAATTGCCCCAGACTACAGCTGTATCAGTAAACGTGCCAAGACGGTGAACGTCAAGTACC
GCAATCCCTCAAGAGGTGCGGTAGCGCATGTTGTCGTTGATGCCACAGGCCTCAAAGTGTATGGCGAAGGTGAATGGAAAATGCGTAAGCATGGCAAAGA
AAAACGTCGGGTTTGGCGCAAGCTTCATTTGGCTATCGATGCCGCTACACATGAAATTATCGGTGCGCAAACCAGCCTTGAAACTGTAGCAGATAATGAA
GTACTTCCAGCGTTACTGGCTCCCCTAAGACGCAAGCTTAGACAAGTCTCCGCTGACGGAGCTTACGATACCAAAGCTTGTCATAAATTATTGCGACGAA
AGCAGGCGAAGCCAACGATTCCACCCCGCTCAAATGCCGGATACTGGGAACCAGGGCATCCTCGAAATGAAGCTGTGGATGCACTTAAGGCCGGAGAGTT
GAAGCAATGGAAATTGATGAATCACTACCATCAGCGTTCCTTATCTGAGACCGCCATGTATCGCTACAAACAACTCATTAGCGCCAAATTAAGTTTGCGT
GACTATAACGGACAAGTGGGTGAGGCATTGGCTGGGGTTAAGGCATTAAACAAAGTCATAAGACTGGGTATGCCTGTTCGCCAGAAAATCTCGTAAAGCA
GCTGAAAGCCTAGGGGCAGTTGCGTTCAAGCGAATGATTTGATCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
918 bp305 aa79996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

ATGGGTAAGTCAGAACGCAATATCACCAATTGGAAGCAATACAATCAGGCATTAGTAAACCGTGGTTCGGTTACCTTCTGGCTGGACGAGGCAGCGGTTA
ACGCTTGGCATTGCACAAAGCATCACGGCGGTCGTGGCCGTGGCTTTCAATTCAGCGACACCGCCATCGAAACCGCCTTGATGCTCAAAGGGATTTTTAA
GCTGTCATTACGTGCGACCGAAGGGTTCATCAACTCCCTGTTTCAGCTGATGAAAATACCGTTAATTGCCCCAGACTACAGCTGTATCAGTAAACGTGCC
AAGACGGTGAACGTCAAGTACCGCAATCCCTCAAGAGGTGCGGTAGCGCATGTTGTCGTTGATGCCACAGGCCTCAAAGTGTATGGCGAAGGTGAATGGA
AAATGCGTAAGCATGGCAAAGAAAAACGTCGGGTTTGGCGCAAGCTTCATTTGGCTATCGATGCCGCTACACATGAAATTATCGGTGCGCAAACCAGCCT
TGAAACTGTAGCAGATAATGAAGTACTTCCAGCGTTACTGGCTCCCCTAAGACGCAAGCTTAGACAAGTCTCCGCTGACGGAGCTTACGATACCAAAGCT
TGTCATAAATTATTGCGACGAAAGCAGGCGAAGCCAACGATTCCACCCCGCTCAAATGCCGGATACTGGGAACCAGGGCATCCTCGAAATGAAGCTGTGG
ATGCACTTAAGGCCGGAGAGTTGAAGCAATGGAAATTGATGAATCACTACCATCAGCGTTCCTTATCTGAGACCGCCATGTATCGCTACAAACAACTCAT
TAGCGCCAAATTAAGTTTGCGTGACTATAACGGACAAGTGGGTGAGGCATTGGCTGGGGTTAAGGCATTAAACAAAGTCATAAGACTGGGTATGCCTGTT
CGCCAGAAAATCTCGTAA

 

Blast result :
Comments
ISPrre2 is 90% aa similar to ISSpu14.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Boltner,D., MacMahon,C., Pembroke,J.T., Strike,P. and Osborn,A.M. (2002) J. Bacteriol. 184 (18), 5158-5169
3] Pembroke,J.T., MacMahon,C. and McGrath,B. (2002) Cell. Mol. Life Sci. 59 (12), 2055-2064.