ISPrre2
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY090559 | ND | Providencia rettgeri | Providencia rettgeri |
DNA section
IS Length : 1053 bp
Ends
IR Length : 15/19
IRL : GGCGTTGTTGCCTAAATAAGCGGAACCTTTTTCGCTTTCCATGATCTGCT
IRR : GGCGTTGTTGATCAAATCATTCGCTTGAACGCAACTGCCCCTAGGCTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCATACAGG | CGTTGAAAG | TGTTGTCTTT | 9 |
DNA sequence
GGCGTTGTTGCCTAAATAAGCGGAACCTTTTTCGCTTTCCATGATCTGCTCTTGCATAACAGGTCTTCGGTCAGTTTCATGGGTAAGTCAGAACGCAATA
TCACCAATTGGAAGCAATACAATCAGGCATTAGTAAACCGTGGTTCGGTTACCTTCTGGCTGGACGAGGCAGCGGTTAACGCTTGGCATTGCACAAAGCA
TCACGGCGGTCGTGGCCGTGGCTTTCAATTCAGCGACACCGCCATCGAAACCGCCTTGATGCTCAAAGGGATTTTTAAGCTGTCATTACGTGCGACCGAA
GGGTTCATCAACTCCCTGTTTCAGCTGATGAAAATACCGTTAATTGCCCCAGACTACAGCTGTATCAGTAAACGTGCCAAGACGGTGAACGTCAAGTACC
GCAATCCCTCAAGAGGTGCGGTAGCGCATGTTGTCGTTGATGCCACAGGCCTCAAAGTGTATGGCGAAGGTGAATGGAAAATGCGTAAGCATGGCAAAGA
AAAACGTCGGGTTTGGCGCAAGCTTCATTTGGCTATCGATGCCGCTACACATGAAATTATCGGTGCGCAAACCAGCCTTGAAACTGTAGCAGATAATGAA
GTACTTCCAGCGTTACTGGCTCCCCTAAGACGCAAGCTTAGACAAGTCTCCGCTGACGGAGCTTACGATACCAAAGCTTGTCATAAATTATTGCGACGAA
AGCAGGCGAAGCCAACGATTCCACCCCGCTCAAATGCCGGATACTGGGAACCAGGGCATCCTCGAAATGAAGCTGTGGATGCACTTAAGGCCGGAGAGTT
GAAGCAATGGAAATTGATGAATCACTACCATCAGCGTTCCTTATCTGAGACCGCCATGTATCGCTACAAACAACTCATTAGCGCCAAATTAAGTTTGCGT
GACTATAACGGACAAGTGGGTGAGGCATTGGCTGGGGTTAAGGCATTAAACAAAGTCATAAGACTGGGTATGCCTGTTCGCCAGAAAATCTCGTAAAGCA
GCTGAAAGCCTAGGGGCAGTTGCGTTCAAGCGAATGATTTGATCAACAACGCC
TCACCAATTGGAAGCAATACAATCAGGCATTAGTAAACCGTGGTTCGGTTACCTTCTGGCTGGACGAGGCAGCGGTTAACGCTTGGCATTGCACAAAGCA
TCACGGCGGTCGTGGCCGTGGCTTTCAATTCAGCGACACCGCCATCGAAACCGCCTTGATGCTCAAAGGGATTTTTAAGCTGTCATTACGTGCGACCGAA
GGGTTCATCAACTCCCTGTTTCAGCTGATGAAAATACCGTTAATTGCCCCAGACTACAGCTGTATCAGTAAACGTGCCAAGACGGTGAACGTCAAGTACC
GCAATCCCTCAAGAGGTGCGGTAGCGCATGTTGTCGTTGATGCCACAGGCCTCAAAGTGTATGGCGAAGGTGAATGGAAAATGCGTAAGCATGGCAAAGA
AAAACGTCGGGTTTGGCGCAAGCTTCATTTGGCTATCGATGCCGCTACACATGAAATTATCGGTGCGCAAACCAGCCTTGAAACTGTAGCAGATAATGAA
GTACTTCCAGCGTTACTGGCTCCCCTAAGACGCAAGCTTAGACAAGTCTCCGCTGACGGAGCTTACGATACCAAAGCTTGTCATAAATTATTGCGACGAA
AGCAGGCGAAGCCAACGATTCCACCCCGCTCAAATGCCGGATACTGGGAACCAGGGCATCCTCGAAATGAAGCTGTGGATGCACTTAAGGCCGGAGAGTT
GAAGCAATGGAAATTGATGAATCACTACCATCAGCGTTCCTTATCTGAGACCGCCATGTATCGCTACAAACAACTCATTAGCGCCAAATTAAGTTTGCGT
GACTATAACGGACAAGTGGGTGAGGCATTGGCTGGGGTTAAGGCATTAAACAAAGTCATAAGACTGGGTATGCCTGTTCGCCAGAAAATCTCGTAAAGCA
GCTGAAAGCCTAGGGGCAGTTGCGTTCAAGCGAATGATTTGATCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
918 bp | 305 aa | 79 | 996 | + | No |
Chemistry : DDE
ORF sequence :
ATGGGTAAGTCAGAACGCAATATCACCAATTGGAAGCAATACAATCAGGCATTAGTAAACCGTGGTTCGGTTACCTTCTGGCTGGACGAGGCAGCGGTTA
ACGCTTGGCATTGCACAAAGCATCACGGCGGTCGTGGCCGTGGCTTTCAATTCAGCGACACCGCCATCGAAACCGCCTTGATGCTCAAAGGGATTTTTAA
GCTGTCATTACGTGCGACCGAAGGGTTCATCAACTCCCTGTTTCAGCTGATGAAAATACCGTTAATTGCCCCAGACTACAGCTGTATCAGTAAACGTGCC
AAGACGGTGAACGTCAAGTACCGCAATCCCTCAAGAGGTGCGGTAGCGCATGTTGTCGTTGATGCCACAGGCCTCAAAGTGTATGGCGAAGGTGAATGGA
AAATGCGTAAGCATGGCAAAGAAAAACGTCGGGTTTGGCGCAAGCTTCATTTGGCTATCGATGCCGCTACACATGAAATTATCGGTGCGCAAACCAGCCT
TGAAACTGTAGCAGATAATGAAGTACTTCCAGCGTTACTGGCTCCCCTAAGACGCAAGCTTAGACAAGTCTCCGCTGACGGAGCTTACGATACCAAAGCT
TGTCATAAATTATTGCGACGAAAGCAGGCGAAGCCAACGATTCCACCCCGCTCAAATGCCGGATACTGGGAACCAGGGCATCCTCGAAATGAAGCTGTGG
ATGCACTTAAGGCCGGAGAGTTGAAGCAATGGAAATTGATGAATCACTACCATCAGCGTTCCTTATCTGAGACCGCCATGTATCGCTACAAACAACTCAT
TAGCGCCAAATTAAGTTTGCGTGACTATAACGGACAAGTGGGTGAGGCATTGGCTGGGGTTAAGGCATTAAACAAAGTCATAAGACTGGGTATGCCTGTT
CGCCAGAAAATCTCGTAA
ACGCTTGGCATTGCACAAAGCATCACGGCGGTCGTGGCCGTGGCTTTCAATTCAGCGACACCGCCATCGAAACCGCCTTGATGCTCAAAGGGATTTTTAA
GCTGTCATTACGTGCGACCGAAGGGTTCATCAACTCCCTGTTTCAGCTGATGAAAATACCGTTAATTGCCCCAGACTACAGCTGTATCAGTAAACGTGCC
AAGACGGTGAACGTCAAGTACCGCAATCCCTCAAGAGGTGCGGTAGCGCATGTTGTCGTTGATGCCACAGGCCTCAAAGTGTATGGCGAAGGTGAATGGA
AAATGCGTAAGCATGGCAAAGAAAAACGTCGGGTTTGGCGCAAGCTTCATTTGGCTATCGATGCCGCTACACATGAAATTATCGGTGCGCAAACCAGCCT
TGAAACTGTAGCAGATAATGAAGTACTTCCAGCGTTACTGGCTCCCCTAAGACGCAAGCTTAGACAAGTCTCCGCTGACGGAGCTTACGATACCAAAGCT
TGTCATAAATTATTGCGACGAAAGCAGGCGAAGCCAACGATTCCACCCCGCTCAAATGCCGGATACTGGGAACCAGGGCATCCTCGAAATGAAGCTGTGG
ATGCACTTAAGGCCGGAGAGTTGAAGCAATGGAAATTGATGAATCACTACCATCAGCGTTCCTTATCTGAGACCGCCATGTATCGCTACAAACAACTCAT
TAGCGCCAAATTAAGTTTGCGTGACTATAACGGACAAGTGGGTGAGGCATTGGCTGGGGTTAAGGCATTAAACAAAGTCATAAGACTGGGTATGCCTGTT
CGCCAGAAAATCTCGTAA
Blast result :
Comments
ISPrre2 is 90% aa similar to ISSpu14.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Boltner,D., MacMahon,C., Pembroke,J.T., Strike,P. and Osborn,A.M. (2002) J. Bacteriol. 184 (18), 5158-5169
3] Pembroke,J.T., MacMahon,C. and McGrath,B. (2002) Cell. Mol. Life Sci. 59 (12), 2055-2064.
2] Boltner,D., MacMahon,C., Pembroke,J.T., Strike,P. and Osborn,A.M. (2002) J. Bacteriol. 184 (18), 5158-5169
3] Pembroke,J.T., MacMahon,C. and McGrath,B. (2002) Cell. Mol. Life Sci. 59 (12), 2055-2064.