ISPfa2

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011808 ND Pandoraea faecigallinarum
Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1
DNA section
IS Length : 1427 bp

Ends


IR Length : 14/15

IRL : AATGAAATGAACGCGTCCCACCCCGTGACCGAGTGAGCAAAGGAAGGTGG
IRR : CTATATGAACGCGTCCCGTTTGCAACAGTTTTCGCGTGTTTTGATAGACA

Comments : IRs are not at the termini of the IS.

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGGTGATCGGGAGGTGTCATGGCCACTGATG0

DNA sequence

AATGAAATGAACGCGTCCCACCCCGTGACCGAGTGAGCAAAGGAAGGTGGATCCTCACGGGCCAACGGCATCGATGTGCCCAAAGTGGAAAATACGAAGT
TTTCCAAAGCAACCGGAGGATCCGAGTGAATTGTACGGCAGTGGGTGTAGACATCGCGAAAAGTGTGTTCCAAGTGCATTACGTCGATCAGGAAACTGGC
GAGATCGTGAACAAGCCGATCAAGCGGGCAAAGTTCCTTGAGCATTTTGCGAACCGAGCGCCGTGCCTGATCGGGATGGAAGCGTGCGGTGGTGCGCACC
ACTGGGCCCGGCAACTCGCGAAGCTGGGCCACGAGGTGAAGCTGATGCCGGGGGAGTTCGTAAAGGCTTTCAACATCAGGAACAAGAGCGATGCGGCTGA
TGCGAAGGCGATCTGGCTGGCCGTGCAGCAGCCGGGCAAGCCGGTCGCAGTAAAGACCGAAATGCAGCAAGCCATGCTGGGGCTGCACCGGATGAGACAG
CAACTGATCAAATTTCGCACGATGCAGATTAATGCTCTGCGAGGGCTGCTAACGGAATACGGTGAAGTGATGGGCAAGAGTCGGGCGAAGCTCGATAAGG
AAATACCCGCTGTGCTCGAACGGATTGCGGAGCGTTTGCCTGCCGTGCTGATCGATACGTTTCGCGCGCAGTGGAACGGACTGGAGAAGCTTGATGAGCA
GATCGCTGAGATCGAGCGTCGGATGCGCGAGTGGAAGAAAGAGGATAAGGCGGTCAAGGCCATCAGCGAGATTCCCGGTGTTGGATTACTGACGGCAACA
GCAGCTGTCGCGATGATGGGAGATGCGAAAGCGTTCAGTTCGGGACGAGAGTTTGCCGCGTGGGTTGGGATCGTGCCGAAGCAGACGGGTTCGGGCGGCA
AGGTGAACTTGCATGGCATATCAAAGCGCGGCGACACATATCTGCGCACCCTGCTGATTCACGGTGCACGATCTGTGCTGACGCATGCGAAAGAGCCCGG
TGAGTGGGTCGAACAAATCCAGAAGCGGCGGCCAAAAAATGTCGTAATCGTCGCGTTAGCCAACAAGATGGCGCGAACGATCTGGGCAGTTCTTGCCCAT
GACCGGCAGTACCAGAAGGGATACGTGAGCGTGAAACCCGTCTAAACGGGCAGCGCTTGCGTAGAGGATTAACGTTTAAACACAGGGTGAACGTCGAAAG
GTTGCGCAGCAATCGAGTGTGATGACAAGCCAGGTAGGACCGGGACTCGCTAAACCTGAATGATGCCTCGAGCTTTGAGCTCGCCGGGAGAATGAGGTGC
GAGTCAGCGAATTTCATAGGGGCCCGCAGCGACTGTACCGACTGCATCGAGGCCGGATATAGAGCTGCAGCCCATCCTGTCTATCAAAACACGCGAAAAC
TGTTGCAAACGGGACGCGTTCATATAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp339 aa1261145+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNCTAVGVDIAKSVFQVHYVDQETGEIVNKPIKRAKFLEHFANRAPCLIGMEACGGAHHWARQLAKLGHEVKLMPGEFVKAFNIRNKSDAADAKAIWLAV
QQPGKPVAVKTEMQQAMLGLHRMRQQLIKFRTMQINALRGLLTEYGEVMGKSRAKLDKEIPAVLERIAERLPAVLIDTFRAQWNGLEKLDEQIAEIERRM
REWKKEDKAVKAISEIPGVGLLTATAAVAMMGDAKAFSSGREFAAWVGIVPKQTGSGGKVNLHGISKRGDTYLRTLLIHGARSVLTHAKEPGEWVEQIQK
RRPKNVVIVALANKMARTIWAVLAHDRQYQKGYVSVKPV

 

Blast result :
Comments
ISPfa2 is 76% aa similar to ISPfa1.
There is an empty site in Pandoraea vervacti strain NS15 plasmid pPV15 (CP010898).
References
1] ISfinder annotation (2018)
2] Yong,D., Ee,R., Lim,Y.-L., Yin,W.-F. and Chan,K.-G. (2016) Direct GenBank submission.