ISPfa2
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP011808 | ND | Pandoraea faecigallinarum | Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1 |
DNA section
IS Length : 1427 bp
Ends
IR Length : 14/15
IRL : AATGAAATGAACGCGTCCCACCCCGTGACCGAGTGAGCAAAGGAAGGTGG
IRR : CTATATGAACGCGTCCCGTTTGCAACAGTTTTCGCGTGTTTTGATAGACA
Comments : IRs are not at the termini of the IS.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGGTGATCGGGAG | GTGTCATGGCCACTGATG | 0 |
DNA sequence
AATGAAATGAACGCGTCCCACCCCGTGACCGAGTGAGCAAAGGAAGGTGGATCCTCACGGGCCAACGGCATCGATGTGCCCAAAGTGGAAAATACGAAGT
TTTCCAAAGCAACCGGAGGATCCGAGTGAATTGTACGGCAGTGGGTGTAGACATCGCGAAAAGTGTGTTCCAAGTGCATTACGTCGATCAGGAAACTGGC
GAGATCGTGAACAAGCCGATCAAGCGGGCAAAGTTCCTTGAGCATTTTGCGAACCGAGCGCCGTGCCTGATCGGGATGGAAGCGTGCGGTGGTGCGCACC
ACTGGGCCCGGCAACTCGCGAAGCTGGGCCACGAGGTGAAGCTGATGCCGGGGGAGTTCGTAAAGGCTTTCAACATCAGGAACAAGAGCGATGCGGCTGA
TGCGAAGGCGATCTGGCTGGCCGTGCAGCAGCCGGGCAAGCCGGTCGCAGTAAAGACCGAAATGCAGCAAGCCATGCTGGGGCTGCACCGGATGAGACAG
CAACTGATCAAATTTCGCACGATGCAGATTAATGCTCTGCGAGGGCTGCTAACGGAATACGGTGAAGTGATGGGCAAGAGTCGGGCGAAGCTCGATAAGG
AAATACCCGCTGTGCTCGAACGGATTGCGGAGCGTTTGCCTGCCGTGCTGATCGATACGTTTCGCGCGCAGTGGAACGGACTGGAGAAGCTTGATGAGCA
GATCGCTGAGATCGAGCGTCGGATGCGCGAGTGGAAGAAAGAGGATAAGGCGGTCAAGGCCATCAGCGAGATTCCCGGTGTTGGATTACTGACGGCAACA
GCAGCTGTCGCGATGATGGGAGATGCGAAAGCGTTCAGTTCGGGACGAGAGTTTGCCGCGTGGGTTGGGATCGTGCCGAAGCAGACGGGTTCGGGCGGCA
AGGTGAACTTGCATGGCATATCAAAGCGCGGCGACACATATCTGCGCACCCTGCTGATTCACGGTGCACGATCTGTGCTGACGCATGCGAAAGAGCCCGG
TGAGTGGGTCGAACAAATCCAGAAGCGGCGGCCAAAAAATGTCGTAATCGTCGCGTTAGCCAACAAGATGGCGCGAACGATCTGGGCAGTTCTTGCCCAT
GACCGGCAGTACCAGAAGGGATACGTGAGCGTGAAACCCGTCTAAACGGGCAGCGCTTGCGTAGAGGATTAACGTTTAAACACAGGGTGAACGTCGAAAG
GTTGCGCAGCAATCGAGTGTGATGACAAGCCAGGTAGGACCGGGACTCGCTAAACCTGAATGATGCCTCGAGCTTTGAGCTCGCCGGGAGAATGAGGTGC
GAGTCAGCGAATTTCATAGGGGCCCGCAGCGACTGTACCGACTGCATCGAGGCCGGATATAGAGCTGCAGCCCATCCTGTCTATCAAAACACGCGAAAAC
TGTTGCAAACGGGACGCGTTCATATAG
TTTCCAAAGCAACCGGAGGATCCGAGTGAATTGTACGGCAGTGGGTGTAGACATCGCGAAAAGTGTGTTCCAAGTGCATTACGTCGATCAGGAAACTGGC
GAGATCGTGAACAAGCCGATCAAGCGGGCAAAGTTCCTTGAGCATTTTGCGAACCGAGCGCCGTGCCTGATCGGGATGGAAGCGTGCGGTGGTGCGCACC
ACTGGGCCCGGCAACTCGCGAAGCTGGGCCACGAGGTGAAGCTGATGCCGGGGGAGTTCGTAAAGGCTTTCAACATCAGGAACAAGAGCGATGCGGCTGA
TGCGAAGGCGATCTGGCTGGCCGTGCAGCAGCCGGGCAAGCCGGTCGCAGTAAAGACCGAAATGCAGCAAGCCATGCTGGGGCTGCACCGGATGAGACAG
CAACTGATCAAATTTCGCACGATGCAGATTAATGCTCTGCGAGGGCTGCTAACGGAATACGGTGAAGTGATGGGCAAGAGTCGGGCGAAGCTCGATAAGG
AAATACCCGCTGTGCTCGAACGGATTGCGGAGCGTTTGCCTGCCGTGCTGATCGATACGTTTCGCGCGCAGTGGAACGGACTGGAGAAGCTTGATGAGCA
GATCGCTGAGATCGAGCGTCGGATGCGCGAGTGGAAGAAAGAGGATAAGGCGGTCAAGGCCATCAGCGAGATTCCCGGTGTTGGATTACTGACGGCAACA
GCAGCTGTCGCGATGATGGGAGATGCGAAAGCGTTCAGTTCGGGACGAGAGTTTGCCGCGTGGGTTGGGATCGTGCCGAAGCAGACGGGTTCGGGCGGCA
AGGTGAACTTGCATGGCATATCAAAGCGCGGCGACACATATCTGCGCACCCTGCTGATTCACGGTGCACGATCTGTGCTGACGCATGCGAAAGAGCCCGG
TGAGTGGGTCGAACAAATCCAGAAGCGGCGGCCAAAAAATGTCGTAATCGTCGCGTTAGCCAACAAGATGGCGCGAACGATCTGGGCAGTTCTTGCCCAT
GACCGGCAGTACCAGAAGGGATACGTGAGCGTGAAACCCGTCTAAACGGGCAGCGCTTGCGTAGAGGATTAACGTTTAAACACAGGGTGAACGTCGAAAG
GTTGCGCAGCAATCGAGTGTGATGACAAGCCAGGTAGGACCGGGACTCGCTAAACCTGAATGATGCCTCGAGCTTTGAGCTCGCCGGGAGAATGAGGTGC
GAGTCAGCGAATTTCATAGGGGCCCGCAGCGACTGTACCGACTGCATCGAGGCCGGATATAGAGCTGCAGCCCATCCTGTCTATCAAAACACGCGAAAAC
TGTTGCAAACGGGACGCGTTCATATAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1020 bp | 339 aa | 126 | 1145 | + | No |
Chemistry : DEDD
ORF sequence :
MNCTAVGVDIAKSVFQVHYVDQETGEIVNKPIKRAKFLEHFANRAPCLIGMEACGGAHHWARQLAKLGHEVKLMPGEFVKAFNIRNKSDAADAKAIWLAV
QQPGKPVAVKTEMQQAMLGLHRMRQQLIKFRTMQINALRGLLTEYGEVMGKSRAKLDKEIPAVLERIAERLPAVLIDTFRAQWNGLEKLDEQIAEIERRM
REWKKEDKAVKAISEIPGVGLLTATAAVAMMGDAKAFSSGREFAAWVGIVPKQTGSGGKVNLHGISKRGDTYLRTLLIHGARSVLTHAKEPGEWVEQIQK
RRPKNVVIVALANKMARTIWAVLAHDRQYQKGYVSVKPV
QQPGKPVAVKTEMQQAMLGLHRMRQQLIKFRTMQINALRGLLTEYGEVMGKSRAKLDKEIPAVLERIAERLPAVLIDTFRAQWNGLEKLDEQIAEIERRM
REWKKEDKAVKAISEIPGVGLLTATAAVAMMGDAKAFSSGREFAAWVGIVPKQTGSGGKVNLHGISKRGDTYLRTLLIHGARSVLTHAKEPGEWVEQIQK
RRPKNVVIVALANKMARTIWAVLAHDRQYQKGYVSVKPV
Blast result :
Comments
ISPfa2 is 76% aa similar to ISPfa1.
There is an empty site in Pandoraea vervacti strain NS15 plasmid pPV15 (CP010898).
There is an empty site in Pandoraea vervacti strain NS15 plasmid pPV15 (CP010898).
References
1] ISfinder annotation (2018)
2] Yong,D., Ee,R., Lim,Y.-L., Yin,W.-F. and Chan,K.-G. (2016) Direct GenBank submission.
2] Yong,D., Ee,R., Lim,Y.-L., Yin,W.-F. and Chan,K.-G. (2016) Direct GenBank submission.