ISPa91
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MF168946 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pseudomonas aeruginosa strain FFUP_PS_CB5 |
DNA section
IS Length : 1289 bp
Ends
IR Length : 27/33
IRL : TGAGGTTGCCCCTCAAAAGTGGAGTTCTTAGCTTTGTCCAAAATGTAGAC
IRR : TGATGTTGCCCCTGTTTTGTGGAGTTCTTAGCTCCCTGCTTACGCGGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGCCTTGCA | GAC | CGACAAGGGC | 3 |
DNA sequence
TGAGGTTGCCCCTCAAAAGTGGAGTTCTTAGCTTTGTCCAAAATGTAGACAAGGAGCTAAGCAATGGTGGCAAAGCAAGTACGAGCGGCATACACGCAGG
AATTTAGGTTGGAGGCTGTACGCTTGGTGCAAAGCGGGCAATCTCAGATGCAGGTGTGCCAGACGCTGGGAATCCCCAAGGCCAGCTTGGGCAGTTGGGT
GCGACAGGCAAAAGTAGGCACCCTCAAGCTTGGGACTGCTGATGGTGCTGGCAGCAAGGTAACGCCGGAGCAAATGGAGATAAGCCGTCTGCGAGCCGAA
GTTGCACGTTTGCGAATGGAGCGTGACATCGCAAAAAAAGCGGCGGCGTACTTCGCGCAGGACGTGCTGCGAGGTATGCCTGGATTGAGCAAATGAAGAA
CGTCTATCCAATTGCTGTTTCTTGCCATGTTCTGCAAGTGAGCAGCAGTGGTTACTTCCGCTTCAGACGCAGCGATGGTGAAGCATTACACCTATGCAGT
AATGAATTGGCCCTGGCCCACATACGTGCCATTCATGCAGAGGTTAAAGGCGAATACGGCTGGCCACGCATACACAAAGAGCTGCAAGCTAGAGGTCTGC
GTATTGGCAAAGAGCGGGTGCGTAAGCTCATGGCCGAGCACGGCATACGGGCTAAAACCAAGCGCAAGTTTGTTGTGACCACAGACAGCAAGCACAGCCT
GCCGGTTGCTCCTGACTTGGTGCAGCGGCGTTTTACGCCGCAGGCACCGAACCAACTTCTGTGCGGCGACATCACATACATCCAGACCGACGAAGGCTGG
TTGTACTTGGCTGCAGTGATTGACATGTTCAGCCGTCAGGTGGTGGGATGGAGCCTGCAGCCCCACATGCAAAGCAGCTTGGTTAAAGATGCCATGGCAA
TGGCTTGGTGGCGAAGGCGGCCTGAACCGGGAGCCATATTCCACAGCGACAGGGGCAGCCAATATTGCAGCCAGAGCTTCCAGGCCACATTAGCAGGCTG
GGGCATACGCTCGTCCATGAGCCGCAAAGGCAATTGTTGGGACAACTCGCCCATCGAAAGTTTCTGGGGTCGATTGAAGACCGCTTGCGTCCACGGCCAA
CGCTTCGCTACCCGGGAGCACGCAAGGCAGGCCATCATGAACTGGATGGCCTTCTACAATTACCGCAGATTACATTCGAGCTTGGGCTACCTCAGCCCCA
TGCAATACGAGCAACGCTGGTACGAGGCACAGCGCAAAAAAGCCGCGTAAGCAGGGAGCTAAGAACTCCACAAAACAGGGGCAACATCA
AATTTAGGTTGGAGGCTGTACGCTTGGTGCAAAGCGGGCAATCTCAGATGCAGGTGTGCCAGACGCTGGGAATCCCCAAGGCCAGCTTGGGCAGTTGGGT
GCGACAGGCAAAAGTAGGCACCCTCAAGCTTGGGACTGCTGATGGTGCTGGCAGCAAGGTAACGCCGGAGCAAATGGAGATAAGCCGTCTGCGAGCCGAA
GTTGCACGTTTGCGAATGGAGCGTGACATCGCAAAAAAAGCGGCGGCGTACTTCGCGCAGGACGTGCTGCGAGGTATGCCTGGATTGAGCAAATGAAGAA
CGTCTATCCAATTGCTGTTTCTTGCCATGTTCTGCAAGTGAGCAGCAGTGGTTACTTCCGCTTCAGACGCAGCGATGGTGAAGCATTACACCTATGCAGT
AATGAATTGGCCCTGGCCCACATACGTGCCATTCATGCAGAGGTTAAAGGCGAATACGGCTGGCCACGCATACACAAAGAGCTGCAAGCTAGAGGTCTGC
GTATTGGCAAAGAGCGGGTGCGTAAGCTCATGGCCGAGCACGGCATACGGGCTAAAACCAAGCGCAAGTTTGTTGTGACCACAGACAGCAAGCACAGCCT
GCCGGTTGCTCCTGACTTGGTGCAGCGGCGTTTTACGCCGCAGGCACCGAACCAACTTCTGTGCGGCGACATCACATACATCCAGACCGACGAAGGCTGG
TTGTACTTGGCTGCAGTGATTGACATGTTCAGCCGTCAGGTGGTGGGATGGAGCCTGCAGCCCCACATGCAAAGCAGCTTGGTTAAAGATGCCATGGCAA
TGGCTTGGTGGCGAAGGCGGCCTGAACCGGGAGCCATATTCCACAGCGACAGGGGCAGCCAATATTGCAGCCAGAGCTTCCAGGCCACATTAGCAGGCTG
GGGCATACGCTCGTCCATGAGCCGCAAAGGCAATTGTTGGGACAACTCGCCCATCGAAAGTTTCTGGGGTCGATTGAAGACCGCTTGCGTCCACGGCCAA
CGCTTCGCTACCCGGGAGCACGCAAGGCAGGCCATCATGAACTGGATGGCCTTCTACAATTACCGCAGATTACATTCGAGCTTGGGCTACCTCAGCCCCA
TGCAATACGAGCAACGCTGGTACGAGGCACAGCGCAAAAAAGCCGCGTAAGCAGGGAGCTAAGAACTCCACAAAACAGGGGCAACATCA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
333 bp | 110 aa | 64 | 396 | + | No |
Description : First part of the transposase
ORF sequence :
MVAKQVRAAYTQEFRLEAVRLVQSGQSQMQVCQTLGIPKASLGSWVRQAKVGTLKLGTADGAGSKVTPEQMEISRLRAEVARLRMERDIAKKAAAYFAQD
VLRGMPGLSK
VLRGMPGLSK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 327 | 1250 | + | No |
Description : Second part of the transposase
ORF sequence :
HRKKSGGVLRAGRAARYAWIEQMKNVYPIAVSCHVLQVSSSGYFRFRRSDGEALHLCSNELALAHIRAIHAEVKGEYGWPRIHKELQARGLRIGKERVRK
LMAEHGIRAKTKRKFVVTTDSKHSLPVAPDLVQRRFTPQAPNQLLCGDITYIQTDEGWLYLAAVIDMFSRQVVGWSLQPHMQSSLVKDAMAMAWWRRRPE
PGAIFHSDRGSQYCSQSFQATLAGWGIRSSMSRKGNCWDNSPIESFWGRLKTACVHGQRFATREHARQAIMNWMAFYNYRRLHSSLGYLSPMQYEQRWYE
AQRKKAA
LMAEHGIRAKTKRKFVVTTDSKHSLPVAPDLVQRRFTPQAPNQLLCGDITYIQTDEGWLYLAAVIDMFSRQVVGWSLQPHMQSSLVKDAMAMAWWRRRPE
PGAIFHSDRGSQYCSQSFQATLAGWGIRSSMSRKGNCWDNSPIESFWGRLKTACVHGQRFATREHARQAIMNWMAFYNYRRLHSSLGYLSPMQYEQRWYE
AQRKKAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1187 bp | 395 aa | 64 | 1250 | + | No |
Chemistry : DDE
ORF sequence :
MVAKQVRAAYTQEFRLEAVRLVQSGQSQMQVCQTLGIPKASLGSWVRQAKVGTLKLGTADGAGSKVTPEQMEISRLRAEVARLRMERDIAKKSGGVLRAG
RAARYAWIEQMKNVYPIAVSCHVLQVSSSGYFRFRRSDGEALHLCSNELALAHIRAIHAEVKGEYGWPRIHKELQARGLRIGKERVRKLMAEHGIRAKTK
RKFVVTTDSKHSLPVAPDLVQRRFTPQAPNQLLCGDITYIQTDEGWLYLAAVIDMFSRQVVGWSLQPHMQSSLVKDAMAMAWWRRRPEPGAIFHSDRGSQ
YCSQSFQATLAGWGIRSSMSRKGNCWDNSPIESFWGRLKTACVHGQRFATREHARQAIMNWMAFYNYRRLHSSLGYLSPMQYEQRWYEAQRKKAA
RAARYAWIEQMKNVYPIAVSCHVLQVSSSGYFRFRRSDGEALHLCSNELALAHIRAIHAEVKGEYGWPRIHKELQARGLRIGKERVRKLMAEHGIRAKTK
RKFVVTTDSKHSLPVAPDLVQRRFTPQAPNQLLCGDITYIQTDEGWLYLAAVIDMFSRQVVGWSLQPHMQSSLVKDAMAMAWWRRRPEPGAIFHSDRGSQ
YCSQSFQATLAGWGIRSSMSRKGNCWDNSPIESFWGRLKTACVHGQRFATREHARQAIMNWMAFYNYRRLHSSLGYLSPMQYEQRWYEAQRKKAA
Blast result :
Comments
ISPa91 is 85% aa similar to the transposase of ISCte2.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISPa91 is included in a Tn3 transposon (TnPa38).
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISPa91 is included in a Tn3 transposon (TnPa38).
References
1] Botelho J (2018) Direct submission to ISfinder